Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06185 and BL01737

See Amino acid alignment / Visit BSNT_06185 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:09
# Commandline: needle
#    -asequence dna-align/BSNT_06185___rocD.1.5803.seq
#    -bsequence dna-align/BL01737___rocD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06185___rocD-BL01737___rocD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06185___rocD-BL01737___rocD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06185___rocD
# 2: BL01737___rocD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1265
# Identity:     935/1265 (73.9%)
# Similarity:   935/1265 (73.9%)
# Gaps:          88/1265 ( 7.0%)
# Score: 3541.5
# 
#
#=======================================

BSNT_06185___      1 ATGTTGAAACAGAAAACAAGGGGGAATTCAAATATGACAGCTTTATCTAA     50
                                                      |||||.|.|.||||.||
BL01737___roc      1 ---------------------------------ATGACGGTTCTATCAAA     17

BSNT_06185___     51 ATCCAAAGAAATTATTGATCAGACGTCTCATTACGGAGCCAACAATTATC    100
                     .|||.|..|||||||..|.||.||..|.||||..||.||.||.||.||||
BL01737___roc     18 GTCCGAGAAAATTATGAAGCAAACCGCACATTTTGGCGCGAATAACTATC     67

BSNT_06185___    101 ATCCGCTCCCGATTGTTATTTCTGAAGCGCTGGGTTCTTGGGTAAAGGAC    150
                     ||||.||.|||||.||.||||||||||||...||..|.|||||.||.||.
BL01737___roc     68 ATCCTCTGCCGATCGTGATTTCTGAAGCGGAAGGCGCGTGGGTGAAAGAT    117

BSNT_06185___    151 CCGGAAGGCAATGAATATATGGATATGCTGAGTGCTTATTCTGCGGTAAA    200
                     |||||||||||...|||.||||||||||||||.||||||||.||.||.||
BL01737___roc    118 CCGGAAGGCAACCGATACATGGATATGCTGAGCGCTTATTCCGCAGTGAA    167

BSNT_06185___    201 CCAGGGGCACAGACACCCGAAAATCATTCAGGCATTAAAGGATCAGGCTG    250
                     .||.||||||||.||||||||||||||.|||||.|||||.||||||||.|
BL01737___roc    168 TCAAGGGCACAGGCACCCGAAAATCATCCAGGCGTTAAAAGATCAGGCAG    217

BSNT_06185___    251 ATAAAATCACCCTCACGTCACGCGCGTTTCATAACGATCAGCTTGGGCCG    300
                     |.|||||||||||.||.||..|.||.|||||.||.||.||||||||.||.
BL01737___roc    218 ACAAAATCACCCTGACTTCGAGAGCTTTTCACAATGACCAGCTTGGTCCT    267

BSNT_06185___    301 TTTTACGAAAAAACAGCTAAACTGACAGGCAAAGAGATGATTCTGCCGAT    350
                     |||||.|||||....|||..|.|.||.||.||.||.|||.||||||||||
BL01737___roc    268 TTTTATGAAAAGGTCGCTTCATTAACGGGGAAGGACATGGTTCTGCCGAT    317

BSNT_06185___    351 GAATACAGGAGCCGAAGCGGTTGAATCCGCGGTGAAAGCGGCGAGACGCT    400
                     |||.||.||.||.|||||||||||.|||||.||.|||||.|||.|.||||
BL01737___roc    318 GAACACCGGTGCGGAAGCGGTTGAGTCCGCAGTTAAAGCAGCGCGGCGCT    367

BSNT_06185___    401 GGGCGTATGAAGTGAAGGGCGTAGCTGACAATCAAGCGGAAATTATCGCA    450
                     ||||.|||||.||.||.|||||..|.||||||||.|||||||||||||||
BL01737___roc    368 GGGCTTATGATGTAAAAGGCGTTCCGGACAATCAGGCGGAAATTATCGCA    417

BSNT_06185___    451 TGTGTCGGGAACTTCCACGGCCGCACGATGCTGGCGGTATCTCTTTCTTC    500
                     ||||..||.||.||.||||||||.|||||||||||.||.||.||.|||||
BL01737___roc    418 TGTGAAGGCAATTTTCACGGCCGGACGATGCTGGCTGTGTCGCTATCTTC    467

BSNT_06185___    501 TGAAGAGGAATATAAACGAGGATTCGGCCCGATGCTTCCGGGAATCAAAC    550
                     .|||||.||.||||||||.||.|||||.|||||||||||.||.|||||.|
BL01737___roc    468 AGAAGAAGAGTATAAACGCGGTTTCGGACCGATGCTTCCCGGCATCAAGC    517

BSNT_06185___    551 TCATTCCTTACGGCGATGTGGAAGCGCTTCGACAGGCCATTACGCCGAAT    600
                     |.|||||.|||||.|||.||||||||||...||||||.||.||.||||||
BL01737___roc    518 TGATTCCATACGGGGATCTGGAAGCGCTGAAACAGGCGATCACACCGAAT    567

BSNT_06185___    601 ACAGCGGCATTCTTGTTTGAACCGATTCAAGGCGAAGCGGGTATTGTAAT    650
                     |||||.||.||.||..||||.|||||||||||.||||||||.|||||.||
BL01737___roc    568 ACAGCCGCTTTTTTAATTGAGCCGATTCAAGGTGAAGCGGGAATTGTCAT    617

BSNT_06185___    651 TCCGCCGGAAGGATTTTTACAGGAAGC-GGCGGC-GA--TTTGTAAGGAA    696
                     ||||||||||||.|||||    ||||| |||.|| ||  |.||.|   ||
BL01737___roc    618 TCCGCCGGAAGGCTTTTT----GAAGCAGGCTGCTGAAGTCTGCA---AA    660

BSNT_06185___    697 GAG---AATGTCTTGTTTATTGCGGATGAAATTCAAACGGGTCTCGGACG    743
                     |||   ||||||||||||||.||.||||||||.||..|.||.||.|.|||
BL01737___roc    661 GAGCGCAATGTCTTGTTTATCGCCGATGAAATACAGTCAGGGCTTGCACG    710

BSNT_06185___    744 TACAGGCAAGACGTTTGCCTGTGACTGGGACGGCATTGTTCCGGATATGT    793
                     ||||||.||.|.|||.||||.|||.|||||.|.|.|....||||||||||
BL01737___roc    711 TACAGGGAAAATGTTCGCCTCTGATTGGGAGGACGTCACACCGGATATGT    760

BSNT_06185___    794 ATATCTTGGGCAAAGCGCTTGGCGGCGGTGTGTTCCCGATCTCATGCATT    843
                     |.||.||.||.||||||||.||.|||||.|||||||||||.||.||||||
BL01737___roc    761 ACATTTTAGGTAAAGCGCTCGGAGGCGGCGTGTTCCCGATATCGTGCATT    810

BSNT_06185___    844 GCGGCGGACCGCGA-GATCTTAGGCGTGTTTAACCCTGGCTCACACGGCT    892
                     ||.||..||||.|| |..||| |||||||||||.||.|||||||||||.|
BL01737___roc    811 GCAGCAAACCGGGATGTGCTT-GGCGTGTTTAATCCGGGCTCACACGGAT    859

BSNT_06185___    893 CCACATTTGGCGGAAACCCGCTTGCATGTGCAGTGTCTATTGC--CTCAT    940
                     |.||.|||||.||.||||||||||||||.||.||.||.||.||  |||  
BL01737___roc    860 CGACCTTTGGAGGGAACCCGCTTGCATGCGCCGTATCGATCGCAGCTC--    907

BSNT_06185___    941 TGGAAGTGCTGGAGGATGAAAAGCTGGCGGATCGTTCTCTTGAGCTTGGA    990
                     |.|||||||||||.||.||...|||.||.||.||.||.||.||||||||.
BL01737___roc    908 TTGAAGTGCTGGAAGACGAGCGGCTCGCTGAACGGTCGCTGGAGCTTGGG    957

BSNT_06185___    991 GAATACTTTAAAAGCGAGCTTGAGAGC--------ATTGACAACCCGGTT   1032
                     ||||||||||||   ||     |.|||        |||||.||.||....
BL01737___roc    958 GAATACTTTAAA---GA-----AAAGCTCTCGCAAATTGATAATCCTAAA    999

BSNT_06185___   1033 ATTAAAGAAGTCCGCGGCAGAGGGCTGTTTATCGGTGTGGAATTGACTGA   1082
                     ||.||||||||.||||||||.||||||||.|||||.||.||..||||.||
BL01737___roc   1000 ATCAAAGAAGTGCGCGGCAGGGGGCTGTTCATCGGGGTAGAGCTGACCGA   1049

BSNT_06185___   1083 AGCGGCACGTCCGTATTGTGAGCGTTTGAAGGAAGAAGGGCTTTTATGCA   1132
                     .|||||.|||||||||||.|||||..||||.|||||||||||..|.||||
BL01737___roc   1050 GGCGGCGCGTCCGTATTGCGAGCGCCTGAAAGAAGAAGGGCTGCTCTGCA   1099

BSNT_06185___   1133 AGGAAACGCATGATACAGTCATTCGTTTTGCACCGCCATTAATCATTTCC   1182
                     |.|||||||||||.||.||.|||||.||||||||.||..|..|||||||.
BL01737___roc   1100 AAGAAACGCATGAGACGGTAATTCGCTTTGCACCTCCTCTTGTCATTTCT   1149

BSNT_06185___   1183 AAAGAGGATTTGGATTGGGCGATAGAGAAAATTAAGCACGTGCT------   1226
                     .|.||||||.|||||||||||||.||.||.||||  |.||||.|      
BL01737___roc   1150 CATGAGGATCTGGATTGGGCGATTGAAAAGATTA--CCCGTGTTTTGTCG   1197

BSNT_06185___   1227 --GCAAAACGCATAA   1239
                       |.||         
BL01737___roc   1198 AAGTAA---------   1203


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