Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03682 and BL01569
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_03682___comGD.1.5803.seq
# -bsequence dna-align/BL01569___comGD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03682___comGD-BL01569___comGD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03682___comGD-BL01569___comGD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03682___comGD
# 2: BL01569___comGD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 517
# Identity: 245/517 (47.4%)
# Similarity: 245/517 (47.4%)
# Gaps: 188/517 (36.4%)
# Score: 482.0
#
#
#=======================================
BSNT_03682___ 1 TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTT 50
||.||||||||
BL01569___com 1 ---------------------------------------TTGGAAAGTTT 11
BSNT_03682___ 51 ----------------GCTTGTGTTAAGCCTTGCCTCTATCCTCCTGATT 84
|.||.|.|||.| || |||| ||.||..||
BL01569___com 12 AACTGTATTGATGATCGGTTCTATTATG--TT--CTCT---CTTCTCTTT 54
BSNT_03682___ 85 GCCGTCTTCACCACACTTCCTCCTGCTTATGACAA--------TACAGC- 125
|| ||| |||.|||||...||||||.|| |.||||
BL01569___com 55 GC--TCT-------ACTGCCTCCCATTTATGAAAAAAGAATCGTTCAGCA 95
BSNT_03682___ 126 ---TGTCCGACAGGCAGCAAGGCAGCTGAAAAATGAT----ATTATGCTC 168
||||..| |||||..||.|.||| .|||.|||
BL01569___com 96 CTTTGTCTCA------------CAGCTTGAAGAGGATTTGCTTTACGCT- 132
BSNT_03682___ 169 ACACAGCAGACTGCTATTTCCCGTCA-ACAAAGAACAA-----AAATTCT 212
||||||||.|||.|...|||.|| ||.|.|...|| |..||..
BL01569___com 133 ---CAGCAGACGGCTCTCGTCCGCCATACGACGGTTAAGGTGCAGTTTGA 179
BSNT_03682___ 213 CTTTCATAAAAAAG-----------AATATCAATTAGTCATTGGTGA--T 249
|||| | .||||| ||.|..||||.| || .
BL01569___com 180 CTTT---------GCCGGCTGCCGCTATATC-ATGAAGCATTCG-GACGA 218
BSNT_03682___ 250 ACGGTCAT----TGAAC--GTCCGTATGCAACGGGACTTTCTATAGAACT 293
|.|.|||| ||||| || |.|||| |||.|.||
BL01569___com 219 AGGCTCATCGCCTGAACTGGT----------CAGGAC-----ATACAGCT 253
BSNT_03682___ 294 GC----TGACATT--AAAAG-----------ACCGTTTGGAA--TTTAAT 324
|| |..||.| ||||| |||..||...| ||||||
BL01569___com 254 GCAATATCGCAATCAAAAAGTCGACGCTCAAACCAATTCTTACTTTTAAT 303
BSNT_03682___ 325 GAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAG-----TA-AAAGG 368
...|..||....||||||..|||.|||||.|| ||.| || |.||
BL01569___com 304 CCAAGCGGTGTTCCGAATCAAGGGGGAAAGAT-CGTGATCGATACACAG- 351
BSNT_03682___ 369 CCATGC--CGTTTATGACATAACAGTTTATCTAGGGAGCGGGAGAG-TCA 415
||||| |.||||| || |.||..|.|||.||||.||| |||.|| |.|
BL01569___com 352 -CATGCCTCTTTTAT-AC-TGACGATCTATTTAGGAAGC-GGAAAGATTA 397
BSNT_03682___ 416 ATGTGGAGAGAAAATAA 432
||||..|.|.|||||||
BL01569___com 398 ATGTTCAAAAAAAATAA 414
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