Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03672 and BL01564
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_03672___sipW.1.5803.seq
# -bsequence dna-align/BL01564___sipW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03672___sipW-BL01564___sipW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03672___sipW-BL01564___sipW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03672___sipW
# 2: BL01564___sipW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity: 390/631 (61.8%)
# Similarity: 390/631 (61.8%)
# Gaps: 104/631 (16.5%)
# Score: 1090.0
#
#
#=======================================
BSNT_03672___ 1 ------------ATGAAGCTGATCAGTAATATTTTATACGTGATCATCTT 38
|||||...||||||.|||.|.|||||.|||||.||.||
BL01564___sip 1 ATGAAACATGTGATGAAATGGATCAGCAATTTCTTATATGTGATTATTTT 50
BSNT_03672___ 39 TACTCTTATTATTG-TGCTGACACTTGTCGTGATTTCAACACGTTCATCC 87
.||..|.||.||.| .||.|.|| |.|||||||||||.|||...||.|||
BL01564___sip 51 CACAATCATCATCGCCGCGGTCA-TCGTCGTGATTTCGACAAAGTCGTCC 99
BSNT_03672___ 88 GGGGGAGAGCCG--GCTGTGTTTGGGTATACATTGAAATCAGTTCTGTCA 135
||.||.|||||| || |.||.||.|||..|||||||.|.|||.|.||.
BL01564___sip 100 GGCGGGGAGCCGCAGC--TCTTCGGCTATCAATTGAAAACGGTTTTATCC 147
BSNT_03672___ 136 GGTTCGATGGAGCCGGAGTTCAATACAGGTTCCTTAATATT---GGTCAA 182
||.|||||||||||||||||.||.|||||||| |...||| |.||||
BL01564___sip 148 GGATCGATGGAGCCGGAGTTTAAAACAGGTTC--TGTGATTGCCGTTCAA 195
BSNT_03672___ 183 A------GAAATCGCTGATGTGAAAGAGCTTCAAAAA-GGTGACGTTATT 225
| .|||||.|.|.|.| ||.||||| ||.||..|.|||
BL01564___sip 196 AAAGTTGAAAATCCCGGGTCT--------TTGAAAAAGGGAGATATCATT 237
BSNT_03672___ 226 ACATTTATGCAGGATGCAAATACGGCGGTCACCCACAGAATTGTTGACAT 275
|||||.|||||.||.|.|||.||...|||.||||||.|||||.|.|..||
BL01564___sip 238 ACATTCATGCAAGACGAAAACACCATGGTTACCCACCGAATTATCGGTAT 287
BSNT_03672___ 276 AACAAAGCAAGGAGACC--ATTTGTTATTTAAAACAAAAGGTGATAATAA 323
|||||| ||..|.|.| ||.|..|.||.||.|||||.|||||.|||||
BL01564___sip 288 AACAAA--AAATAAATCAAATCTCATGTTCAAGACAAAGGGTGACAATAA 335
BSNT_03672___ 324 TGCAGCA-GCTGATTCAGCGCCTGTATCGGACGAAAATGTTCGCGCGCAA 372
.||..| .|||||||.|..||.|||..||..|||||||||..|||..|.
BL01564___sip 336 -CCAAAACCCTGATTCCGATCCGGTACTGGCGGAAAATGTTGTCGCTAAG 384
BSNT_03672___ 373 TACACAGGTTTTCAGCTTCCATATGCAGGCTATATGCTTCATTTTGCCAG 422
||..|.||..||..|.||||.|||||.||.|||.||||..|.|||||.||
BL01564___sip 385 TATTCGGGCATTACGGTTCCGTATGCCGGGTATTTGCTGGACTTTGCAAG 434
BSNT_03672___ 423 CCAGCCGATTGGAACGGCTGTATTATTGATTGTTCCCGG----------- 461
..|.|||||.||.||.||..|.||..||||.||.||.||
BL01564___sip 435 TAAACCGATCGGCACAGCCATTTTGCTGATCGTGCCGGGACTCTTGTTGA 484
BSNT_03672___ 462 --CGTGATGCTG---TTAGTGTACGCTTTTGTGACGATCAGCAGCGCCAT 506
|.|.||||.| |||.||| |||.||.|| |
BL01564___sip 485 TTCTTTATGCAGTAATTACTGT--------------ATCCGCGGC----T 516
BSNT_03672___ 507 T--AGAGAAATTG-----AAAG--AAAGACAA---AAGCC-TTGGAAACA 543
| |||||.|||| |||| |||| ||| ||||| .|||||| |
BL01564___sip 517 TTAAGAGAGATTGACCAAAAAGCTAAAG-CAATTGAAGCCGCTGGAAA-A 564
BSNT_03672___ 544 GATACAAAGGACAG-CACCATGTCTACTTAA 573
||| ||| .||| ..||||| |||
BL01564___sip 565 GAT-CAA---TCAGTTTCCATG------TAA 585
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