Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00436 and BL01645
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_00436___ycbC.1.5803.seq
# -bsequence dna-align/BL01645___kdgD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00436___ycbC-BL01645___kdgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00436___ycbC-BL01645___kdgD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00436___ycbC
# 2: BL01645___kdgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity: 710/945 (75.1%)
# Similarity: 710/945 (75.1%)
# Gaps: 36/945 ( 3.8%)
# Score: 2546.0
#
#
#=======================================
BSNT_00436___ 1 ATGAGCCGTATCA-----GAAAAGCACCCGCTGGAATTTTAGGTTTTCCG 45
||||| ||| |.||.||.||.|..||.||.||.|||||||||
BL01645___kdg 1 ATGAG-----TCAATTACGGAAGGCGCCGGAAGGCATATTGGGTTTTCCG 45
BSNT_00436___ 46 GTTGCTCCTTTTAACACACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCA 95
||.||.||.||.||||...||||||||||||||||||||||.||||...|
BL01645___kdg 46 GTGGCGCCCTTCAACAGGGAAGGAAAACTGGAGGAAGAAGCACTTTACGA 95
BSNT_00436___ 96 AAACATTGAGTTTTTGCTGAATG-AGGGCTTGGAAGCGATATTTATTGCT 144
||||||....|||||..||.||| ||||||| ||.|||.|.|||||.|||
BL01645___kdg 96 AAACATCCGCTTTTTATTGGATGAAGGGCTT-GAGGCGGTTTTTATCGCT 144
BSNT_00436___ 145 TGCGGGTCTGGTGAATTCCAATCTCTCAGC-CAGAAGGAATATGAGCAAA 193
|||||.||.||.||.||.|||||||||||| || ||||||||||||||||
BL01645___kdg 145 TGCGGCTCAGGAGAGTTTCAATCTCTCAGCACA-AAGGAATATGAGCAAA 193
BSNT_00436___ 194 TGGTGGAAGTCGCAGTCTCGGCAGCCGGA-GGAAAGGTGCCGGTTTACAC 242
||||.|||.||||.||.|||||.| |||| ||.||||||||.||||||||
BL01645___kdg 194 TGGTCGAAATCGCCGTTTCGGCTG-CGGACGGGAAGGTGCCTGTTTACAC 242
BSNT_00436___ 243 GGGGGTGGGCGGCAACCTCAGCACAGCGCTT--GATTGGGCGCAGCTGTC 290
.||.||||||||||||.|.||||| ||||| ||.|||||||.|.|.||
BL01645___kdg 243 AGGAGTGGGCGGCAACTTAAGCAC--CGCTTTGGAATGGGCGCGGATTTC 290
BSNT_00436___ 291 GGAGAAAAAAGGCGCCGACGGCTACTTGATCCTGCCTCCGTATTTGGTGC 340
.|||.|||||||.|||||||||||..||||.||.||.|||||.|||.|.|
BL01645___kdg 291 CGAGGAAAAAGGGGCCGACGGCTATCTGATTCTCCCGCCGTACTTGATAC 340
BSNT_00436___ 341 ATGGCGAACAGGAGGGGCTGTACCAGTATGCGAAAACGATTATTGAAAGC 390
|.||.||.|||||.||.||.||.||.||..|||||||.||.|||||||||
BL01645___kdg 341 ACGGAGAGCAGGAAGGCCTCTATCAATACACGAAAACAATCATTGAAAGC 390
BSNT_00436___ 391 ACTGACTTGAACGCGATTCTTTATCAGCGCGATAACGCCGTTCTCTCTGT 440
||.||.||.|||||.||..||||||||||.||.||.||.|||.|..|..|
BL01645___kdg 391 ACGGATTTAAACGCAATCATTTATCAGCGAGACAATGCGGTTTTGACGCT 440
BSNT_00436___ 441 TGAACAGATCAAACGTCTGACCGAATGT-GAACAGCTTGTCGGTGTCAAA 489
|||||||||..|.||.||||||| ||.| ||.|||||||||||..|.|||
BL01645___kdg 441 TGAACAGATTCAGCGGCTGACCG-ATCTCGAGCAGCTTGTCGGACTTAAA 489
BSNT_00436___ 490 GACGGGGTAGGAAATATGGATTTGAATATCAACCTCGTC-TATACGATCG 538
|||||..||||..||||||..||||||||| |..|.||| ||||||||.|
BL01645___kdg 490 GACGGCATAGGGGATATGGCGTTGAATATC-AGTTTGTCATATACGATAG 538
BSNT_00436___ 539 GCGACCGCTTAGGATGGCTCAACGGAATGCCGATGGCTGAAGTGACGATG 588
|.|||.|..|.||.|||||||||||||||||||||||||||||.||||||
BL01645___kdg 539 GTGACAGGCTGGGCTGGCTCAACGGAATGCCGATGGCTGAAGTCACGATG 588
BSNT_00436___ 589 CCGGCTTAT-CTGCCGATCGGGTTCCAC-TCTTACTCTTCAGCGATTTCA 636
|||||.||| || |||||.||.|| .|| ||.||.|||||.|||||.||.
BL01645___kdg 589 CCGGCCTATGCT-CCGATTGGCTT-TACATCATATTCTTCGGCGATATCC 636
BSNT_00436___ 637 AATTATATCCCGCATATTTCGCGAATGTTCTATGATGCATTGAAAAATGG 686
||||||||.||.||||||||..|||||||.||.||.|||||...|||.||
BL01645___kdg 637 AATTATATTCCCCATATTTCCAGAATGTTTTACGAGGCATTATTAAACGG 686
BSNT_00436___ 687 AAATGACGAGCTTGTGAAGGAACTCTATCGGCATGTGATTCTGCCGATCA 736
.||||||..||||||.||.||..|.|||..|||.||.||..|.|||||||
BL01645___kdg 687 CAATGACCGGCTTGTCAAAGAGATTTATGAGCAAGTCATCATACCGATCA 736
BSNT_00436___ 737 ACGACATTCGCAAACAACGAAAAGGCTACGCCGTATCCTTAATTAAAGCC 786
||||.||.|||||||..||.||||||||.|||||.|||||.||.||||||
BL01645___kdg 737 ACGAGATCCGCAAACTTCGGAAAGGCTATGCCGTGTCCTTGATCAAAGCC 786
BSNT_00436___ 787 GGTATGGAAATCATGGGTTTGAATGTAAGGAATACAGCCAGACCGCCTGT 836
||.||||||||||||||..|..||||.|..||.||.||.||||||||..|
BL01645___kdg 787 GGCATGGAAATCATGGGGCTTCATGTGAAAAACACGGCGAGACCGCCGAT 836
BSNT_00436___ 837 CGGCCCGGTTGAAAAAGATCATTATCAGCAATTGGAAGCAATTTTGAAGC 886
||..|||||.||||||||.||||..|.|||..|.|||...|||.||||..
BL01645___kdg 837 CGTTCCGGTGGAAAAAGAACATTGCCGGCAGCTCGAAAACATTCTGAAAA 886
BSNT_00436___ 887 AGGCGGCTGAT----CGTTTTCCGAAAAAAGCCGCGACGGTTTGA 927
|.|| ||| ||||.||||||||...||||..|..|.|.|
BL01645___kdg 887 ACGC----GATGGCGCGTTATCCGAAAACGACCGCTGCCCTATAA 927
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