Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02397 and BL01601
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_02397___yknX.1.5803.seq
# -bsequence dna-align/BL01601___yknX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02397___yknX-BL01601___yknX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02397___yknX-BL01601___yknX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02397___yknX
# 2: BL01601___yknX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1224
# Identity: 771/1224 (63.0%)
# Similarity: 771/1224 (63.0%)
# Gaps: 177/1224 (14.5%)
# Score: 2161.0
#
#
#=======================================
BSNT_02397___ 1 ATGAAAAAAGTCTGGATCGGAATTGGAATCG-CAGTTATAGTCGCT---- 45
|||||||||.|.|||||| ||.|||| || ||.|.|..|||
BL01601___ykn 1 ATGAAAAAAATATGGATC------GGCATCGTCA-TTGTTGGGGCTGCTG 43
BSNT_02397___ 46 --CTTTTTGTTGGAATCAATATATACCGGTCTGCCGCTCCAACAAGCGGC 93
||||||.|.|||.||||..|.|||||.| |.|.||.|||.|||||.
BL01601___ykn 44 CGCTTTTTATCGGACTCAACCTCTACCGCT---CGGTTCAAACGAGCGGA 90
BSNT_02397___ 94 AGCGCCGGCAAG--GAGATACAGACGGGGAGCGTTGAAGAAAATGAAATC 141
.|.||.| ||| |.|.|.||.||.|.||...|.||||||||.||.||.
BL01601___ykn 91 GGGGCTG--AAGAAGCGGTTCAAACCGTGAAATTGGAAGAAAAAGAGATT 138
BSNT_02397___ 142 TCATC--AACGGTTATGGTTCCTGGCACGCTAAAATTTTCAAATGAACAG 189
||.|| || ||.||||||||.||.||.||..|.|||.||||.|||||.
BL01601___ykn 139 TCTTCTGAA--GTCATGGTTCCGGGGACCCTTCAGTTTGCAAACGAACAA 186
BSNT_02397___ 190 TATGTCTTTTATGAAGCGGATAAAGG-GACATTAGAAGACATTAAAGTTA 238
||.|..|.||.||||.|.||.||||| ||.||| |..|||||.|||||.|
BL01601___ykn 187 TACGAATATTTTGAACCTGAAAAAGGAGAAATT-GCCGACATCAAAGTAA 235
BSNT_02397___ 239 AGGAAGGCGATAAAGT-TAAAAAGGGCACG-CCTTTAGTCACCTATACAA 286
|.|||||||||||.|| .|||||||..|.| .|||| ||||||||||||
BL01601___ykn 236 AAGAAGGCGATAAGGTGAAAAAAGGAGATGTGCTTT--TCACCTATACAA 283
BSNT_02397___ 287 ATGAGCAGCTGAGCCTGGAAAAAGAACAGAACCAGTTAACGTCTGAATCC 336
||||..|..|..||||||||||.||.||.|||...|||.|...|.||||.
BL01601___ykn 284 ATGAAGAAATTCGCCTGGAAAAGGAGCAAAACGCTTTATCCATTCAATCG 333
BSNT_02397___ 337 AACCGG--CTTCAAATTGACCAAATTCAA--GAAAAGTTAAAAGCCTTAG 382
|| || ||.||..||||.||..|| || |||||.|.|..|||| ||.
BL01601___ykn 334 AA--GGATCTCCAGCTTGAACAGGTT-AAGCGAAAAATCAGCAGCC-TAA 379
BSNT_02397___ 383 ACAGCAAAGAAAGA-GAACTGGAAAAAC--AGGTAGGAAAGAAAGAAGCA 429
|.||| |||.|||| ||.||| ||..| ||.|.|||..|.||.||||.
BL01601___ykn 380 AAAGC-AAGGAAGACGAGCTG--AAGGCTGAGCTCGGAGCGGAAAAAGCC 426
BSNT_02397___ 430 GAAAAACAAATCGAATCTGAACGGACAGAGCTTCAAATGCAGAAAAAAA- 478
.|.|..|||||.||....||||||.||.|||||.||||| |||.||||
BL01601___ykn 427 AAGAGGCAAATTGATGAAGAACGGTCACAGCTTGAAATG--GAAGAAAAA 474
BSNT_02397___ 479 ------CAGCGGAGATCGAATTAAAACAAACCGAGCTTCAGCGGCAGTCA 522
|||| |.|||.|.||||||.||||.||.||...|.|..|.
BL01601___ykn 475 TCGCTCCAGC-----TTGAACTGAAACAAGCCGACCTGCAAAAGGAAACG 519
BSNT_02397___ 523 CTTG----CCAACCGGGTGTCAGATTTAGAAGTGAAAAGCGAAATTGAAG 568
||.| ..||.||| |||...|..||||||||||||..|||||.|
BL01601___ykn 520 CTCGAGAAGAAATCGG----CAGCGCTGCAAGTGAAAAGCGGCATTGACG 565
BSNT_02397___ 569 GCACCGTTATTTCTGTCAACCAAGAAGCGGCATCCAAA--AAGTCAGATA 616
|.||.||||||.|.||..||.||.||||.|| |.|||| || ||.||||
BL01601___ykn 566 GGACGGTTATTACCGTTGACAAACAAGCCGC-TGCAAAGCAA-TCGGATA 613
BSNT_02397___ 617 TTCAAGAGCCTGTCATACATATCGGCAACCCAAAAGAC---CTTGTCGT- 662
|||||.||||.||.||||||||.||.||| .|.||| ||||||||
BL01601___ykn 614 TTCAAAAGCCGGTTATACATATAGGTAAC---GAGGACAAGCTTGTCGTT 660
BSNT_02397___ 663 ---------CTCAGGGAAATTGTCTGAATACGATACATTGAAAGTCAAAA 703
||| ||.||.||.||.|||||||||||.||||
BL01601___ykn 661 AAAGGCGTGCTC----------TCAGAGTATGACACATTGAAAGTGAAAA 700
BSNT_02397___ 704 AAGGCCAGAAGGTCACACTCACTTCAGATGTAATACAGGGTAAAACATGG 753
|.||.|||||.||.||..||||.||.|||||.||.||...||||...|||
BL01601___ykn 701 AGGGACAGAACGTGACCATCACGTCGGATGTCATCCAAAATAAAGAGTGG 750
BSNT_02397___ 754 AAAGGCACGGTTTCCGCAGTCGGGCTTGTTCC----------GGATCAGC 793
...||.|.|||.||...||||||..|.||||| |..||.||
BL01601___ykn 751 CGTGGAAGGGTATCACAAGTCGGATTGGTTCCCAAAGAAGAGGCGTCTGC 800
BSNT_02397___ 794 AGGAGAGCGCTGCGGCACAAGGAACA---GAACAGGCGGTCCAATACCCG 840
|| |.|.|||| |||||| ||.||.||.||.|||||.|||
BL01601___ykn 801 AG----GTGTTGCG------GGAACAAAGGAGCAAGCTGTTCAATATCCG 840
BSNT_02397___ 841 CTTCAAGTGAAAATAAAAGGAAATCTTCCAGAAGGAAAGCCAGGCTTTAA 890
.||.||||.|||||||||||..|.|.|||..|||.||||.|.||||||||
BL01601___ykn 841 TTTGAAGTCAAAATAAAAGGGGAGCGTCCTAAAGCAAAGTCCGGCTTTAA 890
BSNT_02397___ 891 ATTTATCATGAATATTGAAA--CAGATAAACGG---AAAGCAAATACG-- 933
|||||.|.|..||| ||| |||| |||| ||| ||
BL01601___ykn 891 ------CATGATTCTCAAAATCCAG----ACGGACAAAAG--AAT-CGTT 927
BSNT_02397___ 934 ------CTTCCTTCAAAGGCAGTCAAAAAAGAAGATGACCAATATTATGT 977
||||||..|.|.||.|||||..|.||.|.|||.||||..||.||
BL01601___ykn 928 CAGGCTCTTCCTGAAGATGCCGTCAAGCAGGATGGTGATCAATCATACGT 977
BSNT_02397___ 978 GTATACAGTAAAAGACGGAAAAGCAAAGCGAGTTAATGTCAAAATCGGCG 1027
||.|.|.||||.||||||.||.|||||.||..|.||||||||||.|||.|
BL01601___ykn 978 GTTTGCCGTAAGAGACGGCAAGGCAAAACGGATCAATGTCAAAACCGGTG 1027
BSNT_02397___ 1028 AAGTGA---CAGATGACCTGACAGAAATTAAAGAGGGGCTTAC--CCAAG 1072
| || ||||.|.|||....|||||||..|..||.||.|| .||||
BL01601___ykn 1028 A---GAAAGCAGACGGCCTCGTTGAAATTACCGGCGGTCTGACAAACAAG 1074
BSNT_02397___ 1073 ATGATCAAGTCATTTTGAATCC--------ATCTGATCAGGTGACTGACG 1114
||.|..||.||....||.|| ||.|||..|| ||
BL01601___ykn 1075 --GACCCGGTTATCGCAAACCCGGCCGAGGATATGAAAAG--------CG 1114
BSNT_02397___ 1115 GAATGGAAGTGAAATCTTAA---- 1134
|||.||||||| ||.|||.|
BL01601___ykn 1115 GAACGGAAGTG-AAGCTTCAATGA 1137
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