Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03695 and BL01573
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_03695___yqhA.1.5803.seq
# -bsequence dna-align/BL01573___yqhA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03695___yqhA-BL01573___yqhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03695___yqhA-BL01573___yqhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03695___yqhA
# 2: BL01573___yqhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 952
# Identity: 539/952 (56.6%)
# Similarity: 539/952 (56.6%)
# Gaps: 227/952 (23.8%)
# Score: 1407.5
#
#
#=======================================
BSNT_03695___ 1 -------------ATGATAGCTCTTGATCAGCACTT-----AACAGAGCA 32
||| .|||.|||.||.||.|..| ||||| ||.
BL01573___yqh 1 ATGGAAAACAAGCATG-CAGCCCTTTATGAGTATCTGGTCAAACAG-GCG 48
BSNT_03695___ 33 CAAAGAAGATATCACGCAACAATGGCTG----GAAGTTTGTACGTCAAAA 78
.|.||| |||||..|..|||||||| |||
BL01573___yqh 49 GACAGA----ATCACAGATGAATGGCTGTCCCGAA--------------- 79
BSNT_03695___ 79 GGCAGCTGGCTGTATTCAGCGAAAGATCAGCAAAAACTAGAACAAAAGTT 128
|||| |.|||.| ||||| |||||| .|.|||..|.|.
BL01573___yqh 80 --CAGC-GTCTGAA-------AAAGA-----AAAAAC-GGCACAGCAATA 113
BSNT_03695___ 129 AAAAGACCAGCATGAATTAT--TGGTGACCATC-GTAGCAAA---ATCCC 172
.||.||| .|||| ||| | ||..|||| ||
BL01573___yqh 114 CAAGGAC--------TTTATACTGG-------CTGTTTCAAAGGTAT--- 145
BSNT_03695___ 173 TTAGAAAAGAAGACGTAGAGG----ATG---------AGCTCAACCGGTG 209
||...|||||.|| |.||| ||| |||| .||||
BL01573___yqh 146 TTGCCAAAGATGA---ACAGGCGCTATGCTGGAATAAAGCT--TCCGG-- 188
BSNT_03695___ 210 GTCTCTTCAATGCGCCA--GA----------GACCGTGCCGTTCATG--A 245
.||||||| || |||.|.||.| ||| | |
BL01573___yqh 189 ---------GTGCGCCAAGGAAATTGCCTACGACAGGGCTG-TCA-GCCA 227
BSNT_03695___ 246 AGTGACGGTTACACAAAGTGTCGGCCA-------TTTTAACACCTTCAG- 287
|.|..|||||||..|||| || |||||| ||
BL01573___yqh 228 AATTCCGGTTACCGAAAG-------CATAAATGGTTTTAA-------AGT 263
BSNT_03695___ 288 --GCACATCATGTTTGAATGGATTCAGAAATTCAGCGAAGCTTCTTCTCA 335
|| |.|.|..|||.|||.||| ||.||..|||.| |.|||..|
BL01573___yqh 264 GTGC-CGTGAACTTTTAATAGAT---GAGATCGAGCAA----TTTTCAGA 305
BSNT_03695___ 336 AG-ACAT-CAGCATTCAG----------GAATTTTATGAGTGGAGCCGGA 373
.| |||| ||.||..||| ||.||||.| |
BL01573___yqh 306 TGAACATGCACCAGACAGTTCGAAAAAAGATTTTTTT------------A 343
BSNT_03695___ 374 TCTTGAATCAAAAC--------------ATTGATGAGATCATCGAAGTGT 409
|||.|||| |||| ||.||||||.||||.||...||
BL01573___yqh 344 TCTGGAAT--AAACAGCTTCACTTAATGATGGATGAGGTCATAGAGCAGT 391
BSNT_03695___ 410 TTACGGAAGAATATCACCAGGTGACCATGATACAATTAAACGCGCAAAAA 459
|||.....||||||.|.||...|||.|.||..|||||.||.|||||.|..
BL01573___yqh 392 TTATTCTTGAATATGAGCATACGACAAAGAGCCAATTGAAGGCGCAGACC 441
BSNT_03695___ 460 GAAATGATTAATGAATTGAGTGCGCCGATTATGCCGATTACTGATGGA-A 508
||.||||||...|||.||||.||.|||.|.||.|||.|..|.|| |.| |
BL01573___yqh 442 GAGATGATTCGCGAACTGAGCGCACCGGTCATACCGGTATCAGA-GCACA 490
BSNT_03695___ 509 TTGGGATTCTTCCGCTTGTCGGTGAAATTGATACGCACAGAGCGAGGACG 558
|.||..|.||.|||||..|.||||||||||||||.|||||.||.|.|..|
BL01573___yqh 491 TCGGTGTGCTGCCGCTCATTGGTGAAATTGATACTCACAGGGCAACGGTG 540
BSNT_03695___ 559 ATTTTGGAGTCTGTGCTGGAGCA--GTGCTCAGCGTTAAAGCTCTCGTAT 606
||..|.||.||||.|||...||| |||||.||| |..|.||||||.||
BL01573___yqh 541 ATCATTGAATCTGCGCTCACGCAGTGTGCTGAGC--TTCATCTCTCGCAT 588
BSNT_03695___ 607 TTATTTTTAGATATTTCGGGCGTTCCTATCGTTGATACCATGGTAGCCTA 656
.|.|||.|.||||||||.||.||||||.|.||.|||||.|||||.|||.|
BL01573___yqh 589 CTTTTTATTGATATTTCCGGTGTTCCTGTTGTCGATACGATGGTCGCCCA 638
BSNT_03695___ 657 TCAAATTTTTAAAGTGATTGACAGCACCAAATTGCTCGGCATTGAGACGA 706
|||..|.||.|||||..|.||||||||.||..||||.|||.||||.|||.
BL01573___yqh 639 TCAGTTGTTCAAAGTCGTAGACAGCACAAAGCTGCTTGGCGTTGAAACGG 688
BSNT_03695___ 707 TTATTTCAGGAATCAGGCCGGAAATTGCCCAAACTGTCGTGAAGCTGGGT 756
||.||||.||..|.||.|||||.|||||||||||.||.||||||||.||.
BL01573___yqh 689 TTCTTTCGGGTTTGAGACCGGAGATTGCCCAAACAGTTGTGAAGCTCGGC 738
BSNT_03695___ 757 CTGGATTTTTCGAATGTGAAAACCGAGCAAAGTCTTGCTAAAGCCCTGGC 806
.||||||||||..||.|.|||||.||.||.|||||||||||.||.||...
BL01573___yqh 739 ATGGATTTTTCACATATTAAAACAGAACAGAGTCTTGCTAAGGCGCTTTG 788
BSNT_03695___ 807 CAATAAAGGGTTTAAAAT-------------AA-----AAGAG--TGTTG 836
|||||||||.||....|| || ||||| .|||.
BL01573___yqh 789 CAATAAAGGCTTCTGCATCCATGAAGACGGCAAGGCCGAAGAGCAGGTTT 838
BSNT_03695___ 837 A- 837
|
BL01573___yqh 839 AA 840
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