Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01956 and BL01586
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_01956___yjbV.1.5803.seq
# -bsequence dna-align/BL01586___yjbV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01956___yjbV-BL01586___yjbV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01956___yjbV-BL01586___yjbV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01956___yjbV
# 2: BL01586___yjbV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 879
# Identity: 565/879 (64.3%)
# Similarity: 565/879 (64.3%)
# Gaps: 123/879 (14.0%)
# Score: 1718.5
#
#
#=======================================
BSNT_01956___ 1 ATGAGTATATATAAAGCATTGACAATCGCCGGATCAGATTCAGGCGGCGG 50
|||||.||||||||||||||.||||||||||||||.||||||||.|||||
BL01586___yjb 1 ATGAGCATATATAAAGCATTAACAATCGCCGGATCGGATTCAGGAGGCGG 50
BSNT_01956___ 51 CGCAGGGATACAGGCTGATATTAAAACCTTTCAAGAGCTTGATGTATTCG 100
.||.||.||.||.||.||.||||||||.|||||.|||||||..||.||||
BL01586___yjb 51 AGCCGGCATTCAAGCCGACATTAAAACATTTCAGGAGCTTGGCGTCTTCG 100
BSNT_01956___ 101 GAATGTCTGCGATTACAGCGGTAACCGCTCAAAATACGCTTGGCGTTCAT 150
|.|||.|.|...|.|||||.||.||.||.||||||||....||.|||||.
BL01586___yjb 101 GCATGACAGTTTTGACAGCAGTCACTGCGCAAAATACAACAGGGGTTCAC 150
BSNT_01956___ 151 GGGGTGCATCCGCTGACTGTAGAGGCGCTGAG---ACAGCAAATTGACGC 197
||.||..|.|||||..||...||.|||||..| |||| |||||.||
BL01586___yjb 151 GGCGTCTACCCGCTTTCTCCGGAAGCGCTCGGCGCACAG---ATTGATGC 197
BSNT_01956___ 198 TGTTGCTGAGGATTTGAGACCGGATGCAGTCAAAACGGGAATGCTCTGGA 247
.||.||.||.|||||.|.|||.||.||.||.|||||.||.|||||.||||
BL01586___yjb 198 AGTGGCAGAAGATTTAAAACCTGACGCCGTGAAAACAGGGATGCTGTGGA 247
BSNT_01956___ 248 ATGCCGACATGATTGAAG-AAGTGGCAAGAAAAATTGACGAGTACG-GAT 295
..||.||.||||||||.| .|.| ||...||||||||..|..||.| |.|
BL01586___yjb 248 GCGCGGAGATGATTGAGGTCACT-GCTGAAAAAATTGCAGCATATGAGCT 296
BSNT_01956___ 296 TCAATCGTGTAATTGTTGATCCGGTTATGATCGCAAAGGGCGGGGCATCC 345
| ||.|||||.||.||.|||||.||.||||||||.||.|||||.||.||.
BL01586___yjb 297 T-AAACGTGTGATCGTCGATCCTGTCATGATCGCCAAAGGCGGCGCTTCA 345
BSNT_01956___ 346 TTGCTGCGTGATGAGTCAGTTGCCACCTT--AAAGGAG-----------T 382
.|..||..|||.||..|.||||..||.|| ||.||.| |
BL01586___yjb 346 CTATTGAATGAGGAAGCTGTTGAAACATTGAAACGGCGCCTTCTTCCGCT 395
BSNT_01956___ 383 TGCTCATTCCAAGAAGCTACGCGATTACGCCGAATGTCCCGGAAGCAGAA 432
|||| ||.|||.|.|||||.||..|.||.|||||.|||
BL01586___yjb 396 TGCT-------------TATGCGGTAACGCCAAACATTCCCGAAGCCGAA 432
BSNT_01956___ 433 ACGCTGACAGGAATGA------CAATCAGCTCGCTGGATGACCGGAAAAA 476
..|||||||||.| || |||.|| .||||.|||||.|||||
BL01586___yjb 433 GTGCTGACAGGGA-GAAGCATTCAAACA-----ATGGAAGACCGCAAAAA 476
BSNT_01956___ 477 AGCAGCAGAGCAGCTCGTCA--------AGATGG--GTGCGCAGCATGTC 516
||||||||||.| |.|||| ||.||||.|| |.
BL01586___yjb 477 --------AGCAGCTCGTGACTTGCATGAAATGGGCGTCCGCAACA--TT 516
BSNT_01956___ 517 ATTATCAAAGGCGGGCACCAGCCTGAGGA---CAATCACA-TTACTGACC 562
||.|||||.||.||.||.||||||||||| ||| | |.||.||.|
BL01586___yjb 517 ATCATCAAGGGAGGTCATCAGCCTGAGGATGGCAA----AGTAACCGATC 562
BSNT_01956___ 563 TTCTTTTTGATGGCAG-CATGTTTATGCAAATCACCCATCCTTATATCAA 611
|.||.||.||.|| || .|.|||.|...|||..|||.||.|.|||||.||
BL01586___yjb 563 TCCTCTTCGACGG-AGAGACGTTCACAGAAAAAACCAATTCCTATATTAA 611
BSNT_01956___ 612 TACGAAGCATACGCATGGCACAGGCTGCACCTTTGCTGCGGCTTTAACGG 661
.|||||..||||.|||||.||||||||.||.|||||.||||||.|.||||
BL01586___yjb 612 GACGAAAAATACCCATGGAACAGGCTGTACATTTGCCGCGGCTCTTACGG 661
BSNT_01956___ 662 CCCAAACGGCTAAAGGAGACAGCATCCATCAG---------GCAT--TTG 700
|.|||.|.||.||||||.||.|.||.|| || |||| .||
BL01586___yjb 662 CGCAATCAGCGAAAGGAAACGGGATTCA--AGGAGCTTTCCGCATCGCTG 709
BSNT_01956___ 701 AGGTTGCGGCCAACTTT-GTCCGTGAAGCGGTGGAAAATACGCTCGGCAT 749
||| |||| ||||..||||||||.|.|.|.|..||.|...|
BL01586___yjb 710 AGG----------CTTTCGTCCACGAAGCGGTTGTACACAGCCTTGATTT 749
BSNT_01956___ 750 CGGATCGGGACACGGGCCGACAAACCATTTCGC-TTTTAAACGAAACAGC 798
.|||.|.||.|||||.|||||.||||||||.|| |.|.|||.|
BL01586___yjb 750 TGGAGCCGGCCACGGACCGACCAACCATTTTGCATATCAAAAG------- 792
BSNT_01956___ 799 TTAAATACAAGCC---GATGA-------- 816
|| ||.|||..| |.||.
BL01586___yjb 793 TT--ATCCAACGCAGGGTTGGAACTGTAG 819
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