Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00436 and BL01645

See Amino acid alignment / Visit BSNT_00436 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence dna-align/BSNT_00436___ycbC.1.5803.seq
#    -bsequence dna-align/BL01645___kdgD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00436___ycbC-BL01645___kdgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00436___ycbC-BL01645___kdgD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00436___ycbC
# 2: BL01645___kdgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity:     710/945 (75.1%)
# Similarity:   710/945 (75.1%)
# Gaps:          36/945 ( 3.8%)
# Score: 2546.0
# 
#
#=======================================

BSNT_00436___      1 ATGAGCCGTATCA-----GAAAAGCACCCGCTGGAATTTTAGGTTTTCCG     45
                     |||||     |||     |.||.||.||.|..||.||.||.|||||||||
BL01645___kdg      1 ATGAG-----TCAATTACGGAAGGCGCCGGAAGGCATATTGGGTTTTCCG     45

BSNT_00436___     46 GTTGCTCCTTTTAACACACAAGGAAAACTGGAGGAAGAAGCTCTTTTTCA     95
                     ||.||.||.||.||||...||||||||||||||||||||||.||||...|
BL01645___kdg     46 GTGGCGCCCTTCAACAGGGAAGGAAAACTGGAGGAAGAAGCACTTTACGA     95

BSNT_00436___     96 AAACATTGAGTTTTTGCTGAATG-AGGGCTTGGAAGCGATATTTATTGCT    144
                     ||||||....|||||..||.||| ||||||| ||.|||.|.|||||.|||
BL01645___kdg     96 AAACATCCGCTTTTTATTGGATGAAGGGCTT-GAGGCGGTTTTTATCGCT    144

BSNT_00436___    145 TGCGGGTCTGGTGAATTCCAATCTCTCAGC-CAGAAGGAATATGAGCAAA    193
                     |||||.||.||.||.||.|||||||||||| || ||||||||||||||||
BL01645___kdg    145 TGCGGCTCAGGAGAGTTTCAATCTCTCAGCACA-AAGGAATATGAGCAAA    193

BSNT_00436___    194 TGGTGGAAGTCGCAGTCTCGGCAGCCGGA-GGAAAGGTGCCGGTTTACAC    242
                     ||||.|||.||||.||.|||||.| |||| ||.||||||||.||||||||
BL01645___kdg    194 TGGTCGAAATCGCCGTTTCGGCTG-CGGACGGGAAGGTGCCTGTTTACAC    242

BSNT_00436___    243 GGGGGTGGGCGGCAACCTCAGCACAGCGCTT--GATTGGGCGCAGCTGTC    290
                     .||.||||||||||||.|.|||||  |||||  ||.|||||||.|.|.||
BL01645___kdg    243 AGGAGTGGGCGGCAACTTAAGCAC--CGCTTTGGAATGGGCGCGGATTTC    290

BSNT_00436___    291 GGAGAAAAAAGGCGCCGACGGCTACTTGATCCTGCCTCCGTATTTGGTGC    340
                     .|||.|||||||.|||||||||||..||||.||.||.|||||.|||.|.|
BL01645___kdg    291 CGAGGAAAAAGGGGCCGACGGCTATCTGATTCTCCCGCCGTACTTGATAC    340

BSNT_00436___    341 ATGGCGAACAGGAGGGGCTGTACCAGTATGCGAAAACGATTATTGAAAGC    390
                     |.||.||.|||||.||.||.||.||.||..|||||||.||.|||||||||
BL01645___kdg    341 ACGGAGAGCAGGAAGGCCTCTATCAATACACGAAAACAATCATTGAAAGC    390

BSNT_00436___    391 ACTGACTTGAACGCGATTCTTTATCAGCGCGATAACGCCGTTCTCTCTGT    440
                     ||.||.||.|||||.||..||||||||||.||.||.||.|||.|..|..|
BL01645___kdg    391 ACGGATTTAAACGCAATCATTTATCAGCGAGACAATGCGGTTTTGACGCT    440

BSNT_00436___    441 TGAACAGATCAAACGTCTGACCGAATGT-GAACAGCTTGTCGGTGTCAAA    489
                     |||||||||..|.||.||||||| ||.| ||.|||||||||||..|.|||
BL01645___kdg    441 TGAACAGATTCAGCGGCTGACCG-ATCTCGAGCAGCTTGTCGGACTTAAA    489

BSNT_00436___    490 GACGGGGTAGGAAATATGGATTTGAATATCAACCTCGTC-TATACGATCG    538
                     |||||..||||..||||||..||||||||| |..|.||| ||||||||.|
BL01645___kdg    490 GACGGCATAGGGGATATGGCGTTGAATATC-AGTTTGTCATATACGATAG    538

BSNT_00436___    539 GCGACCGCTTAGGATGGCTCAACGGAATGCCGATGGCTGAAGTGACGATG    588
                     |.|||.|..|.||.|||||||||||||||||||||||||||||.||||||
BL01645___kdg    539 GTGACAGGCTGGGCTGGCTCAACGGAATGCCGATGGCTGAAGTCACGATG    588

BSNT_00436___    589 CCGGCTTAT-CTGCCGATCGGGTTCCAC-TCTTACTCTTCAGCGATTTCA    636
                     |||||.||| || |||||.||.|| .|| ||.||.|||||.|||||.||.
BL01645___kdg    589 CCGGCCTATGCT-CCGATTGGCTT-TACATCATATTCTTCGGCGATATCC    636

BSNT_00436___    637 AATTATATCCCGCATATTTCGCGAATGTTCTATGATGCATTGAAAAATGG    686
                     ||||||||.||.||||||||..|||||||.||.||.|||||...|||.||
BL01645___kdg    637 AATTATATTCCCCATATTTCCAGAATGTTTTACGAGGCATTATTAAACGG    686

BSNT_00436___    687 AAATGACGAGCTTGTGAAGGAACTCTATCGGCATGTGATTCTGCCGATCA    736
                     .||||||..||||||.||.||..|.|||..|||.||.||..|.|||||||
BL01645___kdg    687 CAATGACCGGCTTGTCAAAGAGATTTATGAGCAAGTCATCATACCGATCA    736

BSNT_00436___    737 ACGACATTCGCAAACAACGAAAAGGCTACGCCGTATCCTTAATTAAAGCC    786
                     ||||.||.|||||||..||.||||||||.|||||.|||||.||.||||||
BL01645___kdg    737 ACGAGATCCGCAAACTTCGGAAAGGCTATGCCGTGTCCTTGATCAAAGCC    786

BSNT_00436___    787 GGTATGGAAATCATGGGTTTGAATGTAAGGAATACAGCCAGACCGCCTGT    836
                     ||.||||||||||||||..|..||||.|..||.||.||.||||||||..|
BL01645___kdg    787 GGCATGGAAATCATGGGGCTTCATGTGAAAAACACGGCGAGACCGCCGAT    836

BSNT_00436___    837 CGGCCCGGTTGAAAAAGATCATTATCAGCAATTGGAAGCAATTTTGAAGC    886
                     ||..|||||.||||||||.||||..|.|||..|.|||...|||.||||..
BL01645___kdg    837 CGTTCCGGTGGAAAAAGAACATTGCCGGCAGCTCGAAAACATTCTGAAAA    886

BSNT_00436___    887 AGGCGGCTGAT----CGTTTTCCGAAAAAAGCCGCGACGGTTTGA    927
                     |.||    |||    ||||.||||||||...||||..|..|.|.|
BL01645___kdg    887 ACGC----GATGGCGCGTTATCCGAAAACGACCGCTGCCCTATAA    927


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