Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02406 and BL01608
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_02406.1.5803.seq
# -bsequence dna-align/BL01608___ykpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02406-BL01608___ykpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02406-BL01608___ykpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02406
# 2: BL01608___ykpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1622
# Identity: 1129/1622 (69.6%)
# Similarity: 1129/1622 (69.6%)
# Gaps: 241/1622 (14.9%)
# Score: 4587.0
#
#
#=======================================
BSNT_02406 1 ATGATTGCTGTAAATAATGTAAGCTTGCGGTTTGCGGATCGCAAGTTATT 50
|||||.|||||..|.|||||.||||||||||||||.||.|..|||.|.||
BL01608___ykp 1 ATGATAGCTGTTCAAAATGTCAGCTTGCGGTTTGCAGACCAGAAGCTGTT 50
BSNT_02406 51 TGAAGATGTTAATATTAAATTTACCCCAGGCAACTGCTATGGGTTAATTG 100
|||||||||.||||||||.|||.|.||.||.||||||||.||.||.||.|
BL01608___ykp 51 TGAAGATGTAAATATTAAGTTTGCGCCCGGAAACTGCTACGGATTGATCG 100
BSNT_02406 101 GTGCAAACGGTGCCGGTAAATCAACGTTTCTAAAGGTGCTGTCAGGCGAA 150
|.||||||||.|||||.||.||.||.|||.||||..|..||||.||||||
BL01608___ykp 101 GAGCAAACGGCGCCGGAAAGTCCACTTTTTTAAAAATATTGTCTGGCGAA 150
BSNT_02406 151 ATCGAGCCTCAGACAGGCGACGTGCATATGAGTCCTGGCGAGCGTCTTGC 200
||.|||||||||||||||||.||.|||||||||||||||||.||||||||
BL01608___ykp 151 ATTGAGCCTCAGACAGGCGAAGTCCATATGAGTCCTGGCGAACGTCTTGC 200
BSNT_02406 201 CGTCTTGAAGCAGAACCATTTTGAGTACGAAGAGTATGAAGTGCTGAAAG 250
||||.|||||||||||||.||||||||.||||||.||||||||.||||||
BL01608___ykp 201 CGTCCTGAAGCAGAACCACTTTGAGTATGAAGAGCATGAAGTGTTGAAAG 250
BSNT_02406 251 TGGTCATTATGGGCCACAAACGCCTGTATGAAGTCATGCAGGAGAAAGAC 300
|.||.||.|||||.||.|.|||.||.|||||||||||||||||.||||||
BL01608___ykp 251 TCGTGATCATGGGACATAGACGACTTTATGAAGTCATGCAGGAAAAAGAC 300
BSNT_02406 301 GCTATTTACATGAAGCCTGATTTCTCAGATGAGGATGGGATTCGTGCTGC 350
||.|||||||||||.||||||||.||||||||.||.||.||.||.||.||
BL01608___ykp 301 GCGATTTACATGAAACCTGATTTTTCAGATGAAGACGGAATCCGCGCCGC 350
BSNT_02406 351 TGAGCTAGAAGGTGAATTCGCGGAACTGAACGGTTGGGAAGCGGAAAGTG 400
.|||||.|||||.||||||||.||.||||||||.||||||||.|||.|.|
BL01608___ykp 351 GGAGCTTGAAGGCGAATTCGCCGAGCTGAACGGCTGGGAAGCCGAAGGGG 400
BSNT_02406 401 AAGCTGCGATCCTGTTAAAAGGCCTTGGTATCTCAGAAGATCTGCACACA 450
||||.||||||.|.||||||||.||.||.||..|.|||||.||.||.||.
BL01608___ykp 401 AAGCCGCGATCTTATTAAAAGGACTCGGCATTCCTGAAGAACTTCATACG 450
BSNT_02406 451 AAAAAGATGGCAGACCTCGGCGGTTCGGAGAAGGTAAAAGTTC-TCTTGG 499
||.||.||||||||..|.|||||.||.||.|||||.||.||.| |||| |
BL01608___ykp 451 AAGAAAATGGCAGATTTGGGCGGCTCTGAAAAGGTGAAGGTCCTTCTT-G 499
BSNT_02406 500 CACAGGCATTATTCGGCAAGCCGGATGTTCTGCTGCTCGATGAGCCGACG 549
|||||||..|.|||||.||.||.||.||.||.||.||||||||||||||.
BL01608___ykp 500 CACAGGCCCTGTTCGGAAAACCCGACGTCCTTCTTCTCGATGAGCCGACC 549
BSNT_02406 550 AACCACTTGGACCTTCAGGCAATCCAGTGGCTTGAAGAGTTTCTGATTAA 599
|||||||||||..|||||||.|||||.|||||.|||||||||.|.||.||
BL01608___ykp 550 AACCACTTGGATATTCAGGCGATCCAATGGCTAGAAGAGTTTTTAATCAA 599
BSNT_02406 600 CTTTGAAAACACAGTTATTGTCGTATCCCATGACCGTCACTTCTTAAATA 649
.|||||.||.||.|||||.||||||||.||||||||.|||||.|||||||
BL01608___ykp 600 TTTTGAGAATACGGTTATCGTCGTATCGCATGACCGCCACTTTTTAAATA 649
BSNT_02406 650 AAGTATGTACGCACATTGCCGACCTTGATTTTAACAAAATTCAAATCTAT 699
|||||||||||||.|||||||||||.|||||||||||.||||||||.|||
BL01608___ykp 650 AAGTATGTACGCATATTGCCGACCTGGATTTTAACAAGATTCAAATTTAT 699
BSNT_02406 700 GTAGGAAACTATGATTTCTGGTACGAGTCAAGCCAGCTGGCG-TTAAAGC 748
||.||||||||||||||||||||.||.|||||||||||.||| ||||| .
BL01608___ykp 700 GTCGGAAACTATGATTTCTGGTATGAATCAAGCCAGCTTGCGCTTAAA-A 748
BSNT_02406 749 TTTCTCAAGAAGCGAACAAGAAAAAAGAAGAGCAGATTAAACAGCTTCAA 798
|..||||.|||||.||.|||||||||||.||||||||.||||||||.|||
BL01608___ykp 749 TGGCTCAGGAAGCCAATAAGAAAAAAGAGGAGCAGATCAAACAGCTCCAA 798
BSNT_02406 799 GAGTTTGTCGCTAGATTCAGCGCCAATGCGTCTAAATCTAAGCAGGCTAC 848
|||||.|||||.||||||||||||||.||.||.|||||.||||||||.||
BL01608___ykp 799 GAGTTCGTCGCCAGATTCAGCGCCAACGCCTCAAAATCGAAGCAGGCGAC 848
BSNT_02406 849 ATCAAGAAAGAAACTTCTCGAAAAAATCACGCTGGATGATATTAAACCGT 898
|||.|||||.|||||.||.||||||||.|||||.||.||||||||.||.|
BL01608___ykp 849 ATCGAGAAAAAAACTGCTTGAAAAAATTACGCTTGACGATATTAAGCCTT 898
BSNT_02406 899 CTTCCCGCCGCTATCCTTATGTTAACTTCACGCCGGAACGGGAAATCGGA 948
|.||.|||...|||||.|||||..|.|||.|.||.|||||.|||||.|||
BL01608___ykp 899 CATCTCGCAAGTATCCGTATGTACATTTCGCACCTGAACGCGAAATTGGA 948
BSNT_02406 949 AATGATGTTCTTCGCGTGGAAGGCTTAACAAAAACAATCGATGGCGTAAA 998
||.|||||.|||...||..|||.|.|..|.|||||.|||||.|||||.||
BL01608___ykp 949 AACGATGTGCTTGTTGTCAAAGACCTGTCGAAAACGATCGACGGCGTCAA 998
BSNT_02406 999 GGTGCTTGACAATGTCAGCTTTATTATGAATCGAGAAGATAAAATTGCTT 1048
||||||||||..||||||||||||.||||||..|||.||||||||.||.|
BL01608___ykp 999 GGTGCTTGACTCTGTCAGCTTTATGATGAATAAAGAGGATAAAATCGCCT 1048
BSNT_02406 1049 TCACTGGCCGAAATGAACTTGCTGTTACTACGCTGTTTAAAATCATTTCC 1098
|.||.|||||.||.||.||.||.|.|||.|||||.|||||||||.||.||
BL01608___ykp 1049 TTACAGGCCGGAACGAGCTAGCCGCTACAACGCTCTTTAAAATCCTTGCC 1098
BSNT_02406 1099 GGGGAAATGGAAGCTGACAGCGGAACGTTTAAATGGGGTGTTACCACATC 1148
|||||||||||..|||||||||||.|||||||||||||.||.||.|||||
BL01608___ykp 1099 GGGGAAATGGAGCCTGACAGCGGATCGTTTAAATGGGGCGTCACTACATC 1148
BSNT_02406 1149 TCAAGCGTATTTTCCAAAAGACAACAGCGAATATTTCGAAGGCAGTGATC 1198
.|||||||.|||.||.||||||||||||||.|||||.|||..|||.|||.
BL01608___ykp 1149 CCAAGCGTTTTTCCCGAAAGACAACAGCGAGTATTTTGAAAACAGCGATT 1198
BSNT_02406 1199 TGAACCTTGTAGACTGGCTTCGCCAATATTCTCCGCACGACCAAAGTGAG 1248
|.||||||||.||||||||.|||||||.|||.|||||.|||||||||||.
BL01608___ykp 1199 TAAACCTTGTCGACTGGCTCCGCCAATTTTCGCCGCATGACCAAAGTGAA 1248
BSNT_02406 1249 AGCTTTTTACGCGGTTTCTTA-GACGCATGCTGTTCTCTGGAGAAGAAGT 1297
|||||..|.|||||.||.||| |.||.|||||||||||.|||||||||||
BL01608___ykp 1249 AGCTTCCTGCGCGGATTTTTAGGCCGGATGCTGTTCTCCGGAGAAGAAGT 1298
BSNT_02406 1298 CCACAAAAAAGCAAATGTACTTTCCGGGGGAGAAAAGGTCCGCTGTATGC 1347
.|..||||||||||..||..|.||.|||||||||||.||||||||.||||
BL01608___ykp 1299 GCTGAAAAAAGCAAGCGTTTTGTCAGGGGGAGAAAAAGTCCGCTGCATGC 1348
BSNT_02406 1348 TGTCGAAAGCGATGCTTTCTGGCGCCAATATTTTAA-------------- 1383
||||||||..||||||.||.|||||||||.|..|.|
BL01608___ykp 1349 TGTCGAAAATGATGCTGTCCGGCGCCAATGTGCTGATGCTTGATGAGCCG 1398
BSNT_02406 1383 -------------------------------------------------- 1383
BL01608___ykp 1399 ACAAACCATTTGGACCTCGAGTCCATTACAGCGCTGAATAACGGTTTAAT 1448
BSNT_02406 1383 -------------------------------------------------- 1383
BL01608___ykp 1449 CAGCTTTAAAGGCGCCATGCTGTTTACATCTCATGACCATCAGTTTGTCC 1498
BSNT_02406 1383 -------------------------------------------------- 1383
BL01608___ykp 1499 AAACAATCGCCAACCGGATCATCGAGATCACGCCAAACGGAATCGTCGAT 1548
BSNT_02406 1383 -------------------------------------------------- 1383
BL01608___ykp 1549 AAACAAATGAGCTACGACGAGTTTTTGGAAGACAAAACGGTTCAGGACAA 1598
BSNT_02406 1383 ---------------------- 1383
BL01608___ykp 1599 GCTTGCTGAACTTTACGCGTAA 1620
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