Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00434 and BL01641
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_00434___ycbB.1.5803.seq
# -bsequence dna-align/BL01641___glnL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00434___ycbB-BL01641___glnL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00434___ycbB-BL01641___glnL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00434___ycbB
# 2: BL01641___glnL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity: 668/1003 (66.6%)
# Similarity: 668/1003 (66.6%)
# Gaps: 125/1003 (12.5%)
# Score: 2096.5
#
#
#=======================================
BSNT_00434___ 1 ATGCGTTTTTTTATTGCAGATGATGACCGTGCAGTGCGGTCAATTTTAAG 50
.|||||||||||||||||||||||||||||||.|||||.||.|||||||.
BL01641___gln 1 GTGCGTTTTTTTATTGCAGATGATGACCGTGCTGTGCGATCGATTTTAAA 50
BSNT_00434___ 51 GCAGATCATTGAGGACGAAGATCTCGGGGAAGCTGTTGGTGAAGCTGACG 100
.||.||||||||.|||||||||.|.||.||||..|..||.|||||.||.|
BL01641___gln 51 ACAAATCATTGAAGACGAAGATTTGGGTGAAGTGGCCGGAGAAGCGGAAG 100
BSNT_00434___ 101 ACGGAAGCCAAGTGGAAGGGCATATGCTGCAATTT-AAGCAGATTGATAT 149
||||..||.|..|||||||.||..|.||| ||||| .||||.||||||||
BL01641___gln 101 ACGGCTGCGATTTGGAAGGACACGTCCTG-AATTTGCAGCAAATTGATAT 149
BSNT_00434___ 150 TTTATTAATCGATCTGTTAATGC----CCGGAAGAGACGGCATTGAGACG 195
||||||..|||||||.||||||| || |.|||||.|||||.|||
BL01641___gln 150 TTTATTTGTCGATCTTTTAATGCCGCTCC----GCGACGGAATTGAAACG 195
BSNT_00434___ 196 ATTCGTCAGATCCAGAATACG-----TACTCCGGCAAAATCATAATGATC 240
.|||||||..|.| ||| |.|||.||.||.|||||.||||||
BL01641___gln 196 GTTCGTCATTTGC-----ACGGCGTTTTCTCAGGGAAGATCATCATGATC 240
BSNT_00434___ 241 TCTCAAGTGGAGGCGAAGGAAATGGTCGGGGAAGCGTACTCGCTCGGCAT 290
||.||.|||||..|.|||||||||.||||.|||||.||.||.||.||.||
BL01641___gln 241 TCCCAGGTGGAATCAAAGGAAATGATCGGTGAAGCCTATTCCCTGGGGAT 290
BSNT_00434___ 291 CGAATATTTTATCCATAAGCCGATTAACCGCATTGAAAT------TGTCA 334
||||||||.|||.|||||.|||||||||||||||||||| |||||
BL01641___gln 291 CGAATATTATATACATAAACCGATTAACCGCATTGAAATCTTGAATGTCA 340
BSNT_00434___ 335 CGGTTCTCCAAAAGGTGAAGGAGCGGATCGAGCTTGAACACTCGATTGGA 384
|.|||||.||.||||||||.||||||||.||||..|||||....
BL01641___gln 341 ------TTCAAAAAGTCAAGGAGCGCATCGAGCTGGAACGGTCGATCCAT 384
BSNT_00434___ 385 GCCATTCAGCATTCTCTAAGCCGGCTTGTCA--ATCGGACTGAACGGAAA 432
|.|||.||...|||.||.|.|||||||||.| .|||| |||
BL01641___gln 385 GACATACAATCTTCGCTGAACCGGCTTGTGAGCCTCGG------CGG--- 425
BSNT_00434___ 433 GCGCGTCCCCAGCAGAAGAGTGACAGCGGTTT------AAAAG-AGGCAG 475
|..|..|||.| ||.|| ||| ||||| |..|||
BL01641___gln 426 --------CGGGGGGAAAA---ACGGC--TTTAGGGAAAAAAGCATTCAG 462
BSNT_00434___ 476 GAA-------CATTCCTGTTGTCCGAGCTGGGCATGAT--GGGAGAAGGC 516
||| .|||.||..||||.||.||.||.||..| |||||| ||
BL01641___gln 463 GAAACGGGCGAATTTCTCCTGTCTGAACTCGGAATCGTCGGGGAGA--GC 510
BSNT_00434___ 517 GGCGCACATGATCTCATGGCGGTCCTGCAGTATTTAGCAGAACACGAGCA 566
||..|.||.|||.|.||.||..||||.||||||||....||..|.||.||
BL01641___gln 511 GGATCCCAGGATTTAATCGCCATCCTTCAGTATTTGTTTGATGATGAACA 560
BSNT_00434___ 567 ATCCGAGCCGCACGAAAAACAAAGCCCTT-----CGCTAAAACA-AATAT 610
|| ||.||..|.|...||||..||| ||||.||||| |.|.|
BL01641___gln 561 ----GA-CCTCATTATATGAAAAGGACTTTCCGCCGCTCAAACAGATTTT 605
BSNT_00434___ 611 TCACCCAAG-TAGCGGTACGGAAGCTGGGGACAGG-GGCCTCA----CAG 654
|||.| || |.||.||.|..||||| .||||.|| .||.||| |||
BL01641___gln 606 TCATC--AGATTGCCGTGCAAAAGCT-CGGACCGGCTGCTTCACCCGCAG 652
BSNT_00434___ 655 ACGGAAGTCAATCGCGAAATGAAAGCCTCGGAGCAGCGTATCCGCAGAGC 704
| || ||||..|.||..|.|||||.||.||||||||.||.||..|.||
BL01641___gln 653 A--GA--TCAACAGGGAGGTTAAAGCGTCTGAGCAGCGGATACGGCGGGC 698
BSNT_00434___ 705 GATTATTCATTCGCTGCACCATTTTGCTTCATTGGGCACAACTGATTTTT 754
|.|.|..||||||||..||||||||||.|||.|.||...|||.||.||||
BL01641___gln 699 GGTCAGCCATTCGCTAAACCATTTTGCATCACTCGGTTTAACAGACTTTT 748
BSNT_00434___ 755 CGAATCCAAAATTTGAAACCTATGCATCGAAATTCTTTGATTTTCCGGTT 804
|.|||||....|||||||.||||||.||....||.|||||.|||.|.||.
BL01641___gln 749 CAAATCCGCGGTTTGAAAGCTATGCGTCCCGGTTTTTTGACTTTACCGTC 798
BSNT_00434___ 805 GTCAGCCAGAAAATAAAAGAACTCCAATCCAAGGATGCAAAACCC----- 849
.|||||.|.|||||.||||||||.|| |.||.||.|
BL01641___gln 799 ATCAGCAAAAAAATGAAAGAACTGCA----------GAAAGACTCTGCCG 838
BSNT_00434___ 850 ----CTTGCACCT--GCTAGAATAAATATGAAAAAATTCATCCACGTGTT 893
||||| ||| ||..|..|.||.|.||||||||||||.||.||.||
BL01641___gln 839 CCGTCTTGC-CCTCCGCCCGCGTCAACACGAAAAAATTCATTCAGGTTTT 887
BSNT_00434___ 894 TTTTTTGGAAGCAAAGCTTTTGCATGAGA-CGATGAAACAAAGAAGGATA 942
.|||||||||||.||||..|||..|||.| ||.||.|| |||| |||.||
BL01641___gln 888 CTTTTTGGAAGCCAAGCGGTTGAGTGAAAGCGCTGGAA-AAAG-AGGTTA 935
BSNT_00434___ 943 TAA 945
.
BL01641___gln 936 A-- 936
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