Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00421 and BL01683
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00421___ybgA.1.5803.seq
# -bsequence dna-align/BL01683___ybgA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00421___ybgA-BL01683___ybgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00421___ybgA-BL01683___ybgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00421___ybgA
# 2: BL01683___ybgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 872
# Identity: 440/872 (50.5%)
# Similarity: 440/872 (50.5%)
# Gaps: 307/872 (35.2%)
# Score: 866.5
#
#
#=======================================
BSNT_00421___ 1 ATG-----------ACAGCTTTATATTCTGTTATCAAGTTTAAA----AT 35
||| ||||||..|.|.|| |..||||| ||
BL01683___ybg 1 ATGGCGAAACAACCACAGCTCCACAGTC--------AAATTAAACAAGAT 42
BSNT_00421___ 36 CATTG-AGTTAA---TTAAATCGGGCAAATATCAGGCGAATGATCAGC-- 79
|||| ||.||| |.|||.| ||..|.||||.|.| |..||||
BL01683___ybg 43 -ATTGTAGATAAGATTGAAAGC-GGTTATTATCCGCC----GGGCAGCCT 86
BSNT_00421___ 80 --TGCCGACGGAGAGTGAGTTTTGCGAACAATATGATGTCAGCAGAACAA 127
|||||||||||...|||||||||.||...||||||||||||.|.||.|
BL01683___ybg 87 GTTGCCGACGGAGTCCGAGTTTTGCAAAATTTATGATGTCAGCCGGACGA 136
BSNT_00421___ 128 --CTGTGAGACTGGCTCTGCAGCAGCTAGAGCTT---GA--GGGATATAT 170
|||.| ||| .||.|||.|.||..| |||| || |||.||| |
BL01683___ybg 137 CGCTGCG-GAC-CGCGCTGAATCATTT---GCTTATGGAAGGGGCTAT-T 180
BSNT_00421___ 171 TA---AAAGAATTCAAGGAAAAGGGACATTTGTATCGGCGGCAAA--AAT 215
|| |||| ||.||||||||||||||||| ||.|||| ||.
BL01683___ybg 181 TACCGAAAG----CAGGGAAAAGGGACATTTGT-----CGCCAAAGGAAA 221
BSNT_00421___ 216 ACAAACGCCGATTCCGCATAAGATTACGA---------GCTTTGCAGAAC 256
|..||.||.||| |.||||.| |.| |||.||||||||
BL01683___ybg 222 AGTAAAGCAGAT----CTTAAGCT--CCAGCAGCCTCCGCTATGCAGAAC 265
BSNT_00421___ 257 AAATGAGAGGACTTC---GTTCTGAATC-AAAAGTGCTTGAGCTTGTGGT 302
||.||| ||| .|| |.|.|.||.| |||| |..||.|||| |
BL01683___ybg 266 AATTGA-AGG--CTCAAGGCTTTAAACCGAAAA----TCAAGGTTGT--T 306
BSNT_00421___ 303 GATTCCTGCCGATCATTCCATCGCCGAGCTTTTGAAAA--TGAAAGA--- 347
|||| |||..|..|| |..|||| |..||||| |..|| |
BL01683___ybg 307 GATT--TGCAAAAAAT---AAAGCCG----TCCGAAAAACTCCAA-ACCC 346
BSNT_00421___ 348 ------GAAT-GAACCTGTCAACAAGCTTGTC------------AGAGTC 378
|||| ||..||| ||||| .|.||| |||.||
BL01683___ybg 347 GTCTCGGAATCGACGCTG--AACAA-ATGGTCTATCAAGTAAAAAGAATC 393
BSNT_00421___ 379 AGATACGCCGAGGGGGAA-----CC--TTTG---CAG----TATCA---- 410
.|.||.||.||.|..||| || |||| ||| |||||
BL01683___ybg 394 CGCTATGCAGACGATGAAGAAATCCAGTTTGAAACAGCCTATATCAGAAC 443
BSNT_00421___ 411 -TACCTCATATATTCCCTGGAAG--GCGGCACCGGGGCTGGCG------- 450
.|.|||.|| ||| |||| .|||.| |...|||||
BL01683___ybg 444 GGATCTCGTA----CCC--GAAGTAACGGAA---GAAATGGCGAATATCT 484
BSNT_00421___ 451 --------CAGGAGGAATGCACCGGCTCGCTGTTTGAATTGTTAAGGACA 492
||| ||||.|.||..|| |||
BL01683___ybg 485 CACTTTACCAG------TGCATCAGCAGGC--------------AGG--- 511
BSNT_00421___ 493 AAATACAATATTGAA--ATCAGCAGGGGCACGGAATC--GATCGAACCGA 538
.|.||||.|||.|| |.||| |||.||| |||| |||.| .||
BL01683___ybg 512 -GAAACAACATTAAAAGAACAG-AGGAGCA---AATCAAGATTG---TGA 553
BSNT_00421___ 539 TTTTAACGGATGAAACGATCAGCGGACAC-------TTATTAACCAATGT 581
||| |.|||||...||| .|.|||| .|||||..|||
BL01683___ybg 554 TTT---CTGATGAGGAGAT---TGCACACCATTTAAATATTACACAA--- 594
BSNT_00421___ 582 CGGAGCGCC-TGCGTTTTTATCAGAATCCCTTACCTATGATAAAAA---- 626
||..|||| ||| |..|||| ||.|.|.| .|||.|
BL01683___ybg 595 -GGCACGCCTTGC-----TTCCAGA------TATCGACG-CAAACATTTT 631
BSNT_00421___ 627 -------TGAAGAAGTGGTGGAATATGC----GCAAATTATTACACGGGG 665
||||||.||.||.||.|||.| ||..|||.| ||.||
BL01683___ybg 632 TGGCGTCTGAAGAGGTTGTCGAGTATTCTATGGCCTATTTT----CGCGG 677
BSNT_00421___ 666 AGACCGAACGAAATTCACCGTAGAACAGTCATATCATTCAT--AA----- 708
.||||| |||.| ||| || ||||| ||
BL01683___ybg 678 TGACCG------------CGTTG---AGT----TC-TTCATTGAACGCGA 707
BSNT_00421___ 708 ---------------------- 708
BL01683___ybg 708 TTATGGACAAAGGGGGAAATGA 729
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