Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01952 and BL01588

See Amino acid alignment / Visit BSNT_01952 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_01952___thiG.1.5803.seq
#    -bsequence dna-align/BL01588___thiG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01952___thiG-BL01588___thiG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01952___thiG-BL01588___thiG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01952___thiG
# 2: BL01588___thiG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 789
# Identity:     576/789 (73.0%)
# Similarity:   576/789 (73.0%)
# Gaps:          45/789 ( 5.7%)
# Score: 2018.5
# 
#
#=======================================

BSNT_01952___      1 ATGTTAACAATTGGCGGAAAAC--CA--TTTCAATCAAGATTGCTGCTGG     46
                     |||||||.|||   ||.|.|.|  ||  |||| |||||||||..||||.|
BL01588___thi      1 ATGTTAAAAAT---CGCAGATCGTCAATTTTC-ATCAAGATTATTGCTCG     46

BSNT_01952___     47 GCACGGGGAAATACCCATCGTTTGACATTCAAAAGGAAGCAGT-AGCTGT     95
                     |.||.|||||.||.||.||.|||||.||||||||.||.||.|| ||| |.
BL01588___thi     47 GTACAGGGAAGTATCCGTCATTTGAGATTCAAAAAGAGGCCGTCAGC-GC     95

BSNT_01952___     96 TTCCGAGTCTGATATTTTAACCTTTGCTGTGCGGA-GAATGAACATCTTT    144
                     .||.||.||.||.||..|.||.|||||.|| |.|| |.|||||.||.|||
BL01588___thi     96 ATCTGAATCGGAGATCCTGACGTTTGCCGT-CAGACGGATGAATATTTTT    144

BSNT_01952___    145 GATGCATCTCAGCCGAATTTTCTGGAACAGCTTGATTTATCCAAATATAC    194
                     ||.|.|||||||||.||||||.||||.|||||.||||||..|...|||||
BL01588___thi    145 GAAGAATCTCAGCCTAATTTTTTGGAGCAGCTCGATTTAAGCCGTTATAC    194

BSNT_01952___    195 GCTTTTGCCGAATACAGCGGGCGCCAGCACTGCTGAAGAAGCGGTTCGGA    244
                     |||||||||||||||.||.||.||.|..||.|||||.|||||.||.||||
BL01588___thi    195 GCTTTTGCCGAATACGGCAGGAGCAAAAACGGCTGAGGAAGCCGTCCGGA    244

BSNT_01952___    245 TTGCAAGGCTGGCAAAAGCGTCAGGCCTTTGTGACATGATTAAAGTTGAA    294
                     |.||.|.|||.||.|||||....||.|||||.||||||||.|||||.|||
BL01588___thi    245 TCGCCAAGCTTGCCAAAGCAAGCGGTCTTTGCGACATGATCAAAGTCGAA    294

BSNT_01952___    295 GTCATCGGATGCAGCCGTTC-CTTGCTGCCTGACCCTGTTGAGACATTAA    343
                     ||.|||||.||...|||||| ||| |||||.|||||.||.||.||..|.|
BL01588___thi    295 GTGATCGGCTGTGACCGTTCGCTT-CTGCCGGACCCGGTAGAAACGCTGA    343

BSNT_01952___    344 AAGCGTCTGAACAGCTT-CTTGAAGAAGGCTTTATTGTGCTCCCGTACAC    392
                     |.|||||.||| |.||| ||||||||||||||.|||||.||.|||||.||
BL01588___thi    344 AGGCGTCAGAA-ACCTTGCTTGAAGAAGGCTTCATTGTACTGCCGTATAC    392

BSNT_01952___    393 GTCGGATGACGTTGTGCTGGCGAGAAAGCTGGAAGAGCTCGGCGTTCATG    442
                     .||||||||.||.||.||.||||||||.||.||||||||||||||.||.|
BL01588___thi    393 ATCGGATGATGTCGTCCTCGCGAGAAAACTTGAAGAGCTCGGCGTGCACG    442

BSNT_01952___    443 CCATCATGCCGGGTGCATCTCCGATTGGATCAGGACAAGGAATCTTAAAT    492
                     ||||.|||||.||.||.||||||||.||.||.||||||||||||.|.|||
BL01588___thi    443 CCATTATGCCCGGGGCCTCTCCGATCGGTTCGGGACAAGGAATCATCAAT    492

BSNT_01952___    493 CCTTTGAATCTGTCGTTTATTATTGAACAGGCGAAAGTGCCGGTCATCGT    542
                     ||..|.||.||||||||.||.|||||||||||.||.||.||.||.|||||
BL01588___thi    493 CCGCTCAACCTGTCGTTCATCATTGAACAGGCTAAGGTTCCCGTTATCGT    542

BSNT_01952___    543 GGATGCTGGAATCGGCTCGCCTAAAGATGCGGCATACGCCATGGAGCTTG    592
                     ||||||.||||||||.||.||.|||||||||||||||||.|||||.||.|
BL01588___thi    543 GGATGCCGGAATCGGTTCTCCGAAAGATGCGGCATACGCAATGGAACTCG    592

BSNT_01952___    593 GAGCGGATGGCGTACTGCTCAATACGGCTGT-ATCGGGCGCTGACGATCC    641
                     |.||.||.||.||.||..|.||.|||||.|| |.|||| ||..|.|||||
BL01588___thi    593 GTGCTGACGGGGTGCTTTTGAACACGGCAGTGAGCGGG-GCGAAAGATCC    641

BSNT_01952___    642 TGTGAAAATGGCTCGTGCCATGAAGCTCGCGGTGGAAGCAGG-----ACG    686
                     .||..|||||||....||.||||||.|.||.||.|||||.||     .||
BL01588___thi    642 GGTCCAAATGGCGAAGGCTATGAAGTTTGCCGTTGAAGCGGGCAGGCTCG    691

BSNT_01952___    687 CCTTTCTTATGAGGCGGGCCGAATCCCGCTTAAGCAATACGGAACGGCAA    736
                     ..|.||||     ||.||.|||||.|||...|||.|.|||||.|..||.|
BL01588___thi    692 GATATCTT-----GCCGGACGAATTCCGGAAAAGAACTACGGCATCGCCA    736

BSNT_01952___    737 GCAGTCCGGTAGAAGGTCTTCCTGTA--TGA--------    765
                     ||||.||.|.||||||       |.|  |||        
BL01588___thi    737 GCAGCCCTGAAGAAGG-------GAAGTTGACGATTTGA    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01952 and BL01588

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
