Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03602 and BL01515

See Amino acid alignment / Visit BSNT_03602 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:36
# Commandline: needle
#    -asequence dna-align/BSNT_03602___yqiH.1.5803.seq
#    -bsequence dna-align/BL01515___yqiH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03602___yqiH-BL01515___yqiH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03602___yqiH-BL01515___yqiH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03602___yqiH
# 2: BL01515___yqiH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity:     185/354 (52.3%)
# Similarity:   185/354 (52.3%)
# Gaps:          90/354 (25.4%)
# Score: 386.5
# 
#
#=======================================

BSNT_03602___      1 ---GTGAAACAAACGG-----TTCTTTTGCTGTTTACTGCGCTCTTTCTT     42
                        ..||||     ||     |.|||.|.|||||..||..|||.||..|.
BL01515___yqi      1 ATGAGGAAA-----GGAGTCATCCTTGTTCTGTTCGCTATGCTGTTATTG     45

BSNT_03602___     43 TCGGGGTGC---------------AGTGTTGCAAGTGCGGATGACTCAGT     77
                     .|.||.|||               |.|| .|||| .|||| ||| |.||.
BL01515___yqi     46 GCAGGCTGCGGCACAACGCAGCATAATG-GGCAA-AGCGG-TGA-TGAGA     91

BSNT_03602___     78 GCC---AAGGTTTACCGAAGAGGGAA------------AATACA------    106
                     |||   ||||  .||.|..||||.||            ||..||      
BL01515___yqi     92 GCCGAAAAGG--AACAGGCGAGGAAACGCTCGTGAAAGAAGGCACCTTTG    139

BSNT_03602___    107 TTGGCTCGGCTGATCCTCATACGATTGCGGTTTCTCTTAATGGAGAAGAA    156
                     |.||.|.|||.||.|..|||||..|.||.||...|.||.|.||..|||||
BL01515___yqi    140 TCGGTTTGGCGGACCAGCATACCGTCGCCGTCAATATTGACGGCAAAGAA    189

BSNT_03602___    157 ACCATGATACAAG----TTCCGAAGGATAAACGTGATGAATGTGAATCAC    202
                     ||.|||.|.||.|    |.|||||    |||||.||..|||.|.||    
BL01515___yqi    190 ACGATGTTTCAGGTCCCTCCCGAA----AAACGGGACAAATATAAA----    231

BSNT_03602___    203 TGCCA-----GATCAGACACATGTCCTGGTGAAATATAC-AAAGAAGGAT    246
                      |..|     |||.|.|||.|.||....|||.|.||.|| ||||.| ||.
BL01515___yqi    232 -GGGATCGAGGATGATACAAAGGTGGAAGTGGAGTACACGAAAGCA-GAG    279

BSNT_03602___    247 AATGGAACTTTACAGCTGGAAGATATTCAGCTGCGAAAGAACTCGTCATA    296
                     .|.|||||.||||||||.|||||||      ||..||||||      |.|
BL01515___yqi    280 GACGGAACATTACAGCTTGAAGATA------TGAAAAAGAA------AGA    317

BSNT_03602___    297 A---    297
                     |   
BL01515___yqi    318 ATGA    321


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