Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02422 and BL01614

See Amino acid alignment / Visit BSNT_02422 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_02422___ykrA.1.5803.seq
#    -bsequence dna-align/BL01614___ykrA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02422___ykrA-BL01614___ykrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02422___ykrA-BL01614___ykrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02422___ykrA
# 2: BL01614___ykrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     545/827 (65.9%)
# Similarity:   545/827 (65.9%)
# Gaps:         103/827 (12.5%)
# Score: 1598.0
# 
#
#=======================================

BSNT_02422___      1 ATGGATTCTAAATTAATCTTTTTTGATATTGACGGCACAATATATGATCA     50
                     ||||||...||..|.||.||.||||||||||||||.||.||.||||||||
BL01614___ykr      1 ATGGATAAAAAGCTGATTTTCTTTGATATTGACGGAACGATTTATGATCA     50

BSNT_02422___     51 TGATAA--GAATAT------ACCGGAAAGTACGAGAAAAACCGTGGCGGA     92
                     ..||||  |.|| |      ||||.|||       |.|..||||..|.||
BL01614___ykr     51 CAATAAACGCAT-TCCCGCCACCGCAAA-------ACAGGCCGTCTCCGA     92

BSNT_02422___     93 GCTG-CAGCGCCAAGGGCATCATGTGTTTATTGC--CAGCGGCCGGTCTC    139
                     ..|| .|||| ||.||.||||||||.||.||.||  ||  |||||..|.|
BL01614___ykr     93 TTTGAAAGCG-CACGGCCATCATGTTTTCATCGCGTCA--GGCCGTGCGC    139

BSNT_02422___    140 CATTTTTGGTTAAGCCGATTTTGGAGGAGCTGGGCATCCACTCATTTATT    189
                     |.|||.||||.|.|||..||.|.||.||.|||||||||.|.||.|||.|.
BL01614___ykr    140 CGTTTATGGTCAGGCCTGTTCTTGAAGAACTGGGCATCGATTCTTTTGTC    189

BSNT_02422___    190 TCCTACAATGGACAGTTTGTTGTCTTTGAAAATCAAGTGATTTATAAAAA    239
                     ||.||.||.|||||.|.|||.||.||||||....|.||.|||||||||||
BL01614___ykr    190 TCTTATAACGGACAATATGTCGTTTTTGAAGGAGAGGTCATTTATAAAAA    239

BSNT_02422___    240 TCCGC--TGCCTGAAAATGCAATC-----AGGCGATTATTAAAGCAGGCG    282
                     ||| |  |||| ||    |||.||     |.|||.|..|| ..|||..||
BL01614___ykr    240 TCC-CATTGCC-GA----GCAGTCGTTAGAAGCGCTGCTT-GCGCATTCG    282

BSNT_02422___    283 GA----TGAAGGCAAGCATCCTGTTGTGTTTATGGCTGAGGACACGATGA    328
                     ||    || .|||   ||.||..|.||.||.||||..||.||...|||  
BL01614___ykr    283 GACAGCTG-CGGC---CACCCCCTCGTCTTCATGGGGGAAGAGGGGAT--    326

BSNT_02422___    329 AAGCGACTGT-----TGCGGATCACCCCCAT--GTTC-TCG----AGGGA    366
                       ||| ||.|     |||      |.|||||  |||| |||    |||| 
BL01614___ykr    327 --GCG-CTCTACAACTGC------CGCCCATCCGTTCGTCGATGAAGGG-    366

BSNT_02422___    367 ATCGGCAGCCTTAAAA--CAGATTATCC------AGAGACCGAT--GACC    406
                     |||||||| |||||||  ||    ||||      ||||   |||  .|||
BL01614___ykr    367 ATCGGCAG-CTTAAAAGTCA----ATCCGCCGGAAGAG---GATCGTACC    408

BSNT_02422___    407 TTTTTTATGAAGGAAAAGAAATTTTTCAGCTTCTTTTATTTTG---TCAG    453
                     |..||||  |.||.|..||.|||||.|||.|.||.||.||.||   .||.
BL01614___ykr    409 TACTTTA--AGGGCAGGGACATTTTCCAGGTCCTCTTGTTCTGCACGCAA    456

BSNT_02422___    454 GATGAAGAAGAAAAAGC--TTATGCCGCTTTTCCTGAGTTTGATCTAGTT    501
                     ||.||.||||    |||  |...|||| .|||...|||||||||||.||.
BL01614___ykr    457 GACGAGGAAG----AGCGGTACAGCCG-GTTTAAAGAGTTTGATCTCGTC    501

BSNT_02422___    502 CGCTGGCATGAGCTATCGACTGATGTTCTGCC-GCACGGAGGTTCGAAGG    550
                     ||||||||.||||..||.||.|||||.||||| .|| ||.||.|||||.|
BL01614___ykr    502 CGCTGGCACGAGCGCTCCACAGATGTGCTGCCTTCA-GGCGGATCGAAAG    550

BSNT_02422___    551 CAGAAGGAATCAAAAAAGTGATTGAGCGTCTTCCGTTTGATATCGGCGAT    600
                     |.|||||||||||||||||.|||||....||||||||.||.|..|..|||
BL01614___ykr    551 CGGAAGGAATCAAAAAAGTCATTGAAAAACTTCCGTTCGACAGAGAGGAT    600

BSNT_02422___    601 ACATATGCTTTCGGCGACGGATTAAATGATCTGCAAATGATTGAATATGT    650
                     ||.|||||.|||||.|||||..|.||.||.|||||.|||||.||||.||.
BL01614___ykr    601 ACTTATGCGTTCGGGGACGGTCTGAACGACCTGCAGATGATCGAATTTGC    650

BSNT_02422___    651 AGGGACAGGCGTTGCTATGGGAAATGCTGTTCCCGAACTGAAAGAAATCG    700
                     .||.||.||.||.||.|||||.||.|||||.|||||.||||||.||||.|
BL01614___ykr    651 GGGAACCGGAGTAGCGATGGGCAACGCTGTGCCCGAGCTGAAAAAAATAG    700

BSNT_02422___    701 CGGACTTTGTAACAAAGCCGGTGGACGAGGATGGAATTGCATACGCTGCC    750
                     |.||||||.|.||||||||.||.||.||.||.||.|||..||||||.|..
BL01614___ykr    701 CCGACTTTATCACAAAGCCCGTCGATGAAGACGGCATTCAATACGCGGTG    750

BSNT_02422___    751 AAAGAATTGGGCCTTTTAAAATAA---    774
                     .|||...|.||.|||||.||||.|   
BL01614___ykr    751 GAAGCGCTCGGACTTTTGAAATCATAA    777


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02422 and BL01614

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
