Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00492 and BL01793

See Amino acid alignment / Visit BSNT_00492 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence dna-align/BSNT_00492___ycdA.1.5803.seq
#    -bsequence dna-align/BL01793___ycdA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00492___ycdA-BL01793___ycdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00492___ycdA-BL01793___ycdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00492___ycdA
# 2: BL01793___ycdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1242
# Identity:     697/1242 (56.1%)
# Similarity:   697/1242 (56.1%)
# Gaps:         324/1242 (26.1%)
# Score: 1670.5
# 
#
#=======================================

BSNT_00492___      1 TTGAGGAGGAAAAATGAATGTTTCAGAA--AAAAAACGTACGCTGTTTTC     48
                                      |||    .|||  |||||         ||||| 
BL01793___ycd      1 -----------------ATG----CGAAGTAAAAA---------GTTTT-     19

BSNT_00492___     49 CTAATTCTTCTGCTGA------TGATGTTTACAGCTG-CTTGT-------     84
                            |||||.|||      |||||.||..|||.| |.|||       
BL01793___ycd     20 -------TTCTGATGATGCTTTTGATGATTGTAGCAGTCGTGTCAACAGC     62

BSNT_00492___     85 -TCC---GGCAGCAAAA-CAAGCGCGGAGAAGAAAGAATCAGAAACAGAA    129
                      |.|   |||||||||| |..|.|||||| |||||||   |||.|| |||
BL01793___ycd     63 CTGCGGAGGCAGCAAAAGCGCGAGCGGAG-AGAAAGA---AGATAC-GAA    107

BSNT_00492___    130 AAAAGCTCAGATATAGCTCAAGTCAAAATC--AAGGATGTCTC---TTAT    174
                     |||||  ||||||..||..||||.||||||  |||     |||   .|||
BL01793___ycd    108 AAAAG--CAGATAATGCAGAAGTTAAAATCCTAAG-----CTCCGAATAT    150

BSNT_00492___    175 ACGCTTCCGTCTAAATATGATAAGTC-----CA---CTTCA-GATGACCA    215
                     ||||||||         ||||.|.||     ||   ||.|| ||..|..|
BL01793___ycd    151 ACGCTTCC---------TGATGATTCATCAACAAACCTGCACGAAAATGA    191

BSNT_00492___    216 GCTTGTGTTAAAAGTCAATGTCGCGGTGAAAAACACAGGAAAAGACCCGC    265
                     .|||.|..||||..|||||||..|.||||||||.|||||.|||||.|| .
BL01793___ycd    192 ACTTATACTAAAGATCAATGTTTCCGTGAAAAATACAGGGAAAGAACC-A    240

BSNT_00492___    266 TGAAT-GTAGACAGTATGGATTTCA-CATTGTATCAAGGTGATACCAAAA    313
                     |.||| ||.||.|..|...|.|||| |.|| ||..||||.||..|.||||
BL01793___ycd    241 TTAATGGTTGATAAAAGCCAATTCAGCCTT-TACGAAGGCGACTCAAAAA    289

BSNT_00492___    314 TGTCTGAC-ACAG-----ACCCTG-AAGACTATAGCGAAAAGCTTCAAGT    356
                     ||||.||| .|||     |...|| ||||    |.|.|||.|||||    
BL01793___ycd    290 TGTCGGACGTCAGCGTATATGATGAAAGA----AACAAAAGGCTTC----    331

BSNT_00492___    357 CAGC------ACGATTAACGCTGACAAATCCGTTGAAGGAAATCT---TT    397
                       ||      |||.|.||..||||||||...||.||.||||||.|   ||
BL01793___ycd    332 --GCTCTTCGACGCTGAATTCTGACAAAGAAGTCGACGGAAATATCTATT    379

BSNT_00492___    398 TCTTCGTTGTAGATAAAGGCAAGCAATACGAGCTTAACTATACGCC-GAA    446
                     .|.|||||   ||.||||||||..|.|...|||||.|.||.||.|| ||.
BL01793___ycd    380 ACATCGTT---GAAAAAGGCAAAAAGTTTCAGCTTGAATACACACCTGAC    426

BSNT_00492___    447 ATCTTACGGTGATAA-AAAACCAAAATCAGTTACTTTTAAAATTGA----    491
                     || .||||||||.|| |||.||       |.|.||.|.|||.|.||    
BL01793___ycd    427 AT-GTACGGTGAAAATAAAGCC-------GATCCTGTCAAATTCGAGATC    468

BSNT_00492___    492 -----CGGAAAAGACAAAAAAATCCTGACGACGGCAGATAAGCTCCAAGA    536
                          |||.|..|||   .||.|.||||..|||||..|.||.||..||||
BL01793___ycd    469 GACGGCGGCAGCGAC---GAATTACTGAAAACGGCCAAAAAACTTGAAGA    515

BSNT_00492___    537 TTCTGCAAAAGCGTTATCAGCTTATGTTGATGTCCTTCTTTTCGGCAAAG    586
                     |.|.||||||||.||...||||||....||.||.....||||||||||||
BL01793___ycd    516 TCCGGCAAAAGCTTTGCTAGCTTACACAGACGTAACGATTTTCGGCAAAG    565

BSNT_00492___    587 ------ATAACGCCGATTTCGAAAAAATCACCGGCGCTAACAAAAATGAA    630
                           |||||      ||.||.|||.|...||.||..||||||..||||
BL01793___ycd    566 ACAATAATAAC------TTTGATAAACTGGTCGACGAAAACAAACGTGAA    609

BSNT_00492___    631 ATTGTAAATGATTTCAATGAA-----TCAGCCAAAGACGGTTATCTCTCA    675
                     .|.||.|..||||.|..||||     |||   |||       ||||.|| 
BL01793___ycd    610 GTCGTTACCGATTACCTTGAAGGCGCTCA---AAA-------ATCTATC-    648

BSNT_00492___    676 GCTTCCGGC-CTTTCCAGCACA-TATGCGGACAGCAAAGCGCTTGATA--    721
                      .|||  || ||||  ||.|.| ||||..|| ||  |||...|.||||  
BL01793___ycd    649 -GTTC--GCTCTTT--AGGATATTATGATGA-AG--AAGATGTGGATAAA    690

BSNT_00492___    722 ---ATATCGTGAAT------------GGCATTAAAGAGG--GATTAAGCA    754
                        |.||  |||||            |.|||..||.|.|  .||.|||.|
BL01793___ycd    691 AAGAAAT--TGAATAAACTGATCAGCGCCATCCAAAACGCCTATCAAGAA    738

BSNT_00492___    755 AAAACTCTTCCATTC-AAGCA-----AAAACGACTTCAATCTCTAAAGAC    798
                     |||.|   ||.|.|| |||||     ||||     |||||.||....||.
BL01793___ycd    739 AAATC---TCAAGTCAAAGCAGTTACAAAA-----TCAATTTCAGGCGAT    780

BSNT_00492___    799 GAAGCAATTGTTGAAGCCACAGTTAAACC---------TGTAGATGCATC    839
                     |||||||.||||||.||.||.||||..||         |..|||||    
BL01793___ycd    781 GAAGCAACTGTTGAGGCAACCGTTACGCCAATCGATAATACAGATG----    826

BSNT_00492___    840 TTCTCTTTC------------------AGACCGCATCGAAGACAAAGTGA    871
                            ||                  ||||    |.||||||.|.||||
BL01793___ycd    827 -------TCCAAAAGAAAGTGAAGAAAAGAC----TGGAAGACTATGTGA    865

BSNT_00492___    872 AAGACTACTA-CAGTAAAAACTCTAGTG-CCAGCTATGAGGAGGCAGTGA    919
                     |||||    | |.|.|||.||| |..|| ||||..||||      |.|||
BL01793___ycd    866 AAGAC----AGCGGCAAAGACT-TCATGTCCAGAGATGA------ATTGA    904

BSNT_00492___    920 --AATAC-GCGCTTCAAGTCTATCCTGAG----GAATTCAAAAA------    956
                       |||.| |||.||.|    .|||.||||    |||.|||||||      
BL01793___ycd    905 TCAATCCTGCGATTGA----CATCATGAGTGAAGAAATCAAAAAAGCAGA    950

BSNT_00492___    957 -GCTTGGACCTGCTTCATCTGAAAAAACAGTTGAAGTGAAA-ATGAA---   1001
                      ||   ||    |||||..|||.|||||.||||||||.||| .||||   
BL01793___ycd    951 GGC---GA----CTTCAAGTGAGAAAACCGTTGAAGTCAAACTTGAAAAA    993

BSNT_00492___   1002 --GAAAAATGACATCGACCAATGGCAGCTTGATATGGATGATTACAGAG-   1048
                       .||||||||||      |||||.|..|||||...|||.|||||| || 
BL01793___ycd    994 TCAAAAAATGACA------AATGGAAAATTGATGCTGATAATTACA-AGA   1036

BSNT_00492___   1049 CAGCAGAAT--TAGTCGAAGCATTCATCAAAG-AATAA----   1083
                     |.|.|.|||  |..|| ||||.|.|.|.|||| ||.||    
BL01793___ycd   1037 CCGAACAATACTTCTC-AAGCTTCCTTAAAAGCAACAACTAA   1077


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