Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00362 and BL01719
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:01
# Commandline: needle
# -asequence dna-align/BSNT_00362___ybdM.1.5803.seq
# -bsequence dna-align/BL01719.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00362___ybdM-BL01719.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00362___ybdM-BL01719.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00362___ybdM
# 2: BL01719
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity: 448/977 (45.9%)
# Similarity: 448/977 (45.9%)
# Gaps: 379/977 (38.8%)
# Score: 822.5
#
#
#=======================================
BSNT_00362___ 1 ATGGCATTAAAACTTCTAAAAAAACTGCTATTTGACCGCCCTCTAAAGAA 50
.|.|||||.| |.|.||.|..|||.|||||||||||.||.||.||
BL01719 1 -----GTGAAAACAT-TGATAAGATGGCTGTTTGACCGCCCGCTCAAAAA 44
BSNT_00362___ 51 CGG---CGTTATCTT-------AAATCATCAATACAAAATCGAA------ 84
.|| || |||| |.|| ||||||
BL01719 45 AGGAACCG---TCTTGGAGGGGAGAT------------ATCGAATCAACC 79
BSNT_00362___ 85 GAGTGCCTCGGTATGGGAGGCTACGGTTTGGTTTATTTGTGCACCGATAT 134
|.||| |||||.|||||...||||||..| ||| ||||
BL01719 80 GTGTG-CTCGGGATGGGCAACTACGGCAT------------CAC--ATAT 114
BSNT_00362___ 135 CCTAACTCAAACACCTT-----AT-----------GTCTTAAAACAGCTT 168
|.| ..|.||.|.||| || |||.|.||.||||
BL01719 115 CTT--GCCGAAGAACTTGGAAGATCCGGTTTCCGCGTCATCAAGCAGC-- 160
BSNT_00362___ 169 CGGCCGACAAAAGCGAAAAAGGAAAAAGAGAAAGTCCGATTCCAACA-GG 217
||.|||||| .||||| || ||
BL01719 161 -----------AGAGAAAAA--CAAAAG-----------------CATGG 180
BSNT_00362___ 218 AAATAAAACTGC----------TCAATAGCATTCACCACCCGC------- 250
|.||.|..|.|| |||| ||||
BL01719 181 ACATCAGCCGGCCGGCGGTCTTTCAA-------------CCGCGAGGCTG 217
BSNT_00362___ 251 AAATT----------------------CCGGG---CTTCATAGATGA-GT 274
||||| |||.| |.|| ||.|||| ||
BL01719 218 AAATTTTGCGGGAATTGGATCTGCCTGCCGCGCCCCGTC-TATATGAGGT 266
BSNT_00362___ 275 TCATCATAGA-CGGACAG---GCTTATTAT-GTCATGCAGTTCATTGAGG 319
.|.|| || |||.|.| ||...|||| ||.|||.|||..|||||.|
BL01719 267 GCTTC---GAGCGGCCGGCGAGCGGTTTATCGTAATGGAGTATATTGAAG 313
BSNT_00362___ 320 GAGAGAATATAGAAGAATTATTATTTT--------------TTCGA-AAA 354
||.|.|...|.|||||.||..|.|||| ||.|| .||
BL01719 314 GAAAAACGTTTGAAGATTTGCTCTTTTATGATGGGCGTGTCTTTGATGAA 363
BSNT_00362___ 355 CAGC---CGTTCACAGAGCTTATGGCATTACAACTGATTTCGCAGCTGCT 401
|||| ||.|| |||.|||.|.| |.||.||||
BL01719 364 CAGCAAACGATC----AGCATATTGAA--------------GGAGGTGCT 395
BSNT_00362___ 402 TGAGA---TTATAGAATACCTGCATGATCGCC------TTATCTTCCACA 442
|.|.| || |..||.|.|.|..||| ||| |.|||.
BL01719 396 TCACAGCGTT------TCACTTCTTCACAGCCGGGGGATTA---TTCACC 436
BSNT_00362___ 443 GCGACATCAGGACGCCTAATATCATCATCAAT-GACGGCAGGCTCTGCCT 491
|.|||.|.||||..||.|||.|.||..|.||| || ||.|.|.||.||.|
BL01719 437 GGGACTTGAGGATCCCAAATTTGATTGTGAATCGA-GGAACGATCCGCAT 485
BSNT_00362___ 492 CCTCGATTTCGGCCTTGCCAAACAATTGACTCCTGA---AGAAATGGAGG 538
|.|.||||||||.||.|| .||.|.||||| |||.| |
BL01719 486 CATAGATTTCGGACTGGC-------ATGCCGCCTGACTGAGAGA-----G 523
BSNT_00362___ 539 AA-------ATAA-AGGTAC---GAAAACAGGATGACTTC-TTCGATCTC 576
|| |||| .||.|| |||||.|.|.||| |.| |.|..|.||
BL01719 524 AACGCGTTGATAACCGGCACCCGGAAAAAAAGCTGA-TGCGTGCAGTTTC 572
BSNT_00362___ 577 GGAGAAACG---CTGTTA----------------------TTCCTGCTGT 601
.|..|||.| ||.||| ||.||.||||
BL01719 573 AGTCAAAAGTGACTTTTATGCGTTAGGGCATTTTGCATTGTTTCTCCTGT 622
BSNT_00362___ 602 ACTCTCAATATAA------------AGGAAAAAA--------GAAGAAAA 631
|||| |..|.|.| |||||.||| ||||||.|
BL01719 623 ACTC-CGGTTTTACCCCGTCCGACGAGGAAGAAAAATGCTGGGAAGAAGA 671
BSNT_00362___ 632 --ACGGCA------CTTGGCTGGAGGAATTAACACTG-ACAAAGGAAGTA 672
.|.||| ||.||| ||||..||| .|...|||||
BL01719 672 GCTCAGCATATCGTCTGGGC--------TTAAATCTGTTCTGCGGAAG-- 711
BSNT_00362___ 673 ACCCTGCTGCTGAAAAGATT-AT--------TGGGCATCGAGGAAG--AG 711
.|||||| ||||| || ||.||.| |..|||| |.
BL01719 712 ---ATGCTGC-----AGATTGATCTCCCGTATGAGCGT-GCAGAAGACAT 752
BSNT_00362___ 712 TATCAGCACACCGCTTCCATT-------CGCGAGGATCTAAA-------- 746
||||.| ||.||..||| || |.||| |||
BL01719 753 TATCGG-----CGATTTGATTTCCTGTACG-GCGGA---AAAGAAGAAGC 793
BSNT_00362___ 747 --CCGGGCCATTCAATCGGTCACATAA 771
||| .||.||
BL01719 794 TGCCG----TTTTAA------------ 804
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