Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00568 and BL01709
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_00568___ycgM.1.5803.seq
# -bsequence dna-align/BL01709___ycgM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00568___ycgM-BL01709___ycgM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00568___ycgM-BL01709___ycgM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00568___ycgM
# 2: BL01709___ycgM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 941
# Identity: 677/941 (71.9%)
# Similarity: 677/941 (71.9%)
# Gaps: 52/941 ( 5.5%)
# Score: 2333.5
#
#
#=======================================
BSNT_00568___ 1 ------GTGATCACAAGAGATTTTTTCTTATTTTTATCCAAAAGCGGCTT 44
|||||.||||||||.||||||.||||.|||||.||||||.||.|
BL01709___ycg 1 ATGGAAGTGATAACAAGAGACTTTTTCCTATTCTTATCTAAAAGCAGCAT 50
BSNT_00568___ 45 TCTCAATAAAATGGCGAGGAACTGGGGAAG--CCGGGTAGCAGCGGGTAA 92
.||.|||....|||||||.||.|||||.|| || ||.||..|.||.||
BL01709___ycg 51 CCTGAATCGCCTGGCGAGAAATTGGGGGAGTTCC--GTCGCGACCGGAAA 98
BSNT_00568___ 93 AATTATCGGCGGGAATGACTTTAACAG-TTCAATCCCGACCATTCGACA- 140
|||||||||.||.||.||.|||.| || ||||||.||||..||| |
BL01709___ycg 99 AATTATCGGAGGAAAAGATTTTGA-AGCTTCAATTCCGATTATT----AA 143
BSNT_00568___ 141 ---GCTTAACAGCCAAGGCTTGTCAGTTACTGTCGATCATTTAGGCGAGT 187
|||||||...|||||..||.|.||.||.||||||||.||.|||||.|
BL01709___ycg 144 GGGGCTTAACGAACAAGGGCTGACTGTGACAGTCGATCACTTGGGCGAAT 193
BSNT_00568___ 188 TTGTGAACAGCGCCGAGGTCGCACGGGAGCGTACGGAAGAGTGCATTCAA 237
|||||||||||...||.||||||.|||||||.|||.|.||.|||||||..
BL01709___ycg 194 TTGTGAACAGCAGGGAAGTCGCAAGGGAGCGCACGCAGGAATGCATTCGG 243
BSNT_00568___ 238 ACCATTGCGACCATCGCGGA----TCAGG---AGCTGAACTCACACGTTT 280
.||||| || ||.|| ||||| ||||.||.|||||.||||
BL01709___ycg 244 GCCATT-----CA--GCTGATTGCTCAGGAACAGCTTAATTCACATGTTT 286
BSNT_00568___ 281 CTTTAAAAATGACGTCTTTAGGTTTGGATATAGATATGGATTTGGTGTAT 330
|.|||||.||||||||.||.||..|.|||||.||..|.||..|.||....
BL01709___ycg 287 CATTAAAGATGACGTCATTGGGACTCGATATTGACCTTGACCTTGTCAGG 336
BSNT_00568___ 331 GAAAATATGACAAAAATCCTTCAGACG-GCCGAGAAACATAAAATCATGG 379
||.|||||||..|..||.||..| |.| ||||||.|.||..||.|.||||
BL01709___ycg 337 GATAATATGAACAGTATTCTGGA-ATGTGCCGAGCAGCACCAAGTGATGG 385
BSNT_00568___ 380 TCACCATTGACATGGAGGACGAAGTCAGATGCCAGAAAACGCTTGATATT 429
||||.||.||.||||||||.|||||..|.|||||.||.||||||||..|.
BL01709___ycg 386 TCACAATCGATATGGAGGATGAAGTGCGCTGCCAAAAGACGCTTGACCTC 435
BSNT_00568___ 430 TTCAAAGATTTCAGAAAGAAATACGAGCATGTGAGCACAGTGCTGCAAGC 479
||.||.||.|||||..|||||||||||.||||.|||||.||.|||||.||
BL01709___ycg 436 TTTAAGGAGTTCAGGCAGAAATACGAGTATGTCAGCACCGTCCTGCAGGC 485
BSNT_00568___ 480 CTATCTGTACCGGACGGAAAAAGACATTGACGATTTGGATTCTTTAAACC 529
.|||.||||||||||.|||.|.||..|.||.||..|..||||.|||||.|
BL01709___ycg 486 TTATTTGTACCGGACCGAACAGGATTTGGAGGAGCTCAATTCATTAAATC 535
BSNT_00568___ 530 CGTTCCTTCGCCTTGTAAAAGGAGCTTATAAAGAATCAGAAAAAGTAGCT 579
||||..|.||.|||||.||.|||||||||||||||||....|||||.|||
BL01709___ycg 536 CGTTTTTCCGTCTTGTGAAGGGAGCTTATAAAGAATCGCCGAAAGTGGCT 585
BSNT_00568___ 580 TTCCCGGAGAAAAGCGATGTCGATGAAAATTACAAAAAAATCATCCGAAA 629
|||||.||.||||..|||||.|||||.|||||||||||..||||...|||
BL01709___ycg 586 TTCCCTGACAAAAAGGATGTGGATGAGAATTACAAAAAGCTCATTAAAAA 635
BSNT_00568___ 630 GCAGCTCTTAAACGGTCACTATACAGCGATTGCCACACATGACGACAAAA 679
||||||..|.|.|||.||.||.|||||.||.||.||.|||||||||||.|
BL01709___ycg 636 GCAGCTGCTGAGCGGCCATTACACAGCTATCGCAACTCATGACGACAAGA 685
BSNT_00568___ 680 TGATCGACTTT--ACAAAGCAGCTTGCCAAGGAACATGGCATTGCCAATG 727
||||.|| ||| .||||| |..||||.||.||.|||...||.|.|||.|
BL01709___ycg 686 TGATTGA-TTTCGCCAAAG-AAATTGCGAATGAGCATCAAATCGGCAAAG 733
BSNT_00568___ 728 ACAAGTTTGAATTTCAGATGCTGTACGGCATGCGGTC-GCAAACCCAGCT 776
||...||.||||||||.|||||||||||.||||| | |||| |.||
BL01709___ycg 734 ACCGCTTCGAATTTCAAATGCTGTACGGGATGCG--CAGCAA----AACT 777
BSNT_00568___ 777 CAGC-----CTCGTAAAAGAAGGTTATAACATGAGAGTCTACCTGCCATA 821
|||| ||.||.||.|||||.||.||.|||.|.||.||.||.||.||
BL01709___ycg 778 CAGCTGGAACTGGTGAAGGAAGGCTACAATATGCGCGTGTATCTTCCTTA 827
BSNT_00568___ 822 CGGCGAGGATTGGTACGGCTATTTTATGAGACGCCTTGCAGAACGTCCGT 871
|||.||.||.||||||||.||.|||||||||||.|||||.||.||.||..
BL01709___ycg 828 CGGAGACGACTGGTACGGATACTTTATGAGACGGCTTGCTGAGCGGCCTG 877
BSNT_00568___ 872 CAAACATTGCATTTGCTTTCAAAGGAATGACAAAGAAGTAA 912
|.|||||.||.|||||.||.|||||.|||||.|||||.|||
BL01709___ycg 878 CCAACATCGCTTTTGCGTTTAAAGGCATGACGAAGAAATAA 918
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