Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03643 and BL01536

See Amino acid alignment / Visit BSNT_03643 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_03643___spoIIIAE.1.5803.seq
#    -bsequence dna-align/BL01536___spoIIIAE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03643___spoIIIAE-BL01536___spoIIIAE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03643___spoIIIAE-BL01536___spoIIIAE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03643___spoIIIAE
# 2: BL01536___spoIIIAE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1240
# Identity:     905/1240 (73.0%)
# Similarity:   905/1240 (73.0%)
# Gaps:          74/1240 ( 6.0%)
# Score: 3302.0
# 
#
#=======================================

BSNT_03643___      1 TTGAAGCGCTTTCAATGGGTTTTGCTTTTGGC-CGTGCTGATC---ATAG     46
                     .|||||||.||||         || ||.|||| |.||.|.|||   ||.|
BL01536___spo      1 GTGAAGCGTTTTC---------TG-TTCTGGCTCTTGGTCATCGGAATCG     40

BSNT_03643___     47 CAGGCCGTGCAG---AAATTGTACAAG---------------------CA     72
                     .|.||..||.||   |.|.||||||||                     |.
BL01536___spo     41 TATGCTTTGGAGCGCATAATGTACAAGCTTCGCCAAAAGAAGCGGAGCCG     90

BSNT_03643___     73 GCTGGTAA------TGCAGAACAAACGGAAGACCATGCTGAAACAGCCGA    116
                     |||||..|      |||||||.||.|||.|||                 |
BL01536___spo     91 GCTGGGGAAACCGCTGCAGAAGAATCGGCAGA-----------------A    123

BSNT_03643___    117 GCAATTAGCGGAAAGGACAGCAGCCT---CGCTTGAAAC-AGATAAGATC    162
                     ||.||| ||    |.||.|||||.||   .|.|||.||| |||...|.||
BL01536___spo    124 GCCATT-GC----AAGAGAGCAGGCTGAAGGTTTGGAACTAGACCGGGTC    168

BSNT_03643___    163 GGAGAATTTTGGAATGACATTATGACAGAATACGGCGGACTGCTGCCGGA    212
                     ||.||.||.|||||..|||||.|||||||.||.||.||||..||.||.||
BL01536___spo    169 GGGGAGTTCTGGAACAACATTTTGACAGAGTATGGGGGACACCTTCCCGA    218

BSNT_03643___    213 AAGCCAAAAAGGCAGCTTAATGGAGTTTATCAATGGCGATAAATCA-TTC    261
                     |||.||||||||.|||.|..|.||.|||.||||.||.|| |||.|| ||.
BL01536___spo    219 AAGTCAAAAAGGAAGCCTGCTTGAATTTGTCAAAGGAGA-AAAGCACTTT    267

BSNT_03643___    262 TCACCGCAAGAATGGCTGAAAGCTCTCTTTTCTTATTTGTTTCATGAAGT    311
                     ||.||..|.||||||...|||||.||.|||||.||.|||||.||||||||
BL01536___spo    268 TCGCCTGAGGAATGGGGCAAAGCGCTGTTTTCCTACTTGTTCCATGAAGT    317

BSNT_03643___    312 GCTTGCCAACGGAAAGCTGCTGGGCACATTGATTTTGCTCACGATTTTTT    361
                     |||.||.|||||.||.||||||||.||..||||..||.|.||.||.||.|
BL01536___spo    318 GCTGGCTAACGGGAAACTGCTGGGGACGCTGATCCTGTTGACCATCTTCT    367

BSNT_03643___    362 GCGTCATTCTGCAGCTTTTGCAAAATGCGTTTCAGCAAAGCACCGTCAGT    411
                     |||||.|.||.||||||||||||||.||||||||.||||||||||||||.
BL01536___spo    368 GCGTCCTGCTTCAGCTTTTGCAAAACGCGTTTCAACAAAGCACCGTCAGC    417

BSNT_03643___    412 AAGGTCGCTTACTCAATTGTGTACATGGTGCTGATTATCCTTGCGCTTAA    461
                     ||.||.||.||..|||||||.|||||||||||||||||.||||||||.||
BL01536___spo    418 AAAGTGGCGTATGCAATTGTCTACATGGTGCTGATTATTCTTGCGCTCAA    467

BSNT_03643___    462 TAGCTTTCATGTGGCAATTAACTATGCAACTGAGGCGATTCAGACGATGA    511
                     .|||||||..||.||..|.|..|||||.|.|||.||||||||||||||||
BL01536___spo    468 CAGCTTTCGGGTTGCCGTCACATATGCGAATGAAGCGATTCAGACGATGA    517

BSNT_03643___    512 CCAGCTTTATCCTGGCGCTCATTCCGCTCCTCTTGGCGCTTTTGGCTTCC    561
                     |.||||||||||||.|||||.|.||.||.||..|||||||..||||..|.
BL01536___spo    518 CAAGCTTTATCCTGTCGCTCGTACCTCTGCTTCTGGCGCTGATGGCGACT    567

BSNT_03643___    562 TCAGGCGGAGCTGTATCTGCTGCCTTCTTTCATCCTGTTATCCTCTTCCT    611
                     ||.||.|||||.|..||.||.||.|||||||||||.||.||.||.||.||
BL01536___spo    568 TCGGGGGGAGCCGCCTCAGCCGCATTCTTTCATCCGGTCATTCTTTTTCT    617

BSNT_03643___    612 GATGAACACGAGCGGTCTCTTGATTCAGAATATCGTCATGCCGCTGATTT    661
                     .||||||||||||||..|.||.||.||..|||||||..|||||||..|.|
BL01536___spo    618 CATGAACACGAGCGGCTTGTTTATCCAATATATCGTGTTGCCGCTTTTAT    667

BSNT_03643___    662 TTTTATCAGCGATTCTGAGCATTGTCAGCACGATGACTGAACAATACAAA    711
                     ||||||||||||||.|.||||||||||||||||||||.||.|||||.|||
BL01536___spo    668 TTTTATCAGCGATTTTAAGCATTGTCAGCACGATGACGGACCAATATAAA    717

BSNT_03643___    712 GTAACGCAGCTGGCTAACCTGCTCAGAAATATCGCCATCGGAGCGCTGGC    761
                     ||.||.||||||||..|.||.|||||||||...||.|||||..|||||||
BL01536___spo    718 GTCACACAGCTGGCCCAGCTCCTCAGAAATGCGGCGATCGGCACGCTGGC    767

BSNT_03643___    762 TGTTTTTCTTACCATCTTTCTCGGCGTCATCTCTGTTCAGGGAGCCTCGG    811
                     ||..|||.|.|||.|.||.|||||.||||||||.||||||||.|||||.|
BL01536___spo    768 TGCATTTTTGACCGTATTCCTCGGTGTCATCTCGGTTCAGGGCGCCTCAG    817

BSNT_03643___    812 CTGCAGTGACAGACGGCATTACGCTCAGGACGGCTAAATTTATAACCGGA    861
                     |.||||||||.|||||||||||..|..|||||||.|||||.||.||||||
BL01536___spo    818 CCGCAGTGACGGACGGCATTACTTTGCGGACGGCAAAATTCATTACCGGA    867

BSNT_03643___    862 AATTTTATTCCTGTGCTTGGCCGAATGTTTACAGACGCAACAGATACAGT    911
                     ||.||.||.||.||..|.|||||.||||||||.||.||.|||||.||.||
BL01536___spo    868 AACTTCATCCCCGTATTGGGCCGCATGTTTACCGAAGCGACAGACACGGT    917

BSNT_03643___    912 AATCAGCGCCTCTTTACTGCTGAAAAATACGGTAGGGATTCTCGGTGTCG    961
                     .||||||||.|||.|.|||||||||||.||.||.|||||.||||||||.|
BL01536___spo    918 GATCAGCGCGTCTCTCCTGCTGAAAAACACCGTCGGGATACTCGGTGTGG    967

BSNT_03643___    962 CTATTTTGATCTGTATTGCGGCATTTCCGGCAATCAAAGTGCTTTCCCTC   1011
                     |.||.||.||.||.||.||.||.|||||.||.||||||.|.|||||||||
BL01536___spo    968 CAATCTTAATTTGCATCGCAGCCTTTCCCGCGATCAAAATCCTTTCCCTC   1017

BSNT_03643___   1012 GCTTTTATTTATAAGCTGGCAGCCGCGATTCTTCAGCCACTAGGAGGCGG   1061
                     ||..|.||.||.||..|.||.||.|||.||||.|||||.||.||||||||
BL01536___spo   1018 GCGCTCATATACAAAATTGCCGCGGCGGTTCTCCAGCCTCTCGGAGGCGG   1067

BSNT_03643___   1062 GCCCGTCATCACCTGCCTCGACGTCATCAGCAAAAGCGTCATTTATATTT   1111
                     .||.||.||||.||||||.||.||||||||||||||||||||.||.||||
BL01536___spo   1068 CCCGGTTATCAGCTGCCTGGATGTCATCAGCAAAAGCGTCATCTACATTT   1117

BSNT_03643___   1112 TTGCAGCTCTCGCCATTGTGTCTCTCATGTTTTTTTTAAGCCTTACTGTC   1161
                     |.||.||..|.|||||.||.||.||.||||||||.||||||.|.||.||.
BL01536___spo   1118 TCGCGGCCATGGCCATCGTTTCGCTGATGTTTTTCTTAAGCTTAACCGTG   1167

BSNT_03643___   1162 ATAATCACAGCCGGAAACCTCACGATGATGATGAAATGA-   1200
                     ||.||.|||||.||.||.||.||||||||||||||.| | 
BL01536___spo   1168 ATCATTACAGCGGGGAATCTGACGATGATGATGAAGT-AG   1206


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