Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01629 and BL01764
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01629___yhdG.1.5803.seq
# -bsequence dna-align/BL01764___yhdG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01629___yhdG-BL01764___yhdG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01629___yhdG-BL01764___yhdG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01629___yhdG
# 2: BL01764___yhdG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1726
# Identity: 812/1726 (47.0%)
# Similarity: 812/1726 (47.0%)
# Gaps: 662/1726 (38.4%)
# Score: 1386.0
#
#
#=======================================
BSNT_01629___ 1 ATGAAAGGGAGCGTTTTTAGGAAGAAGAGCATTCAGGATTTAATCGCTGC 50
|.||| || ||.|||| ||
BL01764___yhd 1 ----ATGGG--------TA-----AACAGCA----------AA------- 16
BSNT_01629___ 51 GACGAGCGGTGAAAAGTCTTTAAAAAGAGAATT-----AGGGGCATTTGA 95
||||| ||||.|| | ||..|.||.||.
BL01764___yhd 17 ---------TGAAA-------AAAACGA----TGTCGCAGACGGATGTGC 46
BSNT_01629___ 96 TTTAACATTGCTTGGAATCGGCGCCATTAT----TGGCACAGGGATTTTT 141
| |||..|.|..|||||.||.||..| |||..|.||| |.
BL01764___yhd 47 T-----ATTTTTAGCGATCGGAGCTATGCTCGGCTGGGGCTGGG----TC 87
BSNT_01629___ 142 GTTCT-------GACGGGA-----ACAGGTGCAGTCACGGCCGG--TCCC 177
||.|| |||.||| ||| ||||| |...
BL01764___yhd 88 GTCCTTTCCGGCGACTGGATTTCGACA------------GCCGGCTTTTT 125
BSNT_01629___ 178 GGGCTG-ACGATTTCATTTGTTGT-GGCGGC--GCTGG----CTT----- 214
||||.| |||||..|.|||.|..| |||||| .||.| |||
BL01764___yhd 126 GGGCAGCACGATCGCGTTTATCATCGGCGGCATACTCGTCATCTTAATCG 175
BSNT_01629___ 215 -GTTTA--TTCGCCGCCCTGTCTT--------------AC-----GCGG- 241
|||.| |.|||.|..||||||| || ||||
BL01764___yhd 176 GGTTAACGTACGCGGAGCTGTCTTCTGCCATCCCTGAAACGGGTGGCGGC 225
BSNT_01629___ 242 --AATTTGCGTCAAGTGTGCCTGTTTCAGGTTCGGTGTATACA----TTC 285
.||||.||||.|..|.|| ||||||...|.|.| ||
BL01764___yhd 226 TTGATTTTCGTCTACAGGGC---------GTTCGGACGAAAAACGGCTT- 265
BSNT_01629___ 286 ACTTAT-GCGACATTGGGAGAGCTTATGGCCTTTATTATCGGGTGGGATT 334
||.| ||..|.|.|||.|.|||..|.|.||.|.|| ||| |.||||
BL01764___yhd 266 --TTGTCGCCGCTTGGGGTGTGCTGTTCGGCTATGTT-TCG---GTGATT 309
BSNT_01629___ 335 TAATTTTAGAATACATGCTGGCGGTAAGTGCAGTG----------TCGGT 374
..||||.| |||||| .|||.|| |||.|
BL01764___yhd 310 ACATTTGA-----------GGCGGT---CGCATTGCCTACCGTCATCGAT 345
BSNT_01629___ 375 --CGGCTGGTCTGGTTATTTCCAATCGTTTTTATCAGGGCTCGGCATTCA 422
||.|..|.||| ||.|| .|||||||.| |||
BL01764___yhd 346 TACGTCCTGCCTG------TCGAA-------CATCAGGGGT-----TTC- 376
BSNT_01629___ 423 TCTTCCGGTTGCTTTAACAGCGGC----ACCGGGCGCAGTGAAAGGCACC 468
||.|||.||| .|||||| || |||.|.|.|||.
BL01764___yhd 377 ---TCTGGTCGCT----AAGCGGCTGGGAC--------GTGTATGTCACT 411
BSNT_01629___ 469 TTTACCCTGT-TTAATC--TTC-----CTGCATTCGTCATTGTAATGGCG 510
| ..|| ||.||| ||| .|||..||||| .|.|..|||
BL01764___yhd 412 T-----GGGTGTTGATCGGTTCGGGAGGTGCGGTCGTC---CTGACAGCG 453
BSNT_01629___ 511 ATCACATATTTGCTTTATTTAGGCATCAA--------AGA---ATCAAAA 549
.||| .|||.||.|||.|||| .|| .||
BL01764___yhd 454 CTCA---------ATTACTTCGGCGTCAAGCCGGCCGCGATTTTTC---- 490
BSNT_01629___ 550 AGAGTCAACAATATCATGGTTATCTTGAAGAT-------------ACTGG 586
|||| || ||||.|.||| ||.||
BL01764___yhd 491 --AGTC-----------GG---TCTTTACGATTGCGATTATCGCCACGGG 524
BSNT_01629___ 587 TTGTTCTGCTGTTTATCGCGGTGGCAGCC---GTTTAC-GTGAAGCCGCA 632
.| ||||.||.|| .||.||| ||| ||..|| ||||...||.|
BL01764___yhd 525 CT-TTCTCCTTTT-----GGGCGGC-GCCTTGGTAAACGGTGATTTCGAA 567
BSNT_01629___ 633 CAACTG-GCAG-CCGTTTATGCCAATG--GGCTTTGGCGGCGTGTTCAGT 678
|| || .||| ||.|||.| ||.| ||.|||..|||..||.| ||
BL01764___yhd 568 CA--TGTACAGCCCCTTTTT---AAAGACGGGTTTTCCGGTATGAT--GT 610
BSNT_01629___ 679 GCAGCGGCGCTCGT----ATTC--TTTGCT-TTTATCGGATTTGACGCTG 721
|.|..||.|| |||| ||| || |||.||||||||||| |
BL01764___yhd 611 ----CCGTCCTTGTCATGATTCCGTTT-CTATTTGTCGGATTTGAC---G 652
BSNT_01629___ 722 T-ATCCTCT---GCTGCGGAAGAAA---------CGAAAAATCCCGCGAA 758
| |||| || |.|||||..|||| ||||||| ||
BL01764___yhd 653 TCATCC-CTCAGGTTGCGGCTGAAATTAATGCCCCGAAAAA-------AA 694
BSNT_01629___ 759 GGATCTGCCTAAA-----GGCATTATT----TTCTC-------------T 786
..|||.|| ||| | |||||| ||.|| |
BL01764___yhd 695 TCATCGGC--AAAATTTTG--ATTATTTCGATTATCAGTGCGGTCGTGTT 740
BSNT_01629___ 787 TTATTGGTCTGCACGATTTTATATGTCACCGTATC--------------- 821
||||| ||| .||||.||| ||..||||.|
BL01764___yhd 741 TTATT----TGC-TGATTGTAT---TCGGCGTAACGATGGGTCTGTCAGA 782
BSNT_01629___ 822 -AGCGATCATG--------ACTGGGGTTATCCCGTTTGC-----TCAATT 857
|||||.|.|| .||..||..|.|.||..||| |||||.
BL01764___yhd 783 AAGCGAGCTTGCGACGACTTCTTTGGCAACCGCGGATGCAATGGTCAATC 832
BSNT_01629___ 858 TG--CGGG-------TGT--GGATCATCCGGTTTCTCTAGTTCTTCAAAG 896
|| |||| ||| || || |||| .||.||.||
BL01764___yhd 833 TGCTCGGGAACCAGCTGTTCGG--CA--CGGT---GCTTGTCCT------ 869
BSNT_01629___ 897 CGCAGGGCAAAACTGG-GTGGCTGGCATCATTGATATTGGCGCCGTGCTG 945
.||| || ||.||.||.|||||| .||.|||
BL01764___yhd 870 ----CGGC------GGCGTCGCCGGAATCATT----------ACGAGCT- 898
BSNT_01629___ 946 GGAATGACAACAGTTATGCTTGTGATGCTTTACGGGCAGACACGCG---- 991
||||.| ||.||||..| ||| ||||
BL01764___yhd 899 GGAACG----CATTTATCAT------------CGG-------CGCGAGCC 925
BSNT_01629___ 992 ----TCATGTTTGCCATGTC-----------TCGTGACGGACTTGTGCCG 1026
|| |||||||.||||| |.|||.||.|.|.||.|
BL01764___yhd 926 GGATTC-TGTTTGCAATGTCGGAAAAGGGCATGGTGCCGAAATGGTTC-- 972
BSNT_01629___ 1027 GGC-TCACTTTCTAAAGTGCATCCAAAGCACAAAACAC---CTTATGTGG 1072
||| ||| |.|||||.|||.|.|||||.| ||.|| |
BL01764___yhd 973 GGCTTCA----------TCCATCCGAAGTATAAAACGCCGACTAAT---G 1009
BSNT_01629___ 1073 CCACTTGGTTTTTCGGAACGATGTCG---------GCGCTTCTCGG---- 1109
|.|.||..|||.|.||..||.||.|| .||||.|||||
BL01764___yhd 1010 CAATTTTATTTCTGGGTGCGCTGGCGTTTTTTGCCCCGCTGCTCGGACGC 1059
BSNT_01629___ 1110 -CT-CACTTGTTCCGCTGGATGAACTTGCAAAGC-TGGTGAACATCGGGA 1156
|| |.|||||| ||||| |.| |||.|| .||.||||| ||.|
BL01764___yhd 1060 CCTGCCCTTGTT----TGGAT---CGT-CAATGCAGGGGGAACA--GGTA 1099
BSNT_01629___ 1157 -CACTGTCGG-CATTT----GTCCTGATTTCTGTGGCAGTTAT----CGT 1196
.|..||||| .|||| |||..|||| |||.|.|| |
BL01764___yhd 1100 TTATAGTCGGATATTTGATCGTCTCGATT------GCATTCATGAAGC-- 1141
BSNT_01629___ 1197 TTTGAGAAAGA-AGCAGCCCGATCTTCCGAGAGCCTT----------TAA 1235
|||||||.| || ||||.|||.|.|..|| |||.| |||
BL01764___yhd 1142 --TGAGAAAAACAG-AGCCGGATTTACACAG-GCCGTATAAAATCAATAA 1187
BSNT_01629___ 1236 ATG------CCCGGGAGTTCCGGTTATCC----CAGGCCTGGCGATTCTG 1275
.|| ..||||..|..|.|.||||| .|| || ||.|.
BL01764___yhd 1188 GTGGAAAACAACGGGTATATCTGCTATCCTCTTAAG---TG----TTATC 1230
BSNT_01629___ 1276 TTC--TGCCTGTTCTTGATTTTAAATCTGGGATG--GGTGACGAT----T 1317
||| ||||| ||.|||| ..|.||.||| ||...||.| |
BL01764___yhd 1231 TTCCTTGCCT----TTTATTT---GCCAGGCATGCCGGCCGCGCTCACAT 1273
BSNT_01629___ 1318 GTCCGCTTCCTA-GTGTGGCTGTTAAT--CGGCTTGGTAATTTA-----T 1359
|.||| || |.|||||||.|..| |||..|||..|||.| |
BL01764___yhd 1274 GGCCG-----TATGAGTGGCTGATCTTGGCGGGATGGACATTGATCGGTT 1318
BSNT_01629___ 1360 TTCCTGTATTCAAGAAAGCA-TTCAAAA-TTAAA-----------TCAAT 1396
|||.|.|||.|| |.|||| ||||||| .|||| ||||.
BL01764___yhd 1319 TTCTTTTATACA--ACAGCAGTTCAAAACGTAAAGGGGAGGAGATTCAAC 1366
BSNT_01629___ 1397 AA------------------------ 1398
|.
BL01764___yhd 1367 ATGACCAGCATGCTAGAAGTATATAA 1392
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