Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00439 and BL01646
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_00439___ycbD.1.5803.seq
# -bsequence dna-align/BL01646___ybcD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00439___ycbD-BL01646___ybcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00439___ycbD-BL01646___ybcD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00439___ycbD
# 2: BL01646___ybcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1495
# Identity: 1115/1495 (74.6%)
# Similarity: 1115/1495 (74.6%)
# Gaps: 56/1495 ( 3.7%)
# Score: 3994.5
#
#
#=======================================
BSNT_00439___ 1 ATGTCTGTGAT-CA-CGGAACAAAACACGTATCTCAACTTTATTAAAGGA 48
|||||||| | || |.|||...||.||||||.||||||||||.||.||.
BL01646___ybc 1 ATGTCTGT--TGCAGCTGAAAGTAAAACGTATTTCAACTTTATCAACGGC 48
BSNT_00439___ 49 GAGTGGGTTAAGTCTCAATCAGGCGATATGG-TCA-AGGTCGAAAACCCT 96
...|||||.|||.||.||||.||||..|||| .|| ||.|.| ||.||.
BL01646___ybc 49 CGCTGGGTGAAGGCTGAATCGGGCGGGATGGAACAGAGCTTG--AATCCG 96
BSNT_00439___ 97 GCCGAT-----GTGAATGACATTGTCGGATATGTACAGAATTCAACGGCT 141
||.||| | ||.||.|||||...|||.||.||.||..||..|
BL01646___ybc 97 GCAGATACACGG-----GATATCGTCGGGCTTGTGCAAAAATCTTCGATT 141
BSNT_00439___ 142 GAAGATGTGGAACGTGCCGTCGCCGCCGCCAATGAAGCCAAAACGGCTTG 191
||.|||||.||.||.||.||.|..||.|||||..|.|||||||.|||.||
BL01646___ybc 142 GAGGATGTAGACCGGGCAGTTGAAGCGGCCAAGCAGGCCAAAAAGGCGTG 191
BSNT_00439___ 192 GAGAAAGCTGACGGGTGCCGAGCGCGGCCAATACTTATACAAAACAGCGG 241
||||||||||.||||.||.||||||||.||||.|.|.|||||..|.||.|
BL01646___ybc 192 GAGAAAGCTGTCGGGCGCGGAGCGCGGTCAATTCCTTTACAAGGCCGCTG 241
BSNT_00439___ 242 ATATCATGGAGCAGCGCTTGGAGGAAATCGCCGCCTGTGCAACGCGTGAA 291
|.||||||||.||||||.|.||.|||||.||||..|||||.|||||||||
BL01646___ybc 242 ACATCATGGAACAGCGCCTCGATGAAATTGCCGAATGTGCGACGCGTGAA 291
BSNT_00439___ 292 ATGGGTAAAACATTGCCGGAAGCGAAGGGAGAAACAGCCCGTGGGATTGC 341
|||||.||||||.||||.|||||.||.||.||||||||.||.||.||.||
BL01646___ybc 292 ATGGGCAAAACACTGCCTGAAGCAAAAGGCGAAACAGCGCGGGGAATCGC 341
BSNT_00439___ 342 CATTCTGCGCTATTACGCCGGAGAGGGCATGCGAAAAACGGGTGACGTCA 391
.|||||..|.||.||.|||||||||||..||||.|||||.|||||.||.|
BL01646___ybc 342 GATTCTCAGATACTATGCCGGAGAGGGGCTGCGGAAAACAGGTGATGTGA 391
BSNT_00439___ 392 TTCCGTCTACTGACAAAGCCGCGCTCATGTTTACCACCCGTGTTCCGCTC 441
|||||||.||.||...|.||||..|.||||..||...|.|.||.||||||
BL01646___ybc 392 TTCCGTCGACCGATTCATCCGCTTTTATGTACACAGACAGGGTGCCGCTC 441
BSNT_00439___ 442 GGTGTGGTCGGCGTGATTTCTCCGTGGAACTTCCCAGTGGCGATTCCGAT 491
||.||.||||||||.||.||.||||||||.|||||.||.||.||.|||||
BL01646___ybc 442 GGCGTCGTCGGCGTCATCTCACCGTGGAATTTCCCTGTTGCCATCCCGAT 491
BSNT_00439___ 492 TTGGAAAATGGCGCCGGC----ATTGGTATACGGCAATACCGTTGTCATC 537
|||||||||||||||.|| ||| ||.||.|||||.||||||||.
BL01646___ybc 492 TTGGAAAATGGCGCCTGCTCTTATT----TATGGAAATACGGTTGTCATT 537
BSNT_00439___ 538 AAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTT 587
||.|||||.||.|||||.||.||.||.|||...|||.|.||..|.|||||
BL01646___ybc 538 AAGCCGGCTACGGAAACCGCAGTCACCTGCCTTAAGGTTATATCGTGCTT 587
BSNT_00439___ 588 TGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGG 637
|||.|||||.|||.|.||..||||.||..|||||..|||||||||.||||
BL01646___ybc 588 TGAAGAAGCAGGGATTCCCTCAGGCGTGGTCAATGCGGTGACAGGACCGG 637
BSNT_00439___ 638 GTTCTGTTGTCGGTCAGGGGCTTGCTGAGCATGACGG-TGTAAACGCCGT 686
|.||....|.|||.||..|||||||.||||| ..||| |||.||||...|
BL01646___ybc 638 GATCATCGGCCGGCCAAAGGCTTGCCGAGCA-CCCGGATGTGAACGGAAT 686
BSNT_00439___ 687 TACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGG--GCAAGCCGC 734
||||||.||.||.||.||||||...|||||||||||||| |.|.|.||.
BL01646___ybc 687 TACGTTCACAGGATCGAATCAAACAGGAAAAATCATCGGCCGGACGGCGT 736
BSNT_00439___ 735 TTTAGCGAGGGGAGCCAAGTACCAGCTTGAGATGGGCGGCAAAAACCCTG 784
||.|..||||| ||.||||||||||||||||||||||||||||||||.|
BL01646___ybc 737 TTGAAAGAGGG--GCGAAGTACCAGCTTGAGATGGGCGGCAAAAACCCGG 784
BSNT_00439___ 785 TCATCGTAGCTGATGACGCTGACCTTGAAGCTGCGGCCGAAGCTGTCATA 834
|.||||||||.||||||||.||||||||...|||||..|||||.|||||.
BL01646___ybc 785 TGATCGTAGCGGATGACGCCGACCTTGATATTGCGGTTGAAGCGGTCATC 834
BSNT_00439___ 835 ACGGGGGCCTTCCGTTCAACCGGCCAGAAATGCACCGCGACAAGCCGTGT 884
|..||.||.|||.|.||.||.|||||.||.||.||.|||||||||||.||
BL01646___ybc 835 AGCGGAGCGTTCAGGTCGACAGGCCAAAAGTGTACAGCGACAAGCCGCGT 884
BSNT_00439___ 885 CATTGTAC--AAA--GCGAAATTTATGAGCGCTTTAAAGAAAAACTGCTC 930
|||.|| | ||| |.| |||||||.||.|||||||||||.|||||.
BL01646___ybc 885 CATCGT-CTTAAATGGTG---TTTATGACCGTTTTAAAGAAAAGCTGCTT 930
BSNT_00439___ 931 CAGCGCACAAAAGATATTACAATCGGAGACAGCTTAAAAGAGGATGTCTG 980
||.|..||||||||.|||||||||||.||||||||||||||.||||||||
BL01646___ybc 931 CAACAGACAAAAGAGATTACAATCGGCGACAGCTTAAAAGAAGATGTCTG 980
BSNT_00439___ 981 GATGGGACCGATTGCCAGCAAGAATCAGCTTGATAACTGCCTGTCATACA 1030
||||||.||||||||.|.|||..|.||||||||.|||||||||||.||.|
BL01646___ybc 981 GATGGGGCCGATTGCGAACAAACAGCAGCTTGACAACTGCCTGTCCTATA 1030
BSNT_00439___ 1031 TTGAGAAAGGCAAACAGGAGGGGGCTTCCCT--TTTAATAGGAGGAGAAA 1078
|||..|||||.||.||.||.||.||...||| ||| |.||.||.||.|
BL01646___ybc 1031 TTGCAAAAGGAAAGCAAGAAGGCGCGGACCTCATTT--TCGGCGGTGAGA 1078
BSNT_00439___ 1079 AGCTGG-AGAACGGAAAGTATCAAAACGGCTATTATGTTCA-GCCTGCCA 1126
.||||| || |.|||||.||..|||||||||||||| .||| |||.||||
BL01646___ybc 1079 GGCTGGCAG-ATGGAAAATACGAAAACGGCTATTAT-ATCAGGCCGGCCA 1126
BSNT_00439___ 1127 TCTTTGACAATGTGACATCTGAGATGACAATTGCCCAGGAGGAAATTTTT 1176
|.||||||||.||.||.||.|..|||||.||||||||.||.||||||||.
BL01646___ybc 1127 TTTTTGACAACGTCACTTCCGGCATGACGATTGCCCAAGAAGAAATTTTC 1176
BSNT_00439___ 1177 GGTCCGGTGATCGCCTTGATCAAGGTGG----ACTCGATGGAAGAGGCGC 1222
||.|||||.|||||.||.|||||||.|| |||.|| |||| |||.
BL01646___ybc 1177 GGCCCGGTCATCGCTTTAATCAAGGCGGATACACTTGA-GGAA---GCGT 1222
BSNT_00439___ 1223 TGAACATCGCCAATGATGTGAAGTTCGGATTAAGTGCATCCATCTTCACG 1272
||.|.|..||.|||||.||.||.||.||..|.||.||.|||||.||.|||
BL01646___ybc 1223 TGGAGACGGCAAATGACGTCAAATTTGGCCTGAGCGCCTCCATTTTTACG 1272
BSNT_00439___ 1273 GAAAACATCGGCCGAATGCTTTCTTTCATTGATGAAATCGATGCCGGGCT 1322
.|||||||..|.||.|||||.||.||||..|||||||||||.||.|||||
BL01646___ybc 1273 CAAAACATTAGGCGGATGCTGTCATTCACAGATGAAATCGAAGCGGGGCT 1322
BSNT_00439___ 1323 GGTTCGGATCAATGCAGAAAGCGCAGGTGTTGAGCTGCAGGCGCCTTTTG 1372
..||||..||||.||.||||||||.|||||.||.|||||||||||.||.|
BL01646___ybc 1323 CATTCGCGTCAACGCCGAAAGCGCCGGTGTCGAACTGCAGGCGCCATTCG 1372
BSNT_00439___ 1373 GCGGCATGAAGCAGTCGAGCTCCCACTCCCGAGAACAGGGTGAGGCAGCG 1422
|.|||.|.||.||.||||||||.||.||.||.||||||||.||||||||.
BL01646___ybc 1373 GAGGCGTTAAACAATCGAGCTCGCATTCACGGGAACAGGGGGAGGCAGCC 1422
BSNT_00439___ 1423 AAGGACTTTTTCACAGCGATCAAAACCGTTTTTGTGAAGCCGTAA 1467
||.||.|||||.|||||..|.||||||||.|||||.||.||||||
BL01646___ybc 1423 AAAGAATTTTTTACAGCCGTGAAAACCGTATTTGTCAAACCGTAA 1467
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