Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00568 and BL01709

See Amino acid alignment / Visit BSNT_00568 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_00568___ycgM.1.5803.seq
#    -bsequence dna-align/BL01709___ycgM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00568___ycgM-BL01709___ycgM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00568___ycgM-BL01709___ycgM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00568___ycgM
# 2: BL01709___ycgM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 941
# Identity:     677/941 (71.9%)
# Similarity:   677/941 (71.9%)
# Gaps:          52/941 ( 5.5%)
# Score: 2333.5
# 
#
#=======================================

BSNT_00568___      1 ------GTGATCACAAGAGATTTTTTCTTATTTTTATCCAAAAGCGGCTT     44
                           |||||.||||||||.||||||.||||.|||||.||||||.||.|
BL01709___ycg      1 ATGGAAGTGATAACAAGAGACTTTTTCCTATTCTTATCTAAAAGCAGCAT     50

BSNT_00568___     45 TCTCAATAAAATGGCGAGGAACTGGGGAAG--CCGGGTAGCAGCGGGTAA     92
                     .||.|||....|||||||.||.|||||.||  ||  ||.||..|.||.||
BL01709___ycg     51 CCTGAATCGCCTGGCGAGAAATTGGGGGAGTTCC--GTCGCGACCGGAAA     98

BSNT_00568___     93 AATTATCGGCGGGAATGACTTTAACAG-TTCAATCCCGACCATTCGACA-    140
                     |||||||||.||.||.||.|||.| || ||||||.||||..|||    | 
BL01709___ycg     99 AATTATCGGAGGAAAAGATTTTGA-AGCTTCAATTCCGATTATT----AA    143

BSNT_00568___    141 ---GCTTAACAGCCAAGGCTTGTCAGTTACTGTCGATCATTTAGGCGAGT    187
                        |||||||...|||||..||.|.||.||.||||||||.||.|||||.|
BL01709___ycg    144 GGGGCTTAACGAACAAGGGCTGACTGTGACAGTCGATCACTTGGGCGAAT    193

BSNT_00568___    188 TTGTGAACAGCGCCGAGGTCGCACGGGAGCGTACGGAAGAGTGCATTCAA    237
                     |||||||||||...||.||||||.|||||||.|||.|.||.|||||||..
BL01709___ycg    194 TTGTGAACAGCAGGGAAGTCGCAAGGGAGCGCACGCAGGAATGCATTCGG    243

BSNT_00568___    238 ACCATTGCGACCATCGCGGA----TCAGG---AGCTGAACTCACACGTTT    280
                     .|||||     ||  ||.||    |||||   ||||.||.|||||.||||
BL01709___ycg    244 GCCATT-----CA--GCTGATTGCTCAGGAACAGCTTAATTCACATGTTT    286

BSNT_00568___    281 CTTTAAAAATGACGTCTTTAGGTTTGGATATAGATATGGATTTGGTGTAT    330
                     |.|||||.||||||||.||.||..|.|||||.||..|.||..|.||....
BL01709___ycg    287 CATTAAAGATGACGTCATTGGGACTCGATATTGACCTTGACCTTGTCAGG    336

BSNT_00568___    331 GAAAATATGACAAAAATCCTTCAGACG-GCCGAGAAACATAAAATCATGG    379
                     ||.|||||||..|..||.||..| |.| ||||||.|.||..||.|.||||
BL01709___ycg    337 GATAATATGAACAGTATTCTGGA-ATGTGCCGAGCAGCACCAAGTGATGG    385

BSNT_00568___    380 TCACCATTGACATGGAGGACGAAGTCAGATGCCAGAAAACGCTTGATATT    429
                     ||||.||.||.||||||||.|||||..|.|||||.||.||||||||..|.
BL01709___ycg    386 TCACAATCGATATGGAGGATGAAGTGCGCTGCCAAAAGACGCTTGACCTC    435

BSNT_00568___    430 TTCAAAGATTTCAGAAAGAAATACGAGCATGTGAGCACAGTGCTGCAAGC    479
                     ||.||.||.|||||..|||||||||||.||||.|||||.||.|||||.||
BL01709___ycg    436 TTTAAGGAGTTCAGGCAGAAATACGAGTATGTCAGCACCGTCCTGCAGGC    485

BSNT_00568___    480 CTATCTGTACCGGACGGAAAAAGACATTGACGATTTGGATTCTTTAAACC    529
                     .|||.||||||||||.|||.|.||..|.||.||..|..||||.|||||.|
BL01709___ycg    486 TTATTTGTACCGGACCGAACAGGATTTGGAGGAGCTCAATTCATTAAATC    535

BSNT_00568___    530 CGTTCCTTCGCCTTGTAAAAGGAGCTTATAAAGAATCAGAAAAAGTAGCT    579
                     ||||..|.||.|||||.||.|||||||||||||||||....|||||.|||
BL01709___ycg    536 CGTTTTTCCGTCTTGTGAAGGGAGCTTATAAAGAATCGCCGAAAGTGGCT    585

BSNT_00568___    580 TTCCCGGAGAAAAGCGATGTCGATGAAAATTACAAAAAAATCATCCGAAA    629
                     |||||.||.||||..|||||.|||||.|||||||||||..||||...|||
BL01709___ycg    586 TTCCCTGACAAAAAGGATGTGGATGAGAATTACAAAAAGCTCATTAAAAA    635

BSNT_00568___    630 GCAGCTCTTAAACGGTCACTATACAGCGATTGCCACACATGACGACAAAA    679
                     ||||||..|.|.|||.||.||.|||||.||.||.||.|||||||||||.|
BL01709___ycg    636 GCAGCTGCTGAGCGGCCATTACACAGCTATCGCAACTCATGACGACAAGA    685

BSNT_00568___    680 TGATCGACTTT--ACAAAGCAGCTTGCCAAGGAACATGGCATTGCCAATG    727
                     ||||.|| |||  .||||| |..||||.||.||.|||...||.|.|||.|
BL01709___ycg    686 TGATTGA-TTTCGCCAAAG-AAATTGCGAATGAGCATCAAATCGGCAAAG    733

BSNT_00568___    728 ACAAGTTTGAATTTCAGATGCTGTACGGCATGCGGTC-GCAAACCCAGCT    776
                     ||...||.||||||||.|||||||||||.|||||  | ||||    |.||
BL01709___ycg    734 ACCGCTTCGAATTTCAAATGCTGTACGGGATGCG--CAGCAA----AACT    777

BSNT_00568___    777 CAGC-----CTCGTAAAAGAAGGTTATAACATGAGAGTCTACCTGCCATA    821
                     ||||     ||.||.||.|||||.||.||.|||.|.||.||.||.||.||
BL01709___ycg    778 CAGCTGGAACTGGTGAAGGAAGGCTACAATATGCGCGTGTATCTTCCTTA    827

BSNT_00568___    822 CGGCGAGGATTGGTACGGCTATTTTATGAGACGCCTTGCAGAACGTCCGT    871
                     |||.||.||.||||||||.||.|||||||||||.|||||.||.||.||..
BL01709___ycg    828 CGGAGACGACTGGTACGGATACTTTATGAGACGGCTTGCTGAGCGGCCTG    877

BSNT_00568___    872 CAAACATTGCATTTGCTTTCAAAGGAATGACAAAGAAGTAA    912
                     |.|||||.||.|||||.||.|||||.|||||.|||||.|||
BL01709___ycg    878 CCAACATCGCTTTTGCGTTTAAAGGCATGACGAAGAAATAA    918


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