Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03073 and BL01787
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_03073___yoaA.1.5803.seq
# -bsequence dna-align/BL01787___ynaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03073___yoaA-BL01787___ynaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03073___yoaA-BL01787___ynaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03073___yoaA
# 2: BL01787___ynaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 648
# Identity: 326/648 (50.3%)
# Similarity: 326/648 (50.3%)
# Gaps: 225/648 (34.7%)
# Score: 640.5
#
#
#=======================================
BSNT_03073___ 1 ATG-------TTTCCTATATTAGAAACGGATCGGCTTACACTTAGGCAAA 43
||| || |||| .||||| |||.| ||||.|..|||
BL01787___yna 1 ATGGAAACCCTT---TATA-CAGAAA--GATTG------ACTTTGAGAAA 38
BSNT_03073___ 44 TCACTGAT-------CAGGATGCGGAAGCCATTT----TTGCTTGTTTCT 82
||| .|||||||.||.|.|.|.| .|.||.| |
BL01787___yna 39 -----GATGGAATTGGAGGATGCAGATGTCCTCTGTCAATACTGG----T 79
BSNT_03073___ 83 CAAACGATGAGGTGACACGCTATTATGGGCTTGAAA-ACATGGA-ATC-- 128
||.||...||.||.||| ||| |.|||.| |||
BL01787___yna 80 CAGACCCGGAAGTCACA----------------AAATATATGAATATCGC 113
BSNT_03073___ 129 ------TATAGA------ACA------GGCCAT----------TTCAATG 150
||.||| ||| ||.||| .||||||
BL01787___yna 114 GCCTTTTACAGACGTCTCACAAGCGCGGGACATGATCCAAATGATCAATG 163
BSNT_03073___ 151 ATTCAAACGTTTGCTGCCCTCTATCAAGAA--------AAACGCGGTATA 192
|||.||.|.|| ||| |||| ||.|.|.
BL01787___yna 164 ATTTAAGCCTT----------------GAAGGGCAGGCAAAC-CGCTTTT 196
BSNT_03073___ 193 CGGTGGGGAATTG-AAAG---ACGGGACACTAAAGAACTGATCGGAACAA 238
||.| .|||| |||| ||||| .|||.|.|||||.|||.
BL01787___yna 197 CGAT----TATTGCAAAGGAAACGGG-------TGAAGTCATCGGGACAT 235
BSNT_03073___ 239 TAGGCTTTCACGCTCTG---GCCCA--AAAGCATAGGC-GCGCGGAGATC 282
..||||||.| |.|| |.||| |||.| ||| |.||.||.|||
BL01787___yna 236 GCGGCTTTAA---TATGATCGACCAGGAAAAC---GGCAGAGCTGAAATC 279
BSNT_03073___ 283 GGTTAT----------GAAATCATCCCGGAGCATTGGCGAAACGGATTTG 322
||.||| ||||| ||||||.||||.||.||||
BL01787___yna 280 GGCTATGACTTAGGAAGAAAT----------CATTGGGGAAAAGGCTTTG 319
BSNT_03073___ 323 CATCAGAAGTCATTTCAAAGGTCGTATC--TTACGGATTTTC-TGCCCTT 369
|.||.|||| .|.|||||...|..||| .|||||.|||.| .| |||
BL01787___yna 320 CTTCCGAAG--CTGTCAAAAAACTGATCGACTACGGCTTTACAAG--CTT 365
BSNT_03073___ 370 GGACTGTC--GCGTATTG--GCGCAGTTGTATTTACCGCTAATGAAGC-- 413
|.|| .|| .||.||.| |||.|| |||....||| .||..|.||
BL01787___yna 366 GAAC-CTCAACCGAATCGAAGCGAAG--GTAGAGCCCG-AAAACACGCCT 411
BSNT_03073___ 414 ---ATCAAATCGTCTGCTTCTAAAAATGGGT----TTTCAAAAAGAAGGC 456
|||||| ||||| .||.|.|.| ||||||||.|||||.
BL01787___yna 412 TCAATCAAA-------CTTCT-CAACTCGTTATCCTTTCAAAAGGAAGGA 453
BSNT_03073___ 457 GTTTTAAGACAGTAC-ATGTATCAAAATGG------GATTCCATATGA-- 497
.|.||||||.|.||| |...|.||||| || ||| |||
BL01787___yna 454 CTGTTAAGAGAATACGAGAAAGCAAAA-GGAAGACTGAT------TGACG 496
BSNT_03073___ 498 TACAAATGTGTACTCTATTG-TGAAACCAAGAGAATGA---------- 534
||.|.||||.|.| |.|| |||| |||||||| |
BL01787___yna 497 TATACATGTTTTC---ACTGCTGAA---AAGAGAAT-ACGCTGGGTAA 537
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