Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03672 and BL01564

See Amino acid alignment / Visit BSNT_03672 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_03672___sipW.1.5803.seq
#    -bsequence dna-align/BL01564___sipW.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03672___sipW-BL01564___sipW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03672___sipW-BL01564___sipW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03672___sipW
# 2: BL01564___sipW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity:     390/631 (61.8%)
# Similarity:   390/631 (61.8%)
# Gaps:         104/631 (16.5%)
# Score: 1090.0
# 
#
#=======================================

BSNT_03672___      1 ------------ATGAAGCTGATCAGTAATATTTTATACGTGATCATCTT     38
                                 |||||...||||||.|||.|.|||||.|||||.||.||
BL01564___sip      1 ATGAAACATGTGATGAAATGGATCAGCAATTTCTTATATGTGATTATTTT     50

BSNT_03672___     39 TACTCTTATTATTG-TGCTGACACTTGTCGTGATTTCAACACGTTCATCC     87
                     .||..|.||.||.| .||.|.|| |.|||||||||||.|||...||.|||
BL01564___sip     51 CACAATCATCATCGCCGCGGTCA-TCGTCGTGATTTCGACAAAGTCGTCC     99

BSNT_03672___     88 GGGGGAGAGCCG--GCTGTGTTTGGGTATACATTGAAATCAGTTCTGTCA    135
                     ||.||.||||||  ||  |.||.||.|||..|||||||.|.|||.|.||.
BL01564___sip    100 GGCGGGGAGCCGCAGC--TCTTCGGCTATCAATTGAAAACGGTTTTATCC    147

BSNT_03672___    136 GGTTCGATGGAGCCGGAGTTCAATACAGGTTCCTTAATATT---GGTCAA    182
                     ||.|||||||||||||||||.||.||||||||  |...|||   |.||||
BL01564___sip    148 GGATCGATGGAGCCGGAGTTTAAAACAGGTTC--TGTGATTGCCGTTCAA    195

BSNT_03672___    183 A------GAAATCGCTGATGTGAAAGAGCTTCAAAAA-GGTGACGTTATT    225
                     |      .|||||.|.|.|.|        ||.||||| ||.||..|.|||
BL01564___sip    196 AAAGTTGAAAATCCCGGGTCT--------TTGAAAAAGGGAGATATCATT    237

BSNT_03672___    226 ACATTTATGCAGGATGCAAATACGGCGGTCACCCACAGAATTGTTGACAT    275
                     |||||.|||||.||.|.|||.||...|||.||||||.|||||.|.|..||
BL01564___sip    238 ACATTCATGCAAGACGAAAACACCATGGTTACCCACCGAATTATCGGTAT    287

BSNT_03672___    276 AACAAAGCAAGGAGACC--ATTTGTTATTTAAAACAAAAGGTGATAATAA    323
                     ||||||  ||..|.|.|  ||.|..|.||.||.|||||.|||||.|||||
BL01564___sip    288 AACAAA--AAATAAATCAAATCTCATGTTCAAGACAAAGGGTGACAATAA    335

BSNT_03672___    324 TGCAGCA-GCTGATTCAGCGCCTGTATCGGACGAAAATGTTCGCGCGCAA    372
                      .||..| .|||||||.|..||.|||..||..|||||||||..|||..|.
BL01564___sip    336 -CCAAAACCCTGATTCCGATCCGGTACTGGCGGAAAATGTTGTCGCTAAG    384

BSNT_03672___    373 TACACAGGTTTTCAGCTTCCATATGCAGGCTATATGCTTCATTTTGCCAG    422
                     ||..|.||..||..|.||||.|||||.||.|||.||||..|.|||||.||
BL01564___sip    385 TATTCGGGCATTACGGTTCCGTATGCCGGGTATTTGCTGGACTTTGCAAG    434

BSNT_03672___    423 CCAGCCGATTGGAACGGCTGTATTATTGATTGTTCCCGG-----------    461
                     ..|.|||||.||.||.||..|.||..||||.||.||.||           
BL01564___sip    435 TAAACCGATCGGCACAGCCATTTTGCTGATCGTGCCGGGACTCTTGTTGA    484

BSNT_03672___    462 --CGTGATGCTG---TTAGTGTACGCTTTTGTGACGATCAGCAGCGCCAT    506
                       |.|.||||.|   |||.|||              |||.||.||    |
BL01564___sip    485 TTCTTTATGCAGTAATTACTGT--------------ATCCGCGGC----T    516

BSNT_03672___    507 T--AGAGAAATTG-----AAAG--AAAGACAA---AAGCC-TTGGAAACA    543
                     |  |||||.||||     ||||  |||| |||   ||||| .|||||| |
BL01564___sip    517 TTAAGAGAGATTGACCAAAAAGCTAAAG-CAATTGAAGCCGCTGGAAA-A    564

BSNT_03672___    544 GATACAAAGGACAG-CACCATGTCTACTTAA    573
                     ||| |||   .||| ..|||||      |||
BL01564___sip    565 GAT-CAA---TCAGTTTCCATG------TAA    585


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