Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00627 and BL01729
See
Amino acid alignment /
Visit
BSNT_00627 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_00627___srfAD.1.5803.seq
# -bsequence dna-align/BL01729___lchAD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00627___srfAD-BL01729___lchAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00627___srfAD-BL01729___lchAD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00627___srfAD
# 2: BL01729___lchAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 801
# Identity: 502/801 (62.7%)
# Similarity: 502/801 (62.7%)
# Gaps: 132/801 (16.5%)
# Score: 1456.0
#
#
#=======================================
BSNT_00627___ 1 ATGAGCCAACTC-TTCAAATCA-TTTGATGCGTCGGAAA---AAACGCAG 45
||||.|.|..|| || ||.|| ||||..|||.|||.|| ..|.||||
BL01729___lch 1 ATGAACGAGATCATT--AAGCAGTTTGGAGCGCCGGCAAGCGGTATGCAG 48
BSNT_00627___ 46 CTCATCTGTTTTCCGTTTGCTGGCGGCTACTCGGCGTCGTTTCGCCCTCT 95
.|.||||||||.||||||||.||.||.||.|||||.||.||..|.||.||
BL01729___lch 49 TTGATCTGTTTCCCGTTTGCCGGGGGATATTCGGCATCATTCAGACCGCT 98
BSNT_00627___ 96 CCATGCTTTTTT----GCAGGGGGAGTGCGAGATGCTCGCTGCCGAGCCG 141
.||.|....||| .|| ||.|..||.|||||.||...|||.|||
BL01729___lch 99 TCACGAACATTTAAAAACA----GATTTTGATATGCTGGCGATCGAACCG 144
BSNT_00627___ 142 CCGGGACACGGCACGAATCAAACGTCAGCCATT---GAGGATCTCGAAGA 188
||.|||||||||||.||||.||.| ||..|| ||..||.|.|||.|
BL01729___lch 145 CCTGGACACGGCACAAATCGAATG---GCGCTTGTCGACAATTTGGAAAA 191
BSNT_00627___ 189 GCTGACAGATTTGTACA-AGCAAGAACTGAACCTTCGCCCTGATCGGCCG 237
|||..|.||||||||.| ||| .|..||.|| ||| .||||
BL01729___lch 192 GCTCGCCGATTTGTATATAGC-GGCGCTTAA-----GCC----GCGGC-- 229
BSNT_00627___ 238 TTT-----------GTGCTGTTCGGACACAGTATGGGCGGAATGATCACC 276
||| |||||||||||.||||||||||||||.|||.|....
BL01729___lch 230 TTTCCTCTCAATTCGTGCTGTTCGGCCACAGTATGGGCGGCATGGTTGTT 279
BSNT_00627___ 277 TTCAGGCTGGCGCAAAAGCTTGAGCGTGAGGGCATCTTTCC-GCAGGCG- 324
|.|||||||||||||||||||||.|..||.||.|||||||| ||||.||
BL01729___lch 280 TACAGGCTGGCGCAAAAGCTTGAACAAGAAGGGATCTTTCCGGCAGCCGC 329
BSNT_00627___ 325 ---GTTATCATTTCTGCAATCCAGCCGCCTCATATTCAGCGGAAGAAAGT 371
|.||||| ||.||.||||||||.||||||||||||.|.||.||
BL01729___lch 330 TGTGATATCA-----GCGATACAGCCGCCCCATATTCAGCGGCAAAAGGT 374
BSNT_00627___ 372 GTCCCACCTGCCTGATGA-TCAGTTTCTCGATCATATTATCCAATTAGGC 420
|||.||||.....||||| .|| ||||||||.|||.|.||.||..|.|||
BL01729___lch 375 GTCTCACCAAAAGGATGACGCA-TTTCTCGACCATCTCATTCAGCTTGGC 423
BSNT_00627___ 421 GGAATGCCCGCAGAGCTTGTTGAAAATAAGGAGGTCATGTCCTTTTTCCT 470
|||||.|||..|||.||.|..||..|.|.|||..|.|||..|||||||||
BL01729___lch 424 GGAATACCCAAAGAACTGGCAGAGCACAGGGAAATGATGAACTTTTTCCT 473
BSNT_00627___ 471 GCCTTCTTTCCGATCAGATTACCGGGCTCTTGAACAATTTGAGCTTTACG 520
||||||.|||.||.|.||.|||.|.||.||||| .|||
BL01729___lch 474 GCCTTCGTTCAGAGCGGACTACAGAGCGCTTGA-------------GACG 510
BSNT_00627___ 521 ATCTGGCCCA----GATC----------CAG-TCGCCTGTTCATGTCTTT 555
.|||| ||| |||| .|| ||||||||.|||.|..|.
BL01729___lch 511 TTCTG--CCATACCGATCATACGCCGCTTAGATCGCCTGTGCATATTCTG 558
BSNT_00627___ 556 AACGG-----GCTTGATGATAAAAAATGCATACGAGATGCGGAAGGCTGG 600
||||| || |||.|.||||||||..|.||||||...||||||
BL01729___lch 559 AACGGAGACCGC-----GATGAGAAATGCATGAGGGATGCGCTTGGCTGG 603
BSNT_00627___ 601 AAGAAGTGGGCAAAAGAC-ATCACATTCCATCAATTT-GACGGAGGACAC 648
||.|||||||| .||.|| |||...||||| |.|||| .|.||.|||||.
BL01729___lch 604 AAAAAGTGGGC-GAATACGATCGATTTCCA-CTATTTCAAAGGCGGACAT 651
BSNT_00627___ 649 ATGTTCCTGCTGTCACAAACGGAAGAAGTCGC----------AGAACGGA 688
||||..||..|.|||.||||||||.||||.|| |.||| ||
BL01729___lch 652 ATGTATCTTTTATCAGAAACGGAACAAGTAGCCGCCAAGTTGAAAAC-GA 700
BSNT_00627___ 689 TTTTTGCGATCTTGAATCAGCA----------TCCGATCATTCAACCGTG 728
||...|||..| |.|.||| |||||..||..||
BL01729___lch 701 TTGCCGCGGCC----AGCCGCAGTACGGCTGTTCCGACAATGTAA----- 741
BSNT_00627___ 729 A 729
BL01729___lch 741 - 741
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.