Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00492 and BL01793
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_00492___ycdA.1.5803.seq
# -bsequence dna-align/BL01793___ycdA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00492___ycdA-BL01793___ycdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00492___ycdA-BL01793___ycdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00492___ycdA
# 2: BL01793___ycdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1242
# Identity: 697/1242 (56.1%)
# Similarity: 697/1242 (56.1%)
# Gaps: 324/1242 (26.1%)
# Score: 1670.5
#
#
#=======================================
BSNT_00492___ 1 TTGAGGAGGAAAAATGAATGTTTCAGAA--AAAAAACGTACGCTGTTTTC 48
||| .||| ||||| |||||
BL01793___ycd 1 -----------------ATG----CGAAGTAAAAA---------GTTTT- 19
BSNT_00492___ 49 CTAATTCTTCTGCTGA------TGATGTTTACAGCTG-CTTGT------- 84
|||||.||| |||||.||..|||.| |.|||
BL01793___ycd 20 -------TTCTGATGATGCTTTTGATGATTGTAGCAGTCGTGTCAACAGC 62
BSNT_00492___ 85 -TCC---GGCAGCAAAA-CAAGCGCGGAGAAGAAAGAATCAGAAACAGAA 129
|.| |||||||||| |..|.|||||| ||||||| |||.|| |||
BL01793___ycd 63 CTGCGGAGGCAGCAAAAGCGCGAGCGGAG-AGAAAGA---AGATAC-GAA 107
BSNT_00492___ 130 AAAAGCTCAGATATAGCTCAAGTCAAAATC--AAGGATGTCTC---TTAT 174
||||| ||||||..||..||||.|||||| ||| ||| .|||
BL01793___ycd 108 AAAAG--CAGATAATGCAGAAGTTAAAATCCTAAG-----CTCCGAATAT 150
BSNT_00492___ 175 ACGCTTCCGTCTAAATATGATAAGTC-----CA---CTTCA-GATGACCA 215
|||||||| ||||.|.|| || ||.|| ||..|..|
BL01793___ycd 151 ACGCTTCC---------TGATGATTCATCAACAAACCTGCACGAAAATGA 191
BSNT_00492___ 216 GCTTGTGTTAAAAGTCAATGTCGCGGTGAAAAACACAGGAAAAGACCCGC 265
.|||.|..||||..|||||||..|.||||||||.|||||.|||||.|| .
BL01793___ycd 192 ACTTATACTAAAGATCAATGTTTCCGTGAAAAATACAGGGAAAGAACC-A 240
BSNT_00492___ 266 TGAAT-GTAGACAGTATGGATTTCA-CATTGTATCAAGGTGATACCAAAA 313
|.||| ||.||.|..|...|.|||| |.|| ||..||||.||..|.||||
BL01793___ycd 241 TTAATGGTTGATAAAAGCCAATTCAGCCTT-TACGAAGGCGACTCAAAAA 289
BSNT_00492___ 314 TGTCTGAC-ACAG-----ACCCTG-AAGACTATAGCGAAAAGCTTCAAGT 356
||||.||| .||| |...|| |||| |.|.|||.|||||
BL01793___ycd 290 TGTCGGACGTCAGCGTATATGATGAAAGA----AACAAAAGGCTTC---- 331
BSNT_00492___ 357 CAGC------ACGATTAACGCTGACAAATCCGTTGAAGGAAATCT---TT 397
|| |||.|.||..||||||||...||.||.||||||.| ||
BL01793___ycd 332 --GCTCTTCGACGCTGAATTCTGACAAAGAAGTCGACGGAAATATCTATT 379
BSNT_00492___ 398 TCTTCGTTGTAGATAAAGGCAAGCAATACGAGCTTAACTATACGCC-GAA 446
.|.||||| ||.||||||||..|.|...|||||.|.||.||.|| ||.
BL01793___ycd 380 ACATCGTT---GAAAAAGGCAAAAAGTTTCAGCTTGAATACACACCTGAC 426
BSNT_00492___ 447 ATCTTACGGTGATAA-AAAACCAAAATCAGTTACTTTTAAAATTGA---- 491
|| .||||||||.|| |||.|| |.|.||.|.|||.|.||
BL01793___ycd 427 AT-GTACGGTGAAAATAAAGCC-------GATCCTGTCAAATTCGAGATC 468
BSNT_00492___ 492 -----CGGAAAAGACAAAAAAATCCTGACGACGGCAGATAAGCTCCAAGA 536
|||.|..||| .||.|.||||..|||||..|.||.||..||||
BL01793___ycd 469 GACGGCGGCAGCGAC---GAATTACTGAAAACGGCCAAAAAACTTGAAGA 515
BSNT_00492___ 537 TTCTGCAAAAGCGTTATCAGCTTATGTTGATGTCCTTCTTTTCGGCAAAG 586
|.|.||||||||.||...||||||....||.||.....||||||||||||
BL01793___ycd 516 TCCGGCAAAAGCTTTGCTAGCTTACACAGACGTAACGATTTTCGGCAAAG 565
BSNT_00492___ 587 ------ATAACGCCGATTTCGAAAAAATCACCGGCGCTAACAAAAATGAA 630
||||| ||.||.|||.|...||.||..||||||..||||
BL01793___ycd 566 ACAATAATAAC------TTTGATAAACTGGTCGACGAAAACAAACGTGAA 609
BSNT_00492___ 631 ATTGTAAATGATTTCAATGAA-----TCAGCCAAAGACGGTTATCTCTCA 675
.|.||.|..||||.|..|||| ||| ||| ||||.||
BL01793___ycd 610 GTCGTTACCGATTACCTTGAAGGCGCTCA---AAA-------ATCTATC- 648
BSNT_00492___ 676 GCTTCCGGC-CTTTCCAGCACA-TATGCGGACAGCAAAGCGCTTGATA-- 721
.||| || |||| ||.|.| ||||..|| || |||...|.||||
BL01793___ycd 649 -GTTC--GCTCTTT--AGGATATTATGATGA-AG--AAGATGTGGATAAA 690
BSNT_00492___ 722 ---ATATCGTGAAT------------GGCATTAAAGAGG--GATTAAGCA 754
|.|| ||||| |.|||..||.|.| .||.|||.|
BL01793___ycd 691 AAGAAAT--TGAATAAACTGATCAGCGCCATCCAAAACGCCTATCAAGAA 738
BSNT_00492___ 755 AAAACTCTTCCATTC-AAGCA-----AAAACGACTTCAATCTCTAAAGAC 798
|||.| ||.|.|| ||||| |||| |||||.||....||.
BL01793___ycd 739 AAATC---TCAAGTCAAAGCAGTTACAAAA-----TCAATTTCAGGCGAT 780
BSNT_00492___ 799 GAAGCAATTGTTGAAGCCACAGTTAAACC---------TGTAGATGCATC 839
|||||||.||||||.||.||.||||..|| |..|||||
BL01793___ycd 781 GAAGCAACTGTTGAGGCAACCGTTACGCCAATCGATAATACAGATG---- 826
BSNT_00492___ 840 TTCTCTTTC------------------AGACCGCATCGAAGACAAAGTGA 871
|| |||| |.||||||.|.||||
BL01793___ycd 827 -------TCCAAAAGAAAGTGAAGAAAAGAC----TGGAAGACTATGTGA 865
BSNT_00492___ 872 AAGACTACTA-CAGTAAAAACTCTAGTG-CCAGCTATGAGGAGGCAGTGA 919
||||| | |.|.|||.||| |..|| ||||..|||| |.|||
BL01793___ycd 866 AAGAC----AGCGGCAAAGACT-TCATGTCCAGAGATGA------ATTGA 904
BSNT_00492___ 920 --AATAC-GCGCTTCAAGTCTATCCTGAG----GAATTCAAAAA------ 956
|||.| |||.||.| .|||.|||| |||.|||||||
BL01793___ycd 905 TCAATCCTGCGATTGA----CATCATGAGTGAAGAAATCAAAAAAGCAGA 950
BSNT_00492___ 957 -GCTTGGACCTGCTTCATCTGAAAAAACAGTTGAAGTGAAA-ATGAA--- 1001
|| || |||||..|||.|||||.||||||||.||| .||||
BL01793___ycd 951 GGC---GA----CTTCAAGTGAGAAAACCGTTGAAGTCAAACTTGAAAAA 993
BSNT_00492___ 1002 --GAAAAATGACATCGACCAATGGCAGCTTGATATGGATGATTACAGAG- 1048
.|||||||||| |||||.|..|||||...|||.|||||| ||
BL01793___ycd 994 TCAAAAAATGACA------AATGGAAAATTGATGCTGATAATTACA-AGA 1036
BSNT_00492___ 1049 CAGCAGAAT--TAGTCGAAGCATTCATCAAAG-AATAA---- 1083
|.|.|.||| |..|| ||||.|.|.|.|||| ||.||
BL01793___ycd 1037 CCGAACAATACTTCTC-AAGCTTCCTTAAAAGCAACAACTAA 1077
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