Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03617 and BL01522
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03617.1.5803.seq
# -bsequence dna-align/BL01522___yqxC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03617-BL01522___yqxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03617-BL01522___yqxC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03617
# 2: BL01522___yqxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 881
# Identity: 545/881 (61.9%)
# Similarity: 545/881 (61.9%)
# Gaps: 187/881 (21.2%)
# Score: 1856.5
#
#
#=======================================
BSNT_03617 0 -------------------------------------------------- 0
BL01522___yqx 1 ATGACAGGAAAAAAAGAACGGCTCGACGTTTTATTAGTAGAAAGAGGGTT 50
BSNT_03617 0 -------------------------------------------------- 0
BL01522___yqx 51 AATGGAAACGCGGGAAAAAGCGAAAAGAGCCATCATGGCCGGCATTGTCT 100
BSNT_03617 1 -----------------TTGGACAAGCCTGGAGAAAAAATTGACCG--CG 31
.||||||||||.||.|||||..|.||||| ||
BL01522___yqx 101 ATACGAATGAAAACAGACTGGACAAGCCGGGCGAAAAGGTCGACCGCACG 150
BSNT_03617 32 ACCTTCCGTTAACCGTTAAAGGAAACCCGCTGAGGTATGTGAGCAGGGGC 81
| |.|||.|.||||||||||||||||||.|.|..||.||....||.|||
BL01522___yqx 151 A--TCCCGCTGACCGTTAAAGGAAACCCGTTAAAATACGTCTCAAGAGGC 198
BSNT_03617 82 GGCTTAAAGCTCGAAAAAGCGTTGAAGGAATTTCCCGTCTCTG-TCAAGG 130
||.|||||.||.||||||||.||.|||||.||||...||||.| ||||||
BL01522___yqx 199 GGATTAAAACTTGAAAAAGCATTAAAGGAGTTTCAGCTCTCCGTTCAAGG 248
BSNT_03617 131 ATAAAATTATGATTGATATTGGCTCCTCCACCGGCGGTTTTACGGACTGC 180
.||..|.||||||||.||.|||||.|||||||||||.|||||.|||||.
BL01522___yqx 249 -CAAGCTGATGATTGACATCGGCTCGTCCACCGGCGGCTTTACAGACTGT 297
BSNT_03617 181 GCTTTGCAAAATGGAGCTAAACAGTCATACGCTGTGGATGTAGGCTATAA 230
||..|||||||.||.|||......|||||.||.||.|||||.||.|||||
BL01522___yqx 298 GCGCTGCAAAACGGCGCTCTTTGCTCATATGCCGTTGATGTCGGTTATAA 347
BSNT_03617 231 TCAGCTTGCGTGGAAGCTCAGACAGGATGAACGGGTCGTCGTGATGGAAC 280
||||||.||.||||||||.||.||||||||.|||||.||.||||||||||
BL01522___yqx 348 TCAGCTCGCCTGGAAGCTGAGGCAGGATGAGCGGGTTGTTGTGATGGAAC 397
BSNT_03617 281 GGACGAACTTTCGTTA-TGCAACACCGGCAGACTTTAC-AAAGGGCATGC 328
|.||.||.||.||.|| ||| |||||.||.||.||||| .|||||| |||
BL01522___yqx 398 GCACCAATTTCCGGTATTGC-ACACCTGCCGATTTTACGGAAGGGC-TGC 445
BSNT_03617 329 CGGAGTTTGCCACAATTGATGTGTCCTTTATTTCACTGCGGCTCATCCTG 378
|||||||.||.||..|.|||||.||.|||||.||||||....|||||||.
BL01522___yqx 446 CGGAGTTCGCGACGGTCGATGTCTCTTTTATCTCACTGAAAATCATCCTC 495
BSNT_03617 379 CCTGTCCT-AAGGAC-TTTGCTCGTACCGGGCAGCGACTGCATGGCTCTA 426
|||||.|| |||.|| ||| |.||.|||||.|||||||||||.|||||.
BL01522___yqx 496 CCTGTGCTGAAGAACATTT--TAGTGCCGGGAAGCGACTGCATCGCTCTC 543
BSNT_03617 427 GTTAAGCCTCAGTTTGAAGCGGGACGGGAATCCGTCGGCAAAAAAGGGAT 476
||.||.||.|||||||||||.||.||||||||||||||.|||||||||||
BL01522___yqx 544 GTCAAACCGCAGTTTGAAGCAGGGCGGGAATCCGTCGGGAAAAAAGGGAT 593
BSNT_03617 477 TGTCAGAGATCC---------TAAA---GTGCATGCTGATGTGCTCA--A 512
.|||.|.||||| |||| ||||.||.||| || |
BL01522___yqx 594 CGTCCGCGATCCCCTCGTCCATAAAGCTGTGCTTGATGA------CATCA 637
BSNT_03617 513 GCGAATGATCAGTTTTTCTGCCGCT---GAAGGCTATATATG------TA 553
|| |.||| |||.||| ||||| |||.| .|
BL01522___yqx 638 GC-------CGGTT----TGCGGCTCGAGAAGG----ATACGACTGCCGA 672
BSNT_03617 554 AAGGCTTGTCATTTTCTCCAATCACTGGAGGAGACGGAAATATTGAGTTT 603
||.|| .||.||||||||.||.||.||.||.|||||.||.||.||.||.
BL01522___yqx 673 AACGC--CTCGTTTTCTCCGATTACCGGCGGCGACGGCAACATCGAATTC 720
BSNT_03617 604 CTCCTTCATTTGCATTGGCCGGGAGAGGGACA----GGATGGCCAGGAGC 649
||.||.||||||||||||...|||||||..|| |||..||| |.
BL01522___yqx 721 CTTCTCCATTTGCATTGGGACGGAGAGGCGCAATCCGGAACGCC----GA 766
BSNT_03617 650 TGCCGGAAGAAGAGATCATGCGCGTTGTAGAAGAAGCACATAAGACGTTA 699
|..||||||||..|||||..|...||||.|||||.||.||.|||||.|||
BL01522___yqx 767 TAGCGGAAGAAACGATCAATCAAATTGTCGAAGAGGCTCACAAGACATTA 816
BSNT_03617 700 AAAGAAAAAAAAGCAGATGTACCG-GAATAA 729
||||..||||||.|.||| .|.|| ||.|||
BL01522___yqx 817 AAAGCGAAAAAACCGGAT-CAGCGTGATTAA 846
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