Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00529 and BL01558

See Amino acid alignment / Visit BSNT_00529 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_00529___opuAB.1.5803.seq
#    -bsequence dna-align/BL01558___opuAB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00529___opuAB-BL01558___opuAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00529___opuAB-BL01558___opuAB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00529___opuAB
# 2: BL01558___opuAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 870
# Identity:     638/870 (73.3%)
# Similarity:   638/870 (73.3%)
# Gaps:          36/870 ( 4.1%)
# Score: 2281.0
# 
#
#=======================================

BSNT_00529___      1 --------------ATGGATAGACTGCCTAGAATACCTTTAGCAGATATC     36
                                   ||.|     ||.||..|.||.||||||||.|||...
BL01558___opu      1 ATGTTTACTTTATCATCG-----CTTCCCCGCATTCCTTTAGCCGATTGG     45

BSNT_00529___     37 ATTGACCGTTTTGTTGACTGGATTACGATGACGTTTGGCGGATTCTTCGA     86
                     ||.||.|..||||||||||||.|.|||.||.||||.|||||..|.||..|
BL01558___opu     46 ATCGATCAGTTTGTTGACTGGCTGACGGTGTCGTTCGGCGGTGTATTTAA     95

BSNT_00529___     87 CGGAATCGCTAACGGATTGGCCGCTTTTGTAAATGGAATTGTCACCGGTC    136
                     ||||||.||.|.||||.|||...|.|||||..|||..||||||...||.|
BL01558___opu     96 CGGAATTGCCAGCGGAGTGGAATCGTTTGTTGATGAGATTGTCCAAGGGC    145

BSNT_00529___    137 TTGGATTTATTCCATCTATTTTGTTAACGATTATTTTCGCCGCACTTGCG    186
                     |.||.|||.||||..|..||.||||.||..|||||||.|||||.||.|..
BL01558___opu    146 TGGGTTTTGTTCCGCCGGTTATGTTGACCGTTATTTTTGCCGCGCTCGTC    195

BSNT_00529___    187 TGGTGGATCAGTACAAGGGGAATTGCGTTATTTACGTTGATTGGATTCCT    236
                     |||..||||||.|.|||.||.||||||.|.|||||.||.||.|||||..|
BL01558___opu    196 TGGCTGATCAGCAAAAGAGGCATTGCGCTGTTTACTTTAATCGGATTTTT    245

BSNT_00529___    237 CCTGATCGATTATTTAGGTTATTGGGACCCAATGCTGCAAACATTGGCGC    286
                     ..|.||.|||||||||||.|||||||||.|.|||||.||.||||||||||
BL01558___opu    246 TATCATTGATTATTTAGGATATTGGGACGCCATGCTCCAGACATTGGCGC    295

BSNT_00529___    287 TTGTGTTGACATCTGTGATTATTTCGATTGTGGTCGGGGTTCCGATCGGA    336
                     ||||..|.|||||.||..|.|||||..|..|..||||..|||||.|||||
BL01558___opu    296 TTGTCGTCACATCCGTTCTGATTTCTGTCATTATCGGCATTCCGGTCGGA    345

BSNT_00529___    337 ATTTGGGCGTCTCAGAAAG-AAACGGTTCGCCGTATTGTAACGCCAATTC    385
                     ||.||||..||.|| |||| ||||||||||..|..|.||.|||||.||.|
BL01558___opu    346 ATCTGGGGCTCCCA-AAAGAAAACGGTTCGGAGAGTCGTTACGCCCATCC    394

BSNT_00529___    386 TTGATTTAATGCAGACAATGCCTGCTTTCGTATATCTATTGCCGGCGATT    435
                     ||||.|||||||||||||||||.||.|||||.|||.||.|.|||||.||.
BL01558___opu    395 TTGACTTAATGCAGACAATGCCGGCATTCGTTTATTTACTTCCGGCCATC    444

BSNT_00529___    436 TTCTTCTTTAACATCGGTGTTGTGCCGGGTGTTGTTGCATCTGTTATCTT    485
                     |||||.||.||.|||||.|||||||||||||||||.||.||.||||||||
BL01558___opu    445 TTCTTTTTCAATATCGGGGTTGTGCCGGGTGTTGTCGCTTCCGTTATCTT    494

BSNT_00529___    486 CGCGATGCCGCCGACAATCCGCATGACTGTTC-TCGGTATTAAACAAGTG    534
                     .||||||||.|||||||||||.||||| |.|| |.||.||..|.||.|||
BL01558___opu    495 TGCGATGCCTCCGACAATCCGGATGAC-GATCTTAGGGATCCAGCAGGTG    543

BSNT_00529___    535 CCGGCGGATCTGATTGAAGCAACTGAGGCATTCGGTTCTACAAC-AGCTC    583
                     ||.|..||||||||||||||.||.||.|||||.|||||.||.|| ||| |
BL01558___opu    544 CCTGAAGATCTGATTGAAGCTACAGAAGCATTTGGTTCAACGACAAGC-C    592

BSNT_00529___    584 AGCGTTTGTTTAAAGTTCAGCTTCCGCTTGCGACAAAAACGATTTTGGCC    633
                     ||||..|.||||||||.|||||.|||||.|||||.|||||.|||.|||||
BL01558___opu    593 AGCGGCTCTTTAAAGTGCAGCTGCCGCTCGCGACGAAAACCATTCTGGCC    642

BSNT_00529___    634 GGAATTAACCAGAGCATCATGCTTGCGTTATCAATGGTTGTTATCGCCGC    683
                     ||.||.||.||.||||||||||||||.||.||||||||.|||||.||..|
BL01558___opu    643 GGTATCAATCAAAGCATCATGCTTGCTTTGTCAATGGTCGTTATTGCATC    692

BSNT_00529___    684 AATGGTCGGTGCACCGGGACTTGGTTCTGAAGTATACAGTGCCGTTACAC    733
                     ||||||.||.||.||.|||||.||....|||||.|||.|.||.||.||.|
BL01558___opu    693 AATGGTAGGCGCGCCCGGACTCGGAGAAGAAGTTTACCGGGCTGTGACCC    742

BSNT_00529___    734 AGCTGAAAACCGGGGT--CGGAGTAGAGGCCGGTATCGCCATCGTTATCG    781
                     |||||.||||  ||||  |||.|||||..||||..|.||.||.|||||..
BL01558___opu    743 AGCTGCAAAC--GGGTACCGGTGTAGAAACCGGACTTGCGATTGTTATTA    790

BSNT_00529___    782 TTGCCATTACG--CTGGACCGTATTACTCAAAATATTAAAGTGAAGAAGA    829
                     ||||.||  ||  ||.|||||..||||.||||||||.|||.||||.||| 
BL01558___opu    791 TTGCGAT--CGTACTTGACCGGGTTACACAAAATATAAAATTGAAAAAG-    837

BSNT_00529___    830 AAAGCAGGGGGAATGCCTGA    849
                       ||||||||||||||.|.|
BL01558___opu    838 --AGCAGGGGGAATGCATAA    855


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00529 and BL01558

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
