Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03660 and BL01548

See Amino acid alignment / Visit BSNT_03660 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence dna-align/BSNT_03660___yqhM.1.5803.seq
#    -bsequence dna-align/BL01548___yqhM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03660___yqhM-BL01548___yqhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03660___yqhM-BL01548___yqhM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03660___yqhM
# 2: BL01548___yqhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity:     636/854 (74.5%)
# Similarity:   636/854 (74.5%)
# Gaps:          34/854 ( 4.0%)
# Score: 2303.5
# 
#
#=======================================

BSNT_03660___      1 ATGCAAAAAGAAACTTGGCGGTTTATAGACTCAGG-CAATGCAAGTCCTG     49
                     |||.||||||||||.|||||.|||||.||.||.|| |.|.|..| |||.|
BL01548___yqh      1 ATGGAAAAAGAAACATGGCGTTTTATCGATTCGGGACGACGGGA-TCCCG     49

BSNT_03660___     50 CATTCAATATGGCGCTTGATGAAGCGCTTTTATATTGGCACAGCGAAAAG     99
                     |.||.|||||||||||.||.||.|||||..|.|.|||||||||||||||.
BL01548___yqh     50 CTTTTAATATGGCGCTCGACGAGGCGCTCCTTTTTTGGCACAGCGAAAAT     99

BSNT_03660___    100 AAAATCCCCCCGGTTATCCGTTTTTACGGCTGGAATCCGGCGACACTTTC    149
                     ||.||.||.|||...|||||.||||||||||||||||||.|.||.|||||
BL01548___yqh    100 AAGATTCCGCCGACCATCCGCTTTTACGGCTGGAATCCGCCAACGCTTTC    149

BSNT_03660___    150 TGTAGGGTATTTTCAAAATATTAAAAAGGAAATCAATTTTGAAGCAGTAC    199
                     .||.||.|||||.||||||||..||||||||||||||.|.||.||.||..
BL01548___yqh    150 AGTCGGCTATTTCCAAAATATCGAAAAGGAAATCAATCTGGATGCCGTCA    199

BSNT_03660___    200 ATAAATATAATCTCGGATTCGTCAGACGCCCGACCGGCGGGAGAGGTGTG    249
                     |.|||.|...|.|.||.||.||.|||.|.||||||||.||.|||||.|||
BL01548___yqh    200 AAAAACACGGTTTGGGCTTTGTGAGAAGGCCGACCGGAGGAAGAGGCGTG    249

BSNT_03660___    250 CTTCACGATCAGGAACTGACATACAGCGTAATTGTTTCGGAAGAGCACCC    299
                     |||||.||.||.||.|||||.||||||||.|||||.||.|||||.|||||
BL01548___yqh    250 CTTCATGACCAAGAGCTGACCTACAGCGTCATTGTGTCTGAAGAACACCC    299

BSNT_03660___    300 CGAGATGCCGGCGACTGTTACTGAGGCTTACCGGGTTATTTCAGAAGGCA    349
                     .||.||||||..|||.||.||.||.||.|||||.||.||.||.|||||.|
BL01548___yqh    300 GGAAATGCCGAAGACGGTGACGGAAGCGTACCGCGTCATCTCTGAAGGTA    349

BSNT_03660___    350 TACTTCAAGGCTTTAGAAATCTCGGTCTGGACGCTTACTTTGCCATCCCG    399
                     |.|||.|||||||.|||.|.||.|..||.||.||.||.||.|||||.|||
BL01548___yqh    350 TTCTTGAAGGCTTCAGAGAGCTGGAGCTTGATGCGTATTTCGCCATACCG    399

BSNT_03660___    400 AGAACTGAAAAAGAAAAAGAAAGCTTAAAAAATCCGCGGTCATCTGTTTG    449
                     |||||.||||||||.|||.|.||..|.|||||.|||.|.||.||.||.||
BL01548___yqh    400 AGAACGGAAAAAGAGAAACAGAGTCTGAAAAACCCGAGATCTTCCGTCTG    449

BSNT_03660___    450 TTTTGACGCGCCTTCGTGGTATGAGCTAGTGGTTGAGGGGCGCAAGGTGG    499
                     .||||||||.||.||||||||.|||||.||.||.||.||..|.|||||.|
BL01548___yqh    450 CTTTGACGCCCCGTCGTGGTACGAGCTCGTTGTCGAAGGCAGAAAGGTCG    499

BSNT_03660___    500 CGGGAAGCGCGCAAACGAGACAAAAAGGCGTGATTCTTCAGCATGGCTCC    549
                     |.||||||||.||.||.||.||.|||||.||.|||||||||||.||.||.
BL01548___yqh    500 CAGGAAGCGCCCAGACAAGGCAGAAAGGAGTCATTCTTCAGCACGGTTCG    549

BSNT_03660___    550 ATTCTTCTTGATTTAGATGAGGACAAGCTGTTCGATCTGTTCTTATATCC    599
                     ||.|||||||||.|.||||||||||||||.||.|||.|||  ||||.|.|
BL01548___yqh    550 ATCCTTCTTGATCTGGATGAGGACAAGCTCTTTGATTTGT--TTATTTAC    597

BSNT_03660___    600 --AAGTGAAAGAGTAAGAGAGCGGATGCAGCGCAATTTCAAAAACAAAGC    647
                       ||.|||..|..|.||||||||.||||||.|.||.||||||.|.|||||
BL01548___yqh    598 AAAAATGACCGCCTCAGAGAGCGCATGCAGAGAAACTTCAAACAAAAAGC    647

BSNT_03660___    648 GGTTGCCATTAATGAACTCAC---CGAAAAGCGGGTGACGATGGATGAGG    694
                     |||.|||||.|||||.||.||   .|||||   .||.|||||.||.||.|
BL01548___yqh    648 GGTCGCCATCAATGAGCTGACGAAAGAAAA---AGTCACGATTGAAGAAG    694

BSNT_03660___    695 CTCGTAAAGCCTTTAAAGAAGGATTTGAAACAGGTCTTAACATTCATTTG    744
                     |..|..||||.||||||.||||.|||||||.|||.|||||||||||||||
BL01548___yqh    695 CGAGCGAAGCTTTTAAAAAAGGGTTTGAAAAAGGGCTTAACATTCATTTG    744

BSNT_03660___    745 GAGCCATATGAACTTTCTCAGGAAGAG----CTTGG-TTTTGT------T    783
                     |||||.||||||||..|   |||||||    |  || .|||||      |
BL01548___yqh    745 GAGCCTTATGAACTGAC---GGAAGAGGAAAC--GGAATTTGTCGAAGAT    789

BSNT_03660___    784 CATCACTTGGCTGAAACAAAGTACGCTTCAGATGAATGGAATTATAAGCG    833
                     | ||.|..||     ||.|||||.||..||||||||||||||||||...|
BL01548___yqh    790 C-TCGCCAGG-----ACGAAGTATGCGACAGATGAATGGAATTATAGAAG    833

BSNT_03660___    834 GTAA    837
                     ||||
BL01548___yqh    834 GTAA    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03660 and BL01548

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
