Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00434 and BL01641

See Amino acid alignment / Visit BSNT_00434 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence dna-align/BSNT_00434___ycbB.1.5803.seq
#    -bsequence dna-align/BL01641___glnL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00434___ycbB-BL01641___glnL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00434___ycbB-BL01641___glnL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00434___ycbB
# 2: BL01641___glnL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity:     668/1003 (66.6%)
# Similarity:   668/1003 (66.6%)
# Gaps:         125/1003 (12.5%)
# Score: 2096.5
# 
#
#=======================================

BSNT_00434___      1 ATGCGTTTTTTTATTGCAGATGATGACCGTGCAGTGCGGTCAATTTTAAG     50
                     .|||||||||||||||||||||||||||||||.|||||.||.|||||||.
BL01641___gln      1 GTGCGTTTTTTTATTGCAGATGATGACCGTGCTGTGCGATCGATTTTAAA     50

BSNT_00434___     51 GCAGATCATTGAGGACGAAGATCTCGGGGAAGCTGTTGGTGAAGCTGACG    100
                     .||.||||||||.|||||||||.|.||.||||..|..||.|||||.||.|
BL01641___gln     51 ACAAATCATTGAAGACGAAGATTTGGGTGAAGTGGCCGGAGAAGCGGAAG    100

BSNT_00434___    101 ACGGAAGCCAAGTGGAAGGGCATATGCTGCAATTT-AAGCAGATTGATAT    149
                     ||||..||.|..|||||||.||..|.||| ||||| .||||.||||||||
BL01641___gln    101 ACGGCTGCGATTTGGAAGGACACGTCCTG-AATTTGCAGCAAATTGATAT    149

BSNT_00434___    150 TTTATTAATCGATCTGTTAATGC----CCGGAAGAGACGGCATTGAGACG    195
                     ||||||..|||||||.|||||||    ||    |.|||||.|||||.|||
BL01641___gln    150 TTTATTTGTCGATCTTTTAATGCCGCTCC----GCGACGGAATTGAAACG    195

BSNT_00434___    196 ATTCGTCAGATCCAGAATACG-----TACTCCGGCAAAATCATAATGATC    240
                     .|||||||..|.|     |||     |.|||.||.||.|||||.||||||
BL01641___gln    196 GTTCGTCATTTGC-----ACGGCGTTTTCTCAGGGAAGATCATCATGATC    240

BSNT_00434___    241 TCTCAAGTGGAGGCGAAGGAAATGGTCGGGGAAGCGTACTCGCTCGGCAT    290
                     ||.||.|||||..|.|||||||||.||||.|||||.||.||.||.||.||
BL01641___gln    241 TCCCAGGTGGAATCAAAGGAAATGATCGGTGAAGCCTATTCCCTGGGGAT    290

BSNT_00434___    291 CGAATATTTTATCCATAAGCCGATTAACCGCATTGAAAT------TGTCA    334
                     ||||||||.|||.|||||.||||||||||||||||||||      |||||
BL01641___gln    291 CGAATATTATATACATAAACCGATTAACCGCATTGAAATCTTGAATGTCA    340

BSNT_00434___    335 CGGTTCTCCAAAAGGTGAAGGAGCGGATCGAGCTTGAACACTCGATTGGA    384
                           |.|||||.||.||||||||.||||||||.||||..|||||....
BL01641___gln    341 ------TTCAAAAAGTCAAGGAGCGCATCGAGCTGGAACGGTCGATCCAT    384

BSNT_00434___    385 GCCATTCAGCATTCTCTAAGCCGGCTTGTCA--ATCGGACTGAACGGAAA    432
                     |.|||.||...|||.||.|.|||||||||.|  .||||      |||   
BL01641___gln    385 GACATACAATCTTCGCTGAACCGGCTTGTGAGCCTCGG------CGG---    425

BSNT_00434___    433 GCGCGTCCCCAGCAGAAGAGTGACAGCGGTTT------AAAAG-AGGCAG    475
                             |..|..|||.|   ||.||  |||      ||||| |..|||
BL01641___gln    426 --------CGGGGGGAAAA---ACGGC--TTTAGGGAAAAAAGCATTCAG    462

BSNT_00434___    476 GAA-------CATTCCTGTTGTCCGAGCTGGGCATGAT--GGGAGAAGGC    516
                     |||       .|||.||..||||.||.||.||.||..|  ||||||  ||
BL01641___gln    463 GAAACGGGCGAATTTCTCCTGTCTGAACTCGGAATCGTCGGGGAGA--GC    510

BSNT_00434___    517 GGCGCACATGATCTCATGGCGGTCCTGCAGTATTTAGCAGAACACGAGCA    566
                     ||..|.||.|||.|.||.||..||||.||||||||....||..|.||.||
BL01641___gln    511 GGATCCCAGGATTTAATCGCCATCCTTCAGTATTTGTTTGATGATGAACA    560

BSNT_00434___    567 ATCCGAGCCGCACGAAAAACAAAGCCCTT-----CGCTAAAACA-AATAT    610
                         || ||.||..|.|...||||..|||     ||||.||||| |.|.|
BL01641___gln    561 ----GA-CCTCATTATATGAAAAGGACTTTCCGCCGCTCAAACAGATTTT    605

BSNT_00434___    611 TCACCCAAG-TAGCGGTACGGAAGCTGGGGACAGG-GGCCTCA----CAG    654
                     |||.|  || |.||.||.|..||||| .||||.|| .||.|||    |||
BL01641___gln    606 TCATC--AGATTGCCGTGCAAAAGCT-CGGACCGGCTGCTTCACCCGCAG    652

BSNT_00434___    655 ACGGAAGTCAATCGCGAAATGAAAGCCTCGGAGCAGCGTATCCGCAGAGC    704
                     |  ||  ||||..|.||..|.|||||.||.||||||||.||.||..|.||
BL01641___gln    653 A--GA--TCAACAGGGAGGTTAAAGCGTCTGAGCAGCGGATACGGCGGGC    698

BSNT_00434___    705 GATTATTCATTCGCTGCACCATTTTGCTTCATTGGGCACAACTGATTTTT    754
                     |.|.|..||||||||..||||||||||.|||.|.||...|||.||.||||
BL01641___gln    699 GGTCAGCCATTCGCTAAACCATTTTGCATCACTCGGTTTAACAGACTTTT    748

BSNT_00434___    755 CGAATCCAAAATTTGAAACCTATGCATCGAAATTCTTTGATTTTCCGGTT    804
                     |.|||||....|||||||.||||||.||....||.|||||.|||.|.||.
BL01641___gln    749 CAAATCCGCGGTTTGAAAGCTATGCGTCCCGGTTTTTTGACTTTACCGTC    798

BSNT_00434___    805 GTCAGCCAGAAAATAAAAGAACTCCAATCCAAGGATGCAAAACCC-----    849
                     .|||||.|.|||||.||||||||.||          |.||.||.|     
BL01641___gln    799 ATCAGCAAAAAAATGAAAGAACTGCA----------GAAAGACTCTGCCG    838

BSNT_00434___    850 ----CTTGCACCT--GCTAGAATAAATATGAAAAAATTCATCCACGTGTT    893
                         ||||| |||  ||..|..|.||.|.||||||||||||.||.||.||
BL01641___gln    839 CCGTCTTGC-CCTCCGCCCGCGTCAACACGAAAAAATTCATTCAGGTTTT    887

BSNT_00434___    894 TTTTTTGGAAGCAAAGCTTTTGCATGAGA-CGATGAAACAAAGAAGGATA    942
                     .|||||||||||.||||..|||..|||.| ||.||.|| |||| |||.||
BL01641___gln    888 CTTTTTGGAAGCCAAGCGGTTGAGTGAAAGCGCTGGAA-AAAG-AGGTTA    935

BSNT_00434___    943 TAA    945
                     .  
BL01641___gln    936 A--    936


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