Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04883 and BL01792
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04883___yusT.1.5803.seq
# -bsequence dna-align/BL01792___ytlI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04883___yusT-BL01792___ytlI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04883___yusT-BL01792___ytlI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04883___yusT
# 2: BL01792___ytlI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1129
# Identity: 506/1129 (44.8%)
# Similarity: 506/1129 (44.8%)
# Gaps: 485/1129 (43.0%)
# Score: 806.0
#
#
#=======================================
BSNT_04883___ 1 ATGGAAAGCGGAGATTT----ACGTGT------GTTTC---AAATGGTAG 37
||| ||||| |||| | ||||| ||||.||.|
BL01792___ytl 1 ATG---------GATTTCAAAACGT-TAAAGACGTTTCATAAAATCGTGG 40
BSNT_04883___ 38 CTCGTGAAGGAACCATTA--CGAAAGCAGCCCTGCAG--CTTGGCTATGT 83
||.| .||||.|.||| || .||.| |||.|| ||....||||.
BL01792___ytl 41 CTTG---CGGAAGCTTTAACCG--CGCGG--CTGAAGAACTGAATTATGC 83
BSNT_04883___ 84 ACAATCGAATGTCACGGCCAGAATTCAGCAATT--GGAAGCT-------G 124
.||.|| |||||.||.||| ||||.| ..||||| |
BL01792___ytl 84 GCAGTC------CACGGTCACAAT---GCAAATCAAAAAGCTCGAGGAAG 124
BSNT_04883___ 125 AGCTGGGTACCACACTGTT--TTTGCGCCATAATCGGGGCATGACACTTT 172
|.||.||.| || ||||| |||.|
BL01792___ytl 125 ACCTCGGCA--------TTCGTTTGC-------TCGAG------------ 147
BSNT_04883___ 173 CTGCAAGCGGAAA--ATTGCTGCTGGACT-ACGCAAATAAAATTATCGGC 219
|.|.||||| |||.|..|| |||| |.|| ||||
BL01792___ytl 148 ----AGGGGGAAAACATTCCGTCT-GACTGAAGC------------CGGC 180
BSNT_04883___ 220 ---CTGCTTGATGAAGCGTCTAAAGCGCTCTCATCCTCCGCAGAAC---- 262
||..||..||||| ||| |||| ||
BL01792___ytl 181 AGGCTTTTTTTTGAAG-----AAA---------------GCAG-ACATAT 209
BSNT_04883___ 263 ---CAAGCGGGTCGCTTAT-GATCGGCTCCA--CTCAGACTACCGCCGCG 306
||| |..||| ||||..||.|| .||| ||..||||..
BL01792___ytl 210 TGTCAA-------GGATATAGATCACCTTCAACATCA---TATGGCCGAC 249
BSNT_04883___ 307 GTAAGGCTT--CCAAAG----------CTCCTGGCA----TCTTATTATG 340
.||..|||| |.||.| |.|||.|.| ||
BL01792___ytl 250 TTATTGCTTGGCGAAGGGGGAAATATCCGCCTTGGAGCGGTC-------- 291
BSNT_04883___ 341 AAGAAC--ATC-CAAAC-GT--------CCAGCT---------ATCTTTA 369
|||| ||| |.|.| || ||||.| ||.||||
BL01792___ytl 292 --GAACCGATCGCGAGCTGTGAATTGCCCCAGATTTTGGGGAGATTTTTA 339
BSNT_04883___ 370 ACAACAGGA-CATACGCAA--------TTTCTCCTTGATA-----AAGTT 405
.| ||| .||.|| || |||| |.|||||| || .|
BL01792___ytl 340 GC----GGATTATCCG-AAGATCCGGGTTTC-CGTTGATATCGCCAA-CT 382
BSNT_04883___ 406 CTTCGTTATGAATTGG----ATGGCGCGTTTATCGGATGC---GA--ATG 446
|.||| |.||||| |.|||..|||.| .|||.|| || .||
BL01792___ytl 383 CGTCG----GCATTGGGGGAACGGCTGGTTCA-AGGAAGCCTGGATCTTG 427
BSNT_04883___ 447 CCATCATCCTGAGCTCGAATCC-------------------TAT------ 471
||.|| .|.||||.||| |||
BL01792___ytl 428 CCGTC------TGTTCGACTCCGGCAATGGGAACAGATCTTTATTTTGAA 471
BSNT_04883___ 472 CCTGCGTT-TGAGGAAGAACCAGTAGTTGTTTCGGCTGCCTCCGTG---- 516
|| ||.|| ||..|||||||..||||| |||| ||||.||
BL01792___ytl 472 CC-GCTTTATGCTGAAGAACTCGTAGT-------GCTG-CTCCCTGAGGG 512
BSNT_04883___ 517 ----CCCG---------ATGTTGAGGAA-GC---CATCACAAAGCCGATT 549
|||| || ||| || ||||..||| |||
BL01792___ytl 513 ACACCCCGCCGGAAACAAT------GAACGCATTCATCTGAAA---GAT- 552
BSNT_04883___ 550 CTCGTTTA--CAGCACAGGCTGTTCGTATCGAGAAACACTT--------- 588
.||| .|||||.|.|||.|..|..||...||||.||
BL01792___ytl 553 ----ATTAGGGAGCACCGCCTGCTGATTACGGCCAACAATTGCACCTACC 598
BSNT_04883___ 589 -GAAAAATGGC-----TGCGTT-------CCGTCGGTGTCACACAGCC-- 623
|||.||.|.| .||||| |.|.|||.| ||||
BL01792___ytl 599 GGAAGAAAGTCGAAATCGCGTTTCAAGAGCTGCCGGGG------AGCCAA 642
BSNT_04883___ 624 --GGTCATTATGGA-ATTTGGGACGCTTGA-AGC-------AATTATCGG 662
|..||..||||| | |.|||.||.||| ||| ||.|||
BL01792___ytl 643 ATGAACACGATGGAGA--TCGGAAGCATGACAGCTTTGAAAAACTAT--- 687
BSNT_04883___ 663 CGGGGTTACAGCAGGTCTTGGCATCTCGTTGCTGCCAAGAACGGTTG-TG 711
|||.|.|||||.||.|| |||||| || || |.
BL01792___ytl 688 ----GTTGCCGCAGGACTCGG-----CGTTGC--CC---------TGATT 717
BSNT_04883___ 712 CAGAAACATGAAGCAGAAGGATCAATTCGATTGTACCCGCTGCCTGAAGC 761
|.||| ||||| |||.|| ||.|| |||
BL01792___ytl 718 CCGAA-----AAGCA-----------TCGTTT----CCCCT-CCT----- 741
BSNT_04883___ 762 GCTCAGCCAGATGAAAACAGAGTTTATTGTTCGAAAAGATTCGTTTATC- 810
.||| ||.| ||| .|||||.|| |||||||
BL01792___ytl 742 CCTC--CCGG-----AAC------GATTGTCCG---------GTTTATCG 769
BSNT_04883___ 811 -----------AGCAGCGCGCTGAGAACCTTTATGGATTCCTTTAC---- 845
|.||||| .|||||| .||..||||||.|
BL01792___ytl 770 ACGATGACCCGATCAGCG------TAACCTT--CGGCATCCTTTGCAAAA 811
BSNT_04883___ 846 -----GC----CAGATAAAAC-GGCTGAATCACAAAAAAGCAGT-CTGCT 884
|| |.|.|.|||| ||||||..| |||||.|| |...|
BL01792___ytl 812 CCGCGGCGTTTCCGCTGAAACAGGCTGATGC-----AAAGCTGTACCAAT 856
BSNT_04883___ 885 AT---AA---------------------- 888
|| ||
BL01792___ytl 857 ATTTGAAACAGGAACTTGGAGAACCGTAA 885
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