Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00567 and BL01708
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_00567___ycgL.1.5803.seq
# -bsequence dna-align/BL01708___ycgL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00567___ycgL-BL01708___ycgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00567___ycgL-BL01708___ycgL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00567___ycgL
# 2: BL01708___ycgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 920
# Identity: 548/920 (59.6%)
# Similarity: 548/920 (59.6%)
# Gaps: 208/920 (22.6%)
# Score: 1643.0
#
#
#=======================================
BSNT_00567___ 1 GTGAAAAGCCGCCGCATATCATCAGGCGGTTTTTTTCTGCAAACTGCCGG 50
BL01708___ycg 0 -------------------------------------------------- 0
BSNT_00567___ 51 AATGAGAACAGACTGGAGACGAATAGATATGAAACAAAGAATCATTGATG 100
|||| ||||| |||||.| |||||..|.|||
BL01708___ycg 1 -ATGA-AACAG--------CGAATTG----------AAGAAGAACTGA-- 28
BSNT_00567___ 101 AATTAAAACGGATCG-AGCAGTCATATGGAGTCAAAATCGTGTATGCCGT 149
||||| ||.| |||| .|||||||.|||||||||.|.||||||||
BL01708___ycg 29 ----AAAAC--ATTGAAGCA-ACATATGGCGTCAAAATCCTCTATGCCGT 71
BSNT_00567___ 150 CGAGTCAGGAAGCCGCGCATGGGGATTTCCGTCGCAGGATAGTGATTACG 199
.||.||.||.|||.|.||||||||..||||.||.|||||.||.|||||||
BL01708___ycg 72 TGAATCTGGCAGCAGGGCATGGGGCCTTCCTTCACAGGACAGCGATTACG 121
BSNT_00567___ 200 ACGTCCGCTTTATTTATGTGCCGAAAAAGGAGTGGTATTTTTCAATTGA- 248
|||||.|.|||||||||||.|...||||.||.||||||.|.||||||||
BL01708___ycg 122 ACGTCAGATTTATTTATGTCCATCAAAAAGACTGGTATCTGTCAATTGAT 171
BSNT_00567___ 249 GCAGGAGCGTGATGTCATTGAGGAACCGATTCACGATTTGCTGGATATCA 298
||| .||||.|||||.|||||....||||||.||||||..||.|||||||
BL01708___ycg 172 GCA-AAGCGCGATGTGATTGAACTGCCGATTGACGATTCTCTCGATATCA 220
BSNT_00567___ 299 GCGGCTGGGAGCTGAGAAAAACGCTTAGGCTTTTCAAAAAGTCAAACCCT 348
|||||||||||||||.||||.||.|.|||||.|||...||.|||||.|||
BL01708___ycg 221 GCGGCTGGGAGCTGACAAAAGCGTTAAGGCTGTTCCGGAAATCAAATCCT 270
BSNT_00567___ 349 CCGCTCCTCGAATGGCTGTCCTCAGACATTGTGTATTACGAAGCATTTAC 398
|||||.|||||||||||.||.||.|..|..||.|||||.|||||.|.|.|
BL01708___ycg 271 CCGCTTCTCGAATGGCTCTCTTCGGGAACCGTTTATTATGAAGCCTATTC 320
BSNT_00567___ 399 GACCGCAGA---------GCAGTTAAGAAAACTGCGCACGGAGGCATTT- 438
|...||||| ||.|.|.| |||.|.|||| |.|||
BL01708___ycg 321 GCTGGCAGAAAAAATGAGGCGGCTCA-AAAGCCGCGC-------CTTTTC 362
BSNT_00567___ 439 --AAG---CCTGAAGCAAGCGTGTATCACTATATCAATATGGCGAGAAGG 483
.|| ||||.| ||||.||.|||.|||||||||||....|.
BL01708___ycg 363 TCCAGTCTCCTGTA-------TGTACCATTATCTCAATATGGCGTCGGGA 405
BSNT_00567___ 484 AACGTCAAAGATTATCTACAAGGAC-----AAGAGGTCAAAATTAAAAAG 528
||..||..|||.||.|| ||| ||||.||.|||||.|||||.
BL01708___ycg 406 AATTTCCGAGACTACCT-----GACGCGTGAAGAAGTGAAAATCAAAAAA 450
BSNT_00567___ 529 TACTTCTACGTTCTTCGGCCTATTTTGGCCTGCCAATGGATTGAAAAGCA 578
||.||.||.||.||.||.||.|||.||||.|||||.|||||.||||..|.
BL01708___ycg 451 TATTTTTATGTACTCCGCCCGATTCTGGCTTGCCAGTGGATCGAAAGCCG 500
BSNT_00567___ 579 CGGAACCATACCGCCAATGGACTTTACTGTTTTGATGAATGAACTTGTTC 628
|.|.||..|.||.||.||.||.|||...||||||.|..|.||||| |.|
BL01708___ycg 501 CCGGACGGTTCCTCCGATTGAATTTCAGGTTTTGCTTGACGAACT--TAC 548
BSNT_00567___ 629 GTGAACCCG---AGCTGAAGGCTGAAATGGAAACC-----TTGCTTGAAC 670
| |||..|| .||||||..|.||||| || .||||||||.
BL01708___ycg 549 G-GAAGACGGACCGCTGAAAACAGAAAT-----CCATCAGCTGCTTGAAA 592
BSNT_00567___ 671 GG-AAAAGAAGAGGGGAAGAG------CTTG-ACCTCGAAGCAAGAATCG 712
|| ||||||| ||||||.||| |||| |||||.||.|...|.||
BL01708___ycg 593 GGAAAAAGAA-AGGGGAGGAGTTCAATCTTGAACCTCAAAACCCCATTC- 640
BSNT_00567___ 713 ATGTAATTCACCAATTCATTGAAACG-GAAATCGAAAGAATCATGGAAGC 761
|.|||.||||.|||| |.|| |||.|.| |||
BL01708___ycg 641 ------TCCACGAATTTATTG-AGCGTGAACTTG-------------AGC 670
BSNT_00567___ 762 GGCAAAAGAACTG-----AAGGCAGAGAAAAAAGAT-ATG-ACATCTGA- 803
|||...|| ||.| ||.|||.|.||||..||| ||| |.||||||
BL01708___ycg 671 GGCTTCAG-ACAGTTGCCAAAGCATATAAAACGGATCATGAAGATCTGAC 719
BSNT_00567___ 804 -------ATTGAACCGTTTGCTTTTGA-ATACGGTTGAAGAAGTGTGG-- 843
.||| |||||.|| |||.|| |.|||.|.||.||.||||||
BL01708___ycg 720 GCAGGAGCTTG-ACCGTCTG-TTTAGAGAAACGCTAGACGAGGTGTGGGC 767
BSNT_00567___ 844 --AAGGATGGAGGAAGCTGA 861
||
BL01708___ycg 768 ATAA---------------- 771
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