Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00730 and BL01660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_00730___ydaB.1.5803.seq
# -bsequence dna-align/BL01660___ydaB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00730___ydaB-BL01660___ydaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00730___ydaB-BL01660___ydaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00730___ydaB
# 2: BL01660___ydaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1675
# Identity: 969/1675 (57.9%)
# Similarity: 969/1675 (57.9%)
# Gaps: 326/1675 (19.5%)
# Score: 2473.5
#
#
#=======================================
BSNT_00730___ 1 ATGGA-AACATTACAGCATCTGATTCTGCATGACATGCCGAATAGCGAAG 49
|.|| .|||.|.|||||..|.||....|||.|.||| |
BL01660___yda 1 -TTGAGTACACTTCAGCAATTAATCAATCATCATATG------------G 37
BSNT_00730___ 50 AAA---TAGA--GGCTGTAAAAA-------GCGGAGACCATACACTGACA 87
||| .||| ||.||.||..| |.|||||.|..||..|.||.
BL01660___yda 38 AAACGTCAGATGGGTTGGAAGCATTGTCCGGAGGAGATCGAACGTTTACG 87
BSNT_00730___ 88 TATAAAGGTTACCGTA-----AACGGATTAATCAGCTGGCGAATGCCATG 132
|..|||| |||| |||||.|.||.||||||||..||....||
BL01660___yda 88 TTCAAAG-----CGTATCACCAACGGGTGAACCAGCTGGCTCATTATCTG 132
BSNT_00730___ 133 CTTCAAAAAGGAATTCAAAAGGGCGACCGTGTTGCATTGC-----TTTGC 177
||..|..|.||..|||||||.||.|||| .|||.|| |.||.
BL01660___yda 133 CTGGAGGAGGGTGTTCAAAAAGGAGACC-----ACATCGCGGTTTTATGT 177
BSNT_00730___ 178 AAAAACGGCCA------TCCCGCATCAACTGTTATGTTCGCCGCGCTTGA 221
|||||....|| ||||| ||| ||.||.|.||..|.|||.|
BL01660___yda 178 AAAAATAATCATCATTTTCCCG--TCA----TTTTGCTGGCGTCTCTTAA 221
BSNT_00730___ 222 AATAGGTGCTGTTGTCGTACCTGTCAGCTGGCAGCTGAAACCATATGAAA 271
|||.||.||....|||||.||..|.|||||||||||||.|.|.||||||.
BL01660___yda 222 AATCGGAGCGACAGTCGTGCCGTTAAGCTGGCAGCTGACATCGTATGAAT 271
BSNT_00730___ 272 TGACAGGCATTTTAAAAGCAAGTG--AACCGAAAGCGATGTTTTACGGAG 319
|.|.|||.||.||.|| |||.|| ..|||||.|.|||||||||.|...
BL01660___yda 272 TAAAAGGAATCTTGAA--CAACTGCCGGCCGAAGGTGATGTTTTATGACT 319
BSNT_00730___ 320 CGGAGTTTAAAGAGATACT-----------------GGATGAAGTTCTAC 352
.|||.|||...||.||||| .|.|..||||||.|
BL01660___yda 320 TGGAATTTGCCGATATACTAACGCCGCTCCGCGAACAGCTTCAGTTCTGC 369
BSNT_00730___ 353 CTGA--ATTGTCCTCACTGTGTGTAACAATGGAAACAGGA---------- 390
|||| |||| .|..|.|||....|||| ||||.||
BL01660___yda 370 CTGATGATTG----AAGCGGGTGCGGGAATG--AACACGACTGAACAGTT 413
BSNT_00730___ 391 --ACAGCTTA---CGAAACA-TCTGCTGAA-TTTGAAGCGCTGTTTGCAG 433
|.|||||| ..||||| .|.|||||| .|.||||
BL01660___yda 414 TGAGAGCTTATTTAAAAACAGGCCGCTGAAGGTGGAAG------------ 451
BSNT_00730___ 434 GTCCTGATCATTTGCCAGAGACGGAAATGG-TTTCACCTGATGATACAGC 482
||||.||..||.|||||...||..||| |||.|
BL01660___yda 452 ---CTGAGCAGGTGACAGAGCATGATTTGGCTTTAA-------------- 484
BSNT_00730___ 483 ACTTCTGATGTTTACATCTGGAACAACGGGAAACCCGAAAAGATGCATGA 532
||.||||.||.||.||.||.|||||||||||||||.|.||||||.
BL01660___yda 485 -----TGCTGTTCACCTCGGGCACGACGGGAAACCCGAAAGGCTGCATGG 529
BSNT_00730___ 533 TTACACA--------TGGCGGCATA---TACAGA----TACGTTAAAAAA 567
|.|..|| ||||.||||| .||||| .|||| .|||
BL01660___yda 530 TCAACCACGGCAGTCTGGCCGCATACTTGACAGAGGTGAACGT---GAAA 576
BSNT_00730___ 568 TCCAA-CAGCTCAATAGCACGTATGAAGGGCCTTCGTTTTCTCGCGTGCC 616
||.|| |||||.||..||||| ||.|||.|.|||.|||
BL01660___yda 577 TCGAAGCAGCTGAAAGGCACG-------------CGCTTTTTAGCGAGCC 613
BSNT_00730___ 617 ATCCGATTTATCATACGAGTGCGCTCATTTGCATCATGCTT-------GG 659
|.|||.|.|||||||.|||..|||||| |.||||.|| ||
BL01660___yda 614 ACCCGCTCTATCATATGAGCTCGCTCA-----ACCATGTTTTTCAGGCGG 658
BSNT_00730___ 660 AACGTTTGCAGAAA---CAACCTTTGTGT-TTACAAAGGATCAAGATCCT 705
|.||||.||.|| | |||||.|.| || |..|||||..||.||.
BL01660___yda 659 --CTTTTGAAGGAATTGC--CCTTTATTTCTT--ATGGGATCCCGAACCG 702
BSNT_00730___ 706 GTTCACATGCTGAAGGTCATTGAAGAAGAGAAA---ATTCAGACCGTGAT 752
.||.|.||.|||.|||..||.| ||| ||||| |||||.|...||||
BL01660___yda 703 TTTGAAATCCTGCAGGAGATCG-AGA--AGAAACGCATTCATATGATGAT 749
BSNT_00730___ 753 GGCTCTTCCTGTGTTTTACACGTATTTGCTTGAGGCGTGGGAAACGCACC 802
|||..|||||....|.|||||.||..||||.|| |||||.|
BL01660___yda 750 GGCGTTTCCTTCCGTCTACACCTACATGCTGGA------GGAAATG---- 789
BSNT_00730___ 803 AAACTGACTTATC--TTC-ACTTGTTATTT----TAATG------ACAGG 839
||..||| ||| ||| ||.|||.||.| .|||| .|.||
BL01660___yda 790 -AAAAGAC--ATCCATTCGACCTGTCATCTGTGAAAATGCTTGTTTCCGG 836
BSNT_00730___ 840 CGGAACAAAAGTGCCGAGCAGCCTAATCCGCCGCTATCTTGAT------- 882
|||.||.||.|||||| .|||.|| ||||
BL01660___yda 837 CGGCACCAAGGTGCCG-----------GCGCGGC-----TGATTAAGGAG 870
BSNT_00730___ 883 ----AT-----TGGCATTCCGCTCGCGCATGGCTATGGAAGCACTGAGGC 923
|| |||.||...|.|.|.|||.||.||.||.|||||.||.||
BL01660___yda 871 TACAATGACCATGGAATCATGATGGTGCAGGGGTACGGCAGCACAGAAGC 920
BSNT_00730___ 924 TTGG--GGCATCAGCACATGGACGCCTGATATGGGAATGGATAAAGCGGC 971
.||| || |||||..||||..||||||.|||||...||||||||...|
BL01660___yda 921 ATGGACGG--TCAGCGTATGGCGGCCTGACATGGGCTGGGATAAAGTCAC 968
BSNT_00730___ 972 ATCTGCAGGAAAACC--TGTGGCAGGTGTTAAAGTC------AAAGTGGA 1013
.||.||.||.||.|| |...|| ||||| |||.|.||
BL01660___yda 969 TTCAGCCGGCAAGCCGATTCCGC--------AAGTCAGCATAAAAATCGA 1010
BSNT_00730___ 1014 AGATCCTCTGACCGGA-------GAAGAACTTCCTCAAGGAGAAATCGGC 1056
|||.||| || |||||.||.||....||||||.||||.
BL01660___yda 1011 AGACCCT-------GATACACATGAAGAGCTGCCGACGGGAGAAGTCGGA 1053
BSNT_00730___ 1057 GAAATCGTTGTTCATACTCCATTCT-TATTTAAAGGCTATGAAGACAATC 1105
|||.||||.| |||.|..||..|.| |.|||.||||.|||.|..|.||||
BL01660___yda 1054 GAAGTCGTCG-TCAAAAGCCCGTATGTTTTTGAAGGGTATTACCAAAATC 1102
BSNT_00730___ 1106 CTGAAGCAACAGCGAAA-GTGCTGCAAAATGGATGGTT-TAGAACCGGAG 1153
||...||.|| ||.||| ||||||.||.|.||.||||| || .|..||.|
BL01660___yda 1103 CTTCCGCCAC-GCAAAAGGTGCTGAAAGACGGCTGGTTCTA-TATGGGGG 1150
BSNT_00730___ 1154 ATTCAGGATATGTAGATGAAGATGGCTTTATTTTCATCACGGGACGCTAC 1203
|.||.||..|..|.||||||||.||.|||.|.|..||.||.||.||.||.
BL01660___yda 1151 ACTCCGGCAAACTCGATGAAGACGGATTTTTATATATTACCGGCCGGTAT 1200
BSNT_00730___ 1204 AAGGATGTCATTATTTACGGAGGCGATAACGTCTATCCTGATCAGGTTGA 1253
||.||.||||||.|.|||||||||||.|||.|.|||||.||.||.||.||
BL01660___yda 1201 AAAGACGTCATTGTCTACGGAGGCGACAACATTTATCCGGACCAAGTGGA 1250
BSNT_00730___ 1254 AGAAGTTATCCAGCAGATCCCGGGAATCCTTGAAACGGCTGTGGTCGGTA 1303
||||.|.|||.|.||..|.||.|||.|..|||||.|.||.||..||||..
BL01660___yda 1251 AGAAATCATCGATCAAGTGCCCGGAGTAGTTGAATCTGCCGTCATCGGCG 1300
BSNT_00730___ 1304 TTCCAGACCCGCTTTACGGTGAAAAACCGAAAGCTTTTATCGTGAAAAAT 1353
|.||.||.....|.|||||.||....||||..||.|.|.|.|||||||||
BL01660___yda 1301 TCCCGGATGAAATGTACGGCGAGGTTCCGAGGGCGTATGTGGTGAAAAAT 1350
BSNT_00730___ 1354 G---GCGGCCAGCGCATCACGGAAGAGGATGTCATCGCATTTTGTAAAGA 1400
| |||.| .||.|||.|.|.|||||..|.|||||.|.|||.|||||
BL01660___yda 1351 GAAAGCGCC---GGCCTCAAGAAGGAGGACATTATCGCGTATTGCAAAGA 1397
BSNT_00730___ 1401 ACGCCTGTCCGCTTACAAAATACCTGAAGTTGAATTTGTTAACGAACTGC 1450
.||||||||||..||.|||||.||||||.|.|..|||.|..||...||.|
BL01660___yda 1398 GCGCCTGTCCGACTATAAAATTCCTGAAATCGTCTTTATCGACAGCCTTC 1447
BSNT_00730___ 1451 CGAAAAACAACCTTGGCAA---GGTGAAAAAAGA----CGT--CCTGCGC 1491
|||||||||..||.||||| .||.|||||||| ||| .||| ||
BL01660___yda 1448 CGAAAAACAGGCTCGGCAAAATCGTCAAAAAAGATCTGCGTGAACTG-GC 1496
BSNT_00730___ 1492 AATCA---GGCTGT-ACATTCATAA 1512
|.||| |||.|| |
BL01660___yda 1497 AGTCAAAGGGCAGTGA--------- 1512
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