Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03706 and BL01578
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_03706___yqgT.1.5803.seq
# -bsequence dna-align/BL01578___yqgT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03706___yqgT-BL01578___yqgT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03706___yqgT-BL01578___yqgT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03706___yqgT
# 2: BL01578___yqgT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1271
# Identity: 755/1271 (59.4%)
# Similarity: 755/1271 (59.4%)
# Gaps: 289/1271 (22.7%)
# Score: 2097.5
#
#
#=======================================
BSNT_03706___ 1 ATGGCGTTTATTACGGTGAAACCTGAGATCAAGAACAATTTGGCCAATGT 50
|||||.||.||.|...|.|||||.|||.|.|||.|.|||.||
BL01578___yqg 1 ATGGCATTCATCAACATCAAACCGGAGTTAAAGCAGAATATG-------- 42
BSNT_03706___ 51 GGCGAAAGA-----------ACTGAAGATAGACGAGGAATTGCTT---AA 86
|||||| .|||||.|||..| |||..|||| |.
BL01578___yqg 43 ---GAAAGACTGTCTGACATTCTGAACATACCC---GAACCGCTTTTAAT 86
BSNT_03706___ 87 AAGTGCAAATCGC-------TCCGCACAAAAACATCAATTGTATTGCCCT 129
.||||||||| || |||||..|..||| |.||||..||.
BL01578___yqg 87 CAGTGCAAAT-GCAAATGTATCCGCGGACGAAC------TTTATTTTCCG 129
BSNT_03706___ 130 GG----TTATGTGATAGAGGA--------GCATAGCGGCA---------- 157
|| |..|.|.||..|||| .|| |||.|||
BL01578___yqg 130 GGAGTATCTTTTCATGCAGGAAAAAACGTTCA-AGCAGCAGAAACATATG 178
BSNT_03706___ 158 AAGAGCTTCAA------ACCATTCAGGACATAAAGCGCTTTTTACAGCCT 201
||.||||.||| .|.|.|||..||| |.|||
BL01578___yqg 179 AACAGCTGCAATTATTGGCGAATCAATACA-------CGTTT-------- 213
BSNT_03706___ 202 CGGCAGCTGAAACTTTCAGATAGCTGGATTGAGCAAGAGAAAATCTA--- 248
|.||.|||| ||| |||.| ||.||||.| |
BL01578___yqg 214 --GAAGATGAA-----CAG-----TGGCT-------GACAAAAAC-AGCC 243
BSNT_03706___ 249 --TGATGATTCAGCTG---TTGAAAAGGAAATAAAGAAGATTATTG--AT 291
|.|.||||||||.| |..|||||||||| ..|.|||||...| ||
BL01578___yqg 244 GTTTACGATTCAGCAGAACTGAAAAAGGAAAT-TGGCAGATTGACGGAAT 292
BSNT_03706___ 292 GTTTTTCCGTTTGTCTCATGCCGGGAAATTGGCCGTTC-----TGTACTC 336
| .|||||||||||..|.|.|||....||.|||||.|| ||
BL01578___yqg 293 G-CTTTCCGTTTGTTACTTCCCGTATCATCGGCCGCTCAAGCATG----- 336
BSNT_03706___ 337 GGCAGGCCTAT-------------CTGGGAGCTGAAGGCTGGTGGGGAGC 373
|||..|||||| ||.||||||||| .
BL01578___yqg 337 GGCCAGCCTATATATGAACTGCTCCTTGGAGCTGAA-------------A 373
BSNT_03706___ 374 ATGCCGTAAAA--AAGGTCCATATGAACGCGTCATTTCATGCGAATGAGT 421
||||||.|||| ||.| ||||||||.||.||.||||||||.|||||.|
BL01578___yqg 374 ATGCCGGAAAAAGAACG--CATATGAATGCCTCTTTTCATGCCAATGAAT 421
BSNT_03706___ 422 GGATTACAACGTCTGTCCTGCTAAAATGGTTGAAGGAATACTGTATGTCA 471
||||.||.||.|||||..||.|.||||||.|.||.||||||||| |.|||
BL01578___yqg 422 GGATCACCACTTCTGTTTTGATGAAATGGCTCAAAGAATACTGT-TATCA 470
BSNT_03706___ 472 -TTATG--CTG--CAATTCGCCTTTCTTT-GGCTTTTCTC----CCATAA 511
||||| |.| ||...|| |||| ||.|||||.| |.|||
BL01578___yqg 471 TTTATGTACAGGCCAGACCG-----CTTTAGGTTTTTCGCCGCTCGATA- 514
BSNT_03706___ 512 AGCTGTTT--AACAGCACATCCTTATCCCTCGTTCCTCTTGTCAATCCGG 559
|.||| |.||.||.|.| |.|||.||||.||..|.||.|||||.|
BL01578___yqg 515 ---TTTTTTCATCAACAAAGC--TTTCCGTCGTGCCGATCGTTAATCCCG 559
BSNT_03706___ 560 ATGGCGTTGATCTTGTTTTAAACGGATCAGAAGTCA---TGGGAGCCAGA 606
|.||.|||||.|||||..|.|||||..|.| |||| |||||.|..|
BL01578___yqg 560 ACGGTGTTGACCTTGTACTTAACGGCCCCG--GTCATCTTGGGATCGCG- 606
BSNT_03706___ 607 AGAGATGAGCTCGAAAGGCTAAATGAACATCGTCCGAATTTTAATGAATG 656
|||||.|.|||.||...|.|.||.||.||||..|||.||||....|||||
BL01578___yqg 607 AGAGAAGCGCTGGATGAGATGAACGAGCATCAGCCGGATTTCCGGGAATG 656
BSNT_03706___ 657 GAAGGCGAATATAAACGGGGTTGATTTAAATAAACAATTTCCATCATTAT 706
|||.||.|||||||||||.||.|||||||||||.||.|||||.||.||.|
BL01578___yqg 657 GAAAGCCAATATAAACGGAGTGGATTTAAATAATCAGTTTCCGTCTTTCT 706
BSNT_03706___ 707 GGGAAATTGAAAAATACCGAAAACCG---ACAGCACC------CAG---C 744
||||.||.||||||.|..|||||||| |.|.|.|| ||| |
BL01578___yqg 707 GGGAGATCGAAAAACAAAGAAAACCGCCTAAATCCCCTTCCTACAGAGAC 756
BSNT_03706___ 745 TACCGCGATTTTCCGG----GAATCTCTCCGCTTACGGAGCCGGAATCTA 790
|||| |||| ||| |||||.||.||.||||||.|..
BL01578___yqg 757 TACC--------CCGGAGATGAA-----CCGCTGACAGAACCGGAAGCGG 793
BSNT_03706___ 791 TTGCGATG-------TACCGGCTGATC----ACGGAGAATCCGCCTGACA 829
..|||||| || ||| ||| |.|||||||||.
BL01578___yqg 794 CAGCGATGAGGGATTTA-------ATCGCAAACG----AGCCGCCTGACC 832
BSNT_03706___ 830 GACTGCTGGCTCTTCATACTCAAGGAGAAGAAATTTATTGGGGCTATAAA 879
|.||..||||.|||||.||.||.||.||.||||||||||||||.||.||.
BL01578___yqg 833 GGCTTGTGGCGCTTCACACACAGGGGGAGGAAATTTATTGGGGATACAAG 882
BSNT_03706___ 880 GGCCTTGAGCCTGAGGAATCTGCTGCCGTCAT--AAAGGATTTTGAGGAG 927
||..|.||||||...|||||.||||..||.|| ||| ..||||||...
BL01578___yqg 883 GGATTGGAGCCTCCTGAATCAGCTGATGTGATCCAAA--CATTTGAGCGC 930
BSNT_03706___ 928 TTAAGCGGGAACATTTATAAGGGAGTAAGGGATATAGACAGCTATGCTGG 977
.|.||||| |||||||||.||.||..||||||||||||||||.||
BL01578___yqg 931 CTGAGCGG------TTATAAGGGCGTCAGATATATAGACAGCTATGCAGG 974
BSNT_03706___ 978 ATTTCGTGATTGGTTTATTCACCATTATT--TTAAG-GAAGGGTATACGG 1024
||||.|.|||||||||||| ||||||| ..||| |||||.|||||.|
BL01578___yqg 975 ATTTAGAGATTGGTTTATT---CATTATTACGGAAGAGAAGGATATACTG 1021
BSNT_03706___ 1025 TGGAACTTGGAAAAGGCCAAAATCCTTTGCCGTTTCAGCAGTTTTCAC-A 1073
|.||||||||.|||||..||||||||||.|||.|..|.|| .|||.|| |
BL01578___yqg 1022 TTGAACTTGGCAAAGGAAAAAATCCTTTACCGCTGAAACA-ATTTGACGA 1070
BSNT_03706___ 1074 CATATAT----AACGCCACA--AA------CGGCATCTTGTGGAGGGCGT 1111
.|||||| ||.| ||.| || .||||||.|||
BL01578___yqg 1071 TATATATTGTAAAAG-CAGAGGAATACTTTGGGCATCCTGT--------- 1110
BSNT_03706___ 1112 TATTTTTTCA----TGAGTAA 1128
||||||.| |||
BL01578___yqg 1111 --TTTTTTGAAAGCTGA---- 1125
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