Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06185 and BL01737
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_06185___rocD.1.5803.seq
# -bsequence dna-align/BL01737___rocD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06185___rocD-BL01737___rocD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06185___rocD-BL01737___rocD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06185___rocD
# 2: BL01737___rocD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1265
# Identity: 935/1265 (73.9%)
# Similarity: 935/1265 (73.9%)
# Gaps: 88/1265 ( 7.0%)
# Score: 3541.5
#
#
#=======================================
BSNT_06185___ 1 ATGTTGAAACAGAAAACAAGGGGGAATTCAAATATGACAGCTTTATCTAA 50
|||||.|.|.||||.||
BL01737___roc 1 ---------------------------------ATGACGGTTCTATCAAA 17
BSNT_06185___ 51 ATCCAAAGAAATTATTGATCAGACGTCTCATTACGGAGCCAACAATTATC 100
.|||.|..|||||||..|.||.||..|.||||..||.||.||.||.||||
BL01737___roc 18 GTCCGAGAAAATTATGAAGCAAACCGCACATTTTGGCGCGAATAACTATC 67
BSNT_06185___ 101 ATCCGCTCCCGATTGTTATTTCTGAAGCGCTGGGTTCTTGGGTAAAGGAC 150
||||.||.|||||.||.||||||||||||...||..|.|||||.||.||.
BL01737___roc 68 ATCCTCTGCCGATCGTGATTTCTGAAGCGGAAGGCGCGTGGGTGAAAGAT 117
BSNT_06185___ 151 CCGGAAGGCAATGAATATATGGATATGCTGAGTGCTTATTCTGCGGTAAA 200
|||||||||||...|||.||||||||||||||.||||||||.||.||.||
BL01737___roc 118 CCGGAAGGCAACCGATACATGGATATGCTGAGCGCTTATTCCGCAGTGAA 167
BSNT_06185___ 201 CCAGGGGCACAGACACCCGAAAATCATTCAGGCATTAAAGGATCAGGCTG 250
.||.||||||||.||||||||||||||.|||||.|||||.||||||||.|
BL01737___roc 168 TCAAGGGCACAGGCACCCGAAAATCATCCAGGCGTTAAAAGATCAGGCAG 217
BSNT_06185___ 251 ATAAAATCACCCTCACGTCACGCGCGTTTCATAACGATCAGCTTGGGCCG 300
|.|||||||||||.||.||..|.||.|||||.||.||.||||||||.||.
BL01737___roc 218 ACAAAATCACCCTGACTTCGAGAGCTTTTCACAATGACCAGCTTGGTCCT 267
BSNT_06185___ 301 TTTTACGAAAAAACAGCTAAACTGACAGGCAAAGAGATGATTCTGCCGAT 350
|||||.|||||....|||..|.|.||.||.||.||.|||.||||||||||
BL01737___roc 268 TTTTATGAAAAGGTCGCTTCATTAACGGGGAAGGACATGGTTCTGCCGAT 317
BSNT_06185___ 351 GAATACAGGAGCCGAAGCGGTTGAATCCGCGGTGAAAGCGGCGAGACGCT 400
|||.||.||.||.|||||||||||.|||||.||.|||||.|||.|.||||
BL01737___roc 318 GAACACCGGTGCGGAAGCGGTTGAGTCCGCAGTTAAAGCAGCGCGGCGCT 367
BSNT_06185___ 401 GGGCGTATGAAGTGAAGGGCGTAGCTGACAATCAAGCGGAAATTATCGCA 450
||||.|||||.||.||.|||||..|.||||||||.|||||||||||||||
BL01737___roc 368 GGGCTTATGATGTAAAAGGCGTTCCGGACAATCAGGCGGAAATTATCGCA 417
BSNT_06185___ 451 TGTGTCGGGAACTTCCACGGCCGCACGATGCTGGCGGTATCTCTTTCTTC 500
||||..||.||.||.||||||||.|||||||||||.||.||.||.|||||
BL01737___roc 418 TGTGAAGGCAATTTTCACGGCCGGACGATGCTGGCTGTGTCGCTATCTTC 467
BSNT_06185___ 501 TGAAGAGGAATATAAACGAGGATTCGGCCCGATGCTTCCGGGAATCAAAC 550
.|||||.||.||||||||.||.|||||.|||||||||||.||.|||||.|
BL01737___roc 468 AGAAGAAGAGTATAAACGCGGTTTCGGACCGATGCTTCCCGGCATCAAGC 517
BSNT_06185___ 551 TCATTCCTTACGGCGATGTGGAAGCGCTTCGACAGGCCATTACGCCGAAT 600
|.|||||.|||||.|||.||||||||||...||||||.||.||.||||||
BL01737___roc 518 TGATTCCATACGGGGATCTGGAAGCGCTGAAACAGGCGATCACACCGAAT 567
BSNT_06185___ 601 ACAGCGGCATTCTTGTTTGAACCGATTCAAGGCGAAGCGGGTATTGTAAT 650
|||||.||.||.||..||||.|||||||||||.||||||||.|||||.||
BL01737___roc 568 ACAGCCGCTTTTTTAATTGAGCCGATTCAAGGTGAAGCGGGAATTGTCAT 617
BSNT_06185___ 651 TCCGCCGGAAGGATTTTTACAGGAAGC-GGCGGC-GA--TTTGTAAGGAA 696
||||||||||||.||||| ||||| |||.|| || |.||.| ||
BL01737___roc 618 TCCGCCGGAAGGCTTTTT----GAAGCAGGCTGCTGAAGTCTGCA---AA 660
BSNT_06185___ 697 GAG---AATGTCTTGTTTATTGCGGATGAAATTCAAACGGGTCTCGGACG 743
||| ||||||||||||||.||.||||||||.||..|.||.||.|.|||
BL01737___roc 661 GAGCGCAATGTCTTGTTTATCGCCGATGAAATACAGTCAGGGCTTGCACG 710
BSNT_06185___ 744 TACAGGCAAGACGTTTGCCTGTGACTGGGACGGCATTGTTCCGGATATGT 793
||||||.||.|.|||.||||.|||.|||||.|.|.|....||||||||||
BL01737___roc 711 TACAGGGAAAATGTTCGCCTCTGATTGGGAGGACGTCACACCGGATATGT 760
BSNT_06185___ 794 ATATCTTGGGCAAAGCGCTTGGCGGCGGTGTGTTCCCGATCTCATGCATT 843
|.||.||.||.||||||||.||.|||||.|||||||||||.||.||||||
BL01737___roc 761 ACATTTTAGGTAAAGCGCTCGGAGGCGGCGTGTTCCCGATATCGTGCATT 810
BSNT_06185___ 844 GCGGCGGACCGCGA-GATCTTAGGCGTGTTTAACCCTGGCTCACACGGCT 892
||.||..||||.|| |..||| |||||||||||.||.|||||||||||.|
BL01737___roc 811 GCAGCAAACCGGGATGTGCTT-GGCGTGTTTAATCCGGGCTCACACGGAT 859
BSNT_06185___ 893 CCACATTTGGCGGAAACCCGCTTGCATGTGCAGTGTCTATTGC--CTCAT 940
|.||.|||||.||.||||||||||||||.||.||.||.||.|| |||
BL01737___roc 860 CGACCTTTGGAGGGAACCCGCTTGCATGCGCCGTATCGATCGCAGCTC-- 907
BSNT_06185___ 941 TGGAAGTGCTGGAGGATGAAAAGCTGGCGGATCGTTCTCTTGAGCTTGGA 990
|.|||||||||||.||.||...|||.||.||.||.||.||.||||||||.
BL01737___roc 908 TTGAAGTGCTGGAAGACGAGCGGCTCGCTGAACGGTCGCTGGAGCTTGGG 957
BSNT_06185___ 991 GAATACTTTAAAAGCGAGCTTGAGAGC--------ATTGACAACCCGGTT 1032
|||||||||||| || |.||| |||||.||.||....
BL01737___roc 958 GAATACTTTAAA---GA-----AAAGCTCTCGCAAATTGATAATCCTAAA 999
BSNT_06185___ 1033 ATTAAAGAAGTCCGCGGCAGAGGGCTGTTTATCGGTGTGGAATTGACTGA 1082
||.||||||||.||||||||.||||||||.|||||.||.||..||||.||
BL01737___roc 1000 ATCAAAGAAGTGCGCGGCAGGGGGCTGTTCATCGGGGTAGAGCTGACCGA 1049
BSNT_06185___ 1083 AGCGGCACGTCCGTATTGTGAGCGTTTGAAGGAAGAAGGGCTTTTATGCA 1132
.|||||.|||||||||||.|||||..||||.|||||||||||..|.||||
BL01737___roc 1050 GGCGGCGCGTCCGTATTGCGAGCGCCTGAAAGAAGAAGGGCTGCTCTGCA 1099
BSNT_06185___ 1133 AGGAAACGCATGATACAGTCATTCGTTTTGCACCGCCATTAATCATTTCC 1182
|.|||||||||||.||.||.|||||.||||||||.||..|..|||||||.
BL01737___roc 1100 AAGAAACGCATGAGACGGTAATTCGCTTTGCACCTCCTCTTGTCATTTCT 1149
BSNT_06185___ 1183 AAAGAGGATTTGGATTGGGCGATAGAGAAAATTAAGCACGTGCT------ 1226
.|.||||||.|||||||||||||.||.||.|||| |.||||.|
BL01737___roc 1150 CATGAGGATCTGGATTGGGCGATTGAAAAGATTA--CCCGTGTTTTGTCG 1197
BSNT_06185___ 1227 --GCAAAACGCATAA 1239
|.||
BL01737___roc 1198 AAGTAA--------- 1203
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