Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02395 and BL01599
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_02395___yknV.1.5803.seq
# -bsequence dna-align/BL01599___yknV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02395___yknV-BL01599___yknV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02395___yknV-BL01599___yknV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02395___yknV
# 2: BL01599___yknV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1873
# Identity: 1369/1873 (73.1%)
# Similarity: 1369/1873 (73.1%)
# Gaps: 110/1873 ( 5.9%)
# Score: 4853.0
#
#
#=======================================
BSNT_02395___ 1 ATG---AAACAAGCGAAAAAACA---GGGGATTTTAGAGC--GTTTCTAT 42
||| ||.||.||||||||||| |..||| ||.| |||| |.|
BL01599___ykn 1 ATGGAAAACCAGGCGAAAAAACAAACGTTGAT----GAACCGGTTT-TTT 45
BSNT_02395___ 43 TACTCTTCAGATGAAATCATTGAAAAGCCGTTTAACTGGGCTCAAATGTG 92
||..|||||||..||||||||||||||||.|||||||||||.||.|||||
BL01599___ykn 46 TATACTTCAGACCAAATCATTGAAAAGCCTTTTAACTGGGCGCAGATGTG 95
BSNT_02395___ 93 GCGGCTGCTGAGCTATGTCAAACCATATCGAAAAACAATTT--TGCCGCT 140
|.|||||||.|..|||.|.||.||.||.|||||| ||||| |||||||
BL01599___ykn 96 GAGGCTGCTTAAATATTTAAAGCCCTACCGAAAA--AATTTGCTGCCGCT 143
BSNT_02395___ 141 TTCTTTTCTCACCGTATTAATTGGCACTGCTGTGA---AGCTTGTGATCC 187
.||.|||.|.||.||..|.|| |.|.||.|.|| .|||.|.|.|.|
BL01599___ykn 144 GTCGTTTTTAACGGTCATGAT---CTCGGCGGCGATCCGGCTGGCGGTGC 190
BSNT_02395___ 188 CCATTTTGATCGGCGTTTATGTTCTTGATCAAGCGATTACA----GGGA- 232
|.||||||||||||||.||||..||.||.||||||||..|| ||||
BL01599___ykn 191 CGATTTTGATCGGCGTCTATGCGCTCGACCAAGCGATCGCAGGCCGGGAT 240
BSNT_02395___ 233 --GAAACTCGGAGCTGCTGATTCAGCTCATTTTTATTATTAGCGGTTTAT 280
|||.|| .||..||||| ||.||.|...|.||.||.||.||.|
BL01599___ykn 241 ATGAATCT----TCTTGTGATT---CTGATCTCCGTCATCAGTGGGTTGT 283
BSNT_02395___ 281 ATGTCCTCAATTACGCCGCCAATGTGTTAAGAATCAGGTGGATGAATCAG 330
||.|..|||||||.|....|||||||.|.||||||.|.||||||||..||
BL01599___ykn 284 ATCTTGTCAATTATGTTAGCAATGTGCTGAGAATCCGCTGGATGAACAAG 333
BSNT_02395___ 331 CTTGGCCAGCATGTCATTTACGATTTGCGACAGCATTTATTTACCCATGT 380
|||||||||||||||||.||.|||.|..||||||||||.|||||.|||||
BL01599___ykn 334 CTTGGCCAGCATGTCATATATGATCTCAGACAGCATTTGTTTACGCATGT 383
BSNT_02395___ 381 GCAGCGCTTATCCCATCGATTTTTTGATCAGCGGTCGGCGGGATCGATCT 430
.|||||..|.||.||.||.|||||.||..||||.|||||.||.||.|||.
BL01599___ykn 384 TCAGCGGCTGTCGCACCGCTTTTTCGACGAGCGTTCGGCAGGTTCAATCC 433
BSNT_02395___ 431 TAGTCAGGATCATGAATGATATTAACTCTCTTCAGGAGCTCTTTACAAGC 480
|.|||.|||||||||||||.||.||.|||.|.|||||.||.|||||.|||
BL01599___ykn 434 TTGTCCGGATCATGAATGACATCAATTCTTTGCAGGAACTGTTTACGAGC 483
BSNT_02395___ 481 GGAGTCATCAATTTGTTGACCGA---CTTGCTGCTTCTGGCCGGCGTG-- 525
||||||||||||||.||||..|| .|||||.|||.| ||
BL01599___ykn 484 GGAGTCATCAATTTATTGATGGATATTTTGCTTCTTTT--------TGGA 525
BSNT_02395___ 526 ATT---ATCATTTTGTTTACGCTGAGCCCTGAGCTGACTATAGCCATCAT 572
||| .|||||.||||..||||.||.|||||||||||.||.|||||.||
BL01599___ykn 526 ATTGTCGTCATTCTGTTCTCGCTCAGTCCTGAGCTGACCATCGCCATTAT 575
BSNT_02395___ 573 GGTGACATTGCCGATTATGTTTTTTATTTCAACAAGTCTCAGAAAAAAAA 622
||||||..||||..|.|||||.||.|||||.||.|.||||||||..||||
BL01599___ykn 576 GGTGACGCTGCCTGTGATGTTCTTCATTTCTACTAATCTCAGAAGGAAAA 625
BSNT_02395___ 623 TACGCCGATCCTGGCAAACGGTACGGCTAAAGCAATCGAAGCTCAACTCT 672
|.||.|||||||||||||.|||.||..|||||||.||.|||||.||.||.
BL01599___ykn 626 TCCGGCGATCCTGGCAAAAGGTGCGCTTAAAGCAGTCCAAGCTGAATTCC 675
BSNT_02395___ 673 CATCTAAACGAAAGCATTCAGGGCATCCGGGTCACACAGGCATTTACGCA 722
|||.|.||||||||||||||.||||||||||||||.|||||||||||.||
BL01599___ykn 676 CATTTGAACGAAAGCATTCAAGGCATCCGGGTCACTCAGGCATTTACTCA 725
BSNT_02395___ 723 GGAAGAAGAAAACATGGCGTATTTTGACGGTGTCAATCAG-GAGAACTAC 771
||||.||||.||.|||..|||||||||.||.||||| ||| |||||||..
BL01599___ykn 726 GGAAAAAGAGAATATGATGTATTTTGAAGGCGTCAA-CAGTGAGAACTTT 774
BSNT_02395___ 772 GAATCATGGCGGGAAGCAACTAGAAAAAATGCCATGTTCCGTCCGCTGGT 821
|||.|.|||||||||||.||.|.|||||||||.|..|||||||||||.||
BL01599___ykn 775 GAAGCCTGGCGGGAAGCGACGAAAAAAAATGCGACTTTCCGTCCGCTTGT 824
BSNT_02395___ 822 AGAAATGACGAATGCGATTGGGACGGCTGTCTTGATTTGGTATGG----A 867
|||||||||.||.||..|.||||||||..|.||.||.|||||.|| |
BL01599___ykn 825 AGAAATGACAAACGCTGTCGGGACGGCCATTTTAATCTGGTACGGCTCAA 874
BSNT_02395___ 868 GCCACACTCATCATGAATGAAACCATCACGATTGGCGTCTTCGTTTCTTT 917
|| .|.|||||.||||||||.||||||||.||.||.||.||.||.||
BL01599___ykn 875 GC----TTGATCATCAATGAAACGATCACGATCGGTGTATTTGTATCGTT 920
BSNT_02395___ 918 TGCTTTTTATCTGGGTATGTTTTGGGAACCAATTTCGAGACTGGGTCAGG 967
.||.||.|||||.||.|||||.|||||.||.|||||.||.||.||.||.|
BL01599___ykn 921 CGCCTTCTATCTCGGAATGTTCTGGGAGCCGATTTCAAGGCTCGGCCAAG 970
BSNT_02395___ 968 TCTATAATCAGCTGTTAATGGGGATGGCATCATCAGAACGGATTTTTGAG 1017
||||.||.||||||||.|||||||||||.||.|||||.|||||.|||||.
BL01599___ykn 971 TCTACAACCAGCTGTTGATGGGGATGGCTTCGTCAGAGCGGATCTTTGAA 1020
BSNT_02395___ 1018 TTTCTGGACGAACAGCCAAATGT------CAAGG-AGAAGCCGAATGCCA 1060
||||||||.|||.||||.|..|| ||||| |||.||.|
BL01599___ykn 1021 TTTCTGGATGAAAAGCCGAGCGTTGCAGACAAGGAAGATGCGG------- 1063
BSNT_02395___ 1061 TTCATAATGAAAAGA--TAAATGGGGAGATCAGTTTTGAAGAGGTTGAAT 1108
|||.||| |||||| ||||.||...||||...||||||.||||.||||
BL01599___ykn 1064 -TCAAAAT-AAAAGAATTAAAAGGCCGGATCGAATTTGAACAGGTGGAAT 1111
BSNT_02395___ 1109 TTTCGTATGATGAAAAACGAAAAGCCCTTCACGCCGTTTCTTTCTCTATT 1158
||||.|||||.|..||.||.||.||.||.|||..|.||||.||....||.
BL01599___ykn 1112 TTTCTTATGACGGGAACCGCAAGGCGCTGCACAGCATTTCATTTGAGATA 1161
BSNT_02395___ 1159 CCTGCAGGCTCGACGCTTGCGCTTGTCGGGCATACAGGGAGC-GGGAAGA 1207
|||||.||.||..||||||||||||||||.|||||| |||.| |||||||
BL01599___ykn 1162 CCTGCGGGATCATCGCTTGCGCTTGTCGGACATACA-GGATCAGGGAAGA 1210
BSNT_02395___ 1208 CGACGATTGCGAATTTAATCAGCCGTTTTTATGATGCGACCGGAGGCACC 1257
|||||||.||.|||.|.||||||.|.|||||.|||||.||.||.||..|.
BL01599___ykn 1211 CGACGATCGCAAATCTGATCAGCAGGTTTTACGATGCAACAGGCGGGGCT 1260
BSNT_02395___ 1258 ATTAAAATAGACGGTATACCGATTAAGGATCTTTCCCTTGCCAGTCTGCG 1307
.|.|||.|.||||||||||||||||..|||.|.||.|||.||..|||.||
BL01599___ykn 1261 GTCAAAGTGGACGGTATACCGATTACCGATATCTCGCTTTCCGATCTTCG 1310
BSNT_02395___ 1308 TTCACAAATCAGCATTGTCCTGCAAGATACATTTATTTTCTCTGGGACCA 1357
|||.|||||||||||.||.|||||.||.||.||||||||.||.||.||.|
BL01599___ykn 1311 TTCGCAAATCAGCATCGTGCTGCAGGACACGTTTATTTTTTCCGGAACGA 1360
BSNT_02395___ 1358 TCATGGAAAATATTCGTTTTGGAAGGCCAAATGCTTCGGATGAGGAGGTG 1407
|.||||||||||||||||||||..|.||.||.||..|.|||||.||.|||
BL01599___ykn 1361 TTATGGAAAATATTCGTTTTGGCCGTCCGAACGCCGCCGATGAAGAAGTG 1410
BSNT_02395___ 1408 ATGAAAGCGTCCCAAGCGGTCGGAGCGGATGAGTTTATTTC--CGATTTA 1455
||..||||..|..||||.||||||||.|||..||||||||| ||.||
BL01599___ykn 1411 ATCGAAGCAGCAAAAGCTGTCGGAGCCGATTCGTTTATTTCAGCGCTT-- 1458
BSNT_02395___ 1456 GCGGAA-GGATACGCAACAGAGGTAGAGGAAAGGGGCAGCGTACTGTCTG 1504
|.||| ||||||||.|||||.||.||.|||.|.||||..|||.|.||.|
BL01599___ykn 1459 -CCGAATGGATACGCCACAGAAGTGGAAGAACGCGGCAATGTATTATCGG 1507
BSNT_02395___ 1505 CCGGTCAGCGTCAGCTCATTTCATTTGCAAGAGCATTGCTCGCCGATCCG 1554
|.|||.||||.|||||||||||||||||.||.||..|.||.||.|||||.
BL01599___ykn 1508 CAGGTGAGCGGCAGCTCATTTCATTTGCGAGGGCGCTTCTGGCAGATCCT 1557
BSNT_02395___ 1555 GCTATTATCATCCTTGACGAAGCAACGGCAAGCATTGATACAGAGACAGA 1604
..||||.|.||||||||.||||||||.|||||||||||.|||||.||.||
BL01599___ykn 1558 CGTATTCTAATCCTTGATGAAGCAACCGCAAGCATTGACACAGAAACGGA 1607
BSNT_02395___ 1605 AGTAAAAATTCAGCAAGCGTTAAAAACGCTTCTGAAAGGGCGTACAGCAG 1654
|||.|||||.|||...||.||.|||||.||.||..|.||..|.||.||..
BL01599___ykn 1608 AGTCAAAATCCAGGCTGCCTTGAAAACACTGCTCCATGGCAGAACGGCTA 1657
BSNT_02395___ 1655 TGATGATCGCTCACAGATTGTCTACGATCCGCGACGCCGACCGCATCATT 1704
|.||||||||||||||..|.||.|||||..|.||.||.||....|||.|.
BL01599___ykn 1658 TTATGATCGCTCACAGGCTTTCAACGATAAGGGATGCGGATAAAATCCTG 1707
BSNT_02395___ 1705 GTTCTTGATCACGGCAGGAAAATAGAAGAAGGGA---ACCATG-ATCAGC 1750
||||||||.||||||.||||||||||||||||.| ||||.| ||
BL01599___ykn 1708 GTTCTTGACCACGGCCGGAAAATAGAAGAAGGAAATCACCAGGAAT---- 1753
BSNT_02395___ 1751 TGCTCGCTAAAGGAGGCATTTATGCCGGGCTTGTGAAAGCGCAATACAGC 1800
||.|||..|||.|.||.||.|||...|.|||.||.||||||||.| |.|
BL01599___ykn 1754 TGATCGGGAAACGTGGAATGTATTATGAGCTGGTAAAAGCGCAGT--ATC 1801
BSNT_02395___ 1801 A-------CAGCGATAGAA-TAA 1815
| |||||| || |||
BL01599___ykn 1802 AAATGTTTCAGCGA---AACTAA 1821
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