Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03643 and BL01536
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_03643___spoIIIAE.1.5803.seq
# -bsequence dna-align/BL01536___spoIIIAE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03643___spoIIIAE-BL01536___spoIIIAE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03643___spoIIIAE-BL01536___spoIIIAE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03643___spoIIIAE
# 2: BL01536___spoIIIAE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1240
# Identity: 905/1240 (73.0%)
# Similarity: 905/1240 (73.0%)
# Gaps: 74/1240 ( 6.0%)
# Score: 3302.0
#
#
#=======================================
BSNT_03643___ 1 TTGAAGCGCTTTCAATGGGTTTTGCTTTTGGC-CGTGCTGATC---ATAG 46
.|||||||.|||| || ||.|||| |.||.|.||| ||.|
BL01536___spo 1 GTGAAGCGTTTTC---------TG-TTCTGGCTCTTGGTCATCGGAATCG 40
BSNT_03643___ 47 CAGGCCGTGCAG---AAATTGTACAAG---------------------CA 72
.|.||..||.|| |.|.|||||||| |.
BL01536___spo 41 TATGCTTTGGAGCGCATAATGTACAAGCTTCGCCAAAAGAAGCGGAGCCG 90
BSNT_03643___ 73 GCTGGTAA------TGCAGAACAAACGGAAGACCATGCTGAAACAGCCGA 116
|||||..| |||||||.||.|||.||| |
BL01536___spo 91 GCTGGGGAAACCGCTGCAGAAGAATCGGCAGA-----------------A 123
BSNT_03643___ 117 GCAATTAGCGGAAAGGACAGCAGCCT---CGCTTGAAAC-AGATAAGATC 162
||.||| || |.||.|||||.|| .|.|||.||| |||...|.||
BL01536___spo 124 GCCATT-GC----AAGAGAGCAGGCTGAAGGTTTGGAACTAGACCGGGTC 168
BSNT_03643___ 163 GGAGAATTTTGGAATGACATTATGACAGAATACGGCGGACTGCTGCCGGA 212
||.||.||.|||||..|||||.|||||||.||.||.||||..||.||.||
BL01536___spo 169 GGGGAGTTCTGGAACAACATTTTGACAGAGTATGGGGGACACCTTCCCGA 218
BSNT_03643___ 213 AAGCCAAAAAGGCAGCTTAATGGAGTTTATCAATGGCGATAAATCA-TTC 261
|||.||||||||.|||.|..|.||.|||.||||.||.|| |||.|| ||.
BL01536___spo 219 AAGTCAAAAAGGAAGCCTGCTTGAATTTGTCAAAGGAGA-AAAGCACTTT 267
BSNT_03643___ 262 TCACCGCAAGAATGGCTGAAAGCTCTCTTTTCTTATTTGTTTCATGAAGT 311
||.||..|.||||||...|||||.||.|||||.||.|||||.||||||||
BL01536___spo 268 TCGCCTGAGGAATGGGGCAAAGCGCTGTTTTCCTACTTGTTCCATGAAGT 317
BSNT_03643___ 312 GCTTGCCAACGGAAAGCTGCTGGGCACATTGATTTTGCTCACGATTTTTT 361
|||.||.|||||.||.||||||||.||..||||..||.|.||.||.||.|
BL01536___spo 318 GCTGGCTAACGGGAAACTGCTGGGGACGCTGATCCTGTTGACCATCTTCT 367
BSNT_03643___ 362 GCGTCATTCTGCAGCTTTTGCAAAATGCGTTTCAGCAAAGCACCGTCAGT 411
|||||.|.||.||||||||||||||.||||||||.||||||||||||||.
BL01536___spo 368 GCGTCCTGCTTCAGCTTTTGCAAAACGCGTTTCAACAAAGCACCGTCAGC 417
BSNT_03643___ 412 AAGGTCGCTTACTCAATTGTGTACATGGTGCTGATTATCCTTGCGCTTAA 461
||.||.||.||..|||||||.|||||||||||||||||.||||||||.||
BL01536___spo 418 AAAGTGGCGTATGCAATTGTCTACATGGTGCTGATTATTCTTGCGCTCAA 467
BSNT_03643___ 462 TAGCTTTCATGTGGCAATTAACTATGCAACTGAGGCGATTCAGACGATGA 511
.|||||||..||.||..|.|..|||||.|.|||.||||||||||||||||
BL01536___spo 468 CAGCTTTCGGGTTGCCGTCACATATGCGAATGAAGCGATTCAGACGATGA 517
BSNT_03643___ 512 CCAGCTTTATCCTGGCGCTCATTCCGCTCCTCTTGGCGCTTTTGGCTTCC 561
|.||||||||||||.|||||.|.||.||.||..|||||||..||||..|.
BL01536___spo 518 CAAGCTTTATCCTGTCGCTCGTACCTCTGCTTCTGGCGCTGATGGCGACT 567
BSNT_03643___ 562 TCAGGCGGAGCTGTATCTGCTGCCTTCTTTCATCCTGTTATCCTCTTCCT 611
||.||.|||||.|..||.||.||.|||||||||||.||.||.||.||.||
BL01536___spo 568 TCGGGGGGAGCCGCCTCAGCCGCATTCTTTCATCCGGTCATTCTTTTTCT 617
BSNT_03643___ 612 GATGAACACGAGCGGTCTCTTGATTCAGAATATCGTCATGCCGCTGATTT 661
.||||||||||||||..|.||.||.||..|||||||..|||||||..|.|
BL01536___spo 618 CATGAACACGAGCGGCTTGTTTATCCAATATATCGTGTTGCCGCTTTTAT 667
BSNT_03643___ 662 TTTTATCAGCGATTCTGAGCATTGTCAGCACGATGACTGAACAATACAAA 711
||||||||||||||.|.||||||||||||||||||||.||.|||||.|||
BL01536___spo 668 TTTTATCAGCGATTTTAAGCATTGTCAGCACGATGACGGACCAATATAAA 717
BSNT_03643___ 712 GTAACGCAGCTGGCTAACCTGCTCAGAAATATCGCCATCGGAGCGCTGGC 761
||.||.||||||||..|.||.|||||||||...||.|||||..|||||||
BL01536___spo 718 GTCACACAGCTGGCCCAGCTCCTCAGAAATGCGGCGATCGGCACGCTGGC 767
BSNT_03643___ 762 TGTTTTTCTTACCATCTTTCTCGGCGTCATCTCTGTTCAGGGAGCCTCGG 811
||..|||.|.|||.|.||.|||||.||||||||.||||||||.|||||.|
BL01536___spo 768 TGCATTTTTGACCGTATTCCTCGGTGTCATCTCGGTTCAGGGCGCCTCAG 817
BSNT_03643___ 812 CTGCAGTGACAGACGGCATTACGCTCAGGACGGCTAAATTTATAACCGGA 861
|.||||||||.|||||||||||..|..|||||||.|||||.||.||||||
BL01536___spo 818 CCGCAGTGACGGACGGCATTACTTTGCGGACGGCAAAATTCATTACCGGA 867
BSNT_03643___ 862 AATTTTATTCCTGTGCTTGGCCGAATGTTTACAGACGCAACAGATACAGT 911
||.||.||.||.||..|.|||||.||||||||.||.||.|||||.||.||
BL01536___spo 868 AACTTCATCCCCGTATTGGGCCGCATGTTTACCGAAGCGACAGACACGGT 917
BSNT_03643___ 912 AATCAGCGCCTCTTTACTGCTGAAAAATACGGTAGGGATTCTCGGTGTCG 961
.||||||||.|||.|.|||||||||||.||.||.|||||.||||||||.|
BL01536___spo 918 GATCAGCGCGTCTCTCCTGCTGAAAAACACCGTCGGGATACTCGGTGTGG 967
BSNT_03643___ 962 CTATTTTGATCTGTATTGCGGCATTTCCGGCAATCAAAGTGCTTTCCCTC 1011
|.||.||.||.||.||.||.||.|||||.||.||||||.|.|||||||||
BL01536___spo 968 CAATCTTAATTTGCATCGCAGCCTTTCCCGCGATCAAAATCCTTTCCCTC 1017
BSNT_03643___ 1012 GCTTTTATTTATAAGCTGGCAGCCGCGATTCTTCAGCCACTAGGAGGCGG 1061
||..|.||.||.||..|.||.||.|||.||||.|||||.||.||||||||
BL01536___spo 1018 GCGCTCATATACAAAATTGCCGCGGCGGTTCTCCAGCCTCTCGGAGGCGG 1067
BSNT_03643___ 1062 GCCCGTCATCACCTGCCTCGACGTCATCAGCAAAAGCGTCATTTATATTT 1111
.||.||.||||.||||||.||.||||||||||||||||||||.||.||||
BL01536___spo 1068 CCCGGTTATCAGCTGCCTGGATGTCATCAGCAAAAGCGTCATCTACATTT 1117
BSNT_03643___ 1112 TTGCAGCTCTCGCCATTGTGTCTCTCATGTTTTTTTTAAGCCTTACTGTC 1161
|.||.||..|.|||||.||.||.||.||||||||.||||||.|.||.||.
BL01536___spo 1118 TCGCGGCCATGGCCATCGTTTCGCTGATGTTTTTCTTAAGCTTAACCGTG 1167
BSNT_03643___ 1162 ATAATCACAGCCGGAAACCTCACGATGATGATGAAATGA- 1200
||.||.|||||.||.||.||.||||||||||||||.| |
BL01536___spo 1168 ATCATTACAGCGGGGAATCTGACGATGATGATGAAGT-AG 1206
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