Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03573 and BL01511
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_03573___bmrU.1.5803.seq
# -bsequence dna-align/BL01511___bmrU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03573___bmrU-BL01511___bmrU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03573___bmrU-BL01511___bmrU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03573___bmrU
# 2: BL01511___bmrU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 957
# Identity: 589/957 (61.5%)
# Similarity: 589/957 (61.5%)
# Gaps: 117/957 (12.2%)
# Score: 1553.0
#
#
#=======================================
BSNT_03573___ 1 ATGAGCCACCG---GAAAGCGTTACTGATTCATAACGGAAATGC-CGGCA 46
|||| |||| ||||||..|.||||||.|.|||||.||||| .||||
BL01511___bmr 1 ATGA---ACCGAAAGAAAGCAATGCTGATTTACAACGGGAATGCAGGGCA 47
BSNT_03573___ 47 ACAAAAATATAGAAAAAGCACTTGGTGCTGTCGTGCCGGTTTTATCTCAC 96
| ||||||.|.||||||.||||.|||||||.|||.|||.||.|.||.||.
BL01511___bmr 48 A-AAAAATGTTGAAAAAACACTCGGTGCTGCCGTACCGATTCTTTCACAA 96
BSNT_03573___ 97 CATTTAGATGAGGTGATTATTAAACAGACAAAGAAAAAGGATGATGCGTA 146
..|.||||.||..|.||..|.||||.|||.|..||||||...|||||||
BL01511___bmr 97 GCTATAGACGAACTCATCGTGAAACCGACGAGAAAAAAGCGCGATGCGT- 145
BSNT_03573___ 147 TC-ATTTTTGCC----GATCCATTGATGATTCTGTCGACACCG------T 185
|| |.||||||| |||| |..|| .||.|.|| |
BL01511___bmr 146 TCGAATTTTGCCTGGAGATC----GGGGA------GGATATCGGGCAGTT 185
BSNT_03573___ 186 CTTCATTCTCGGCGGCGACGGCACGATCCATCAATGCATAAATGCTATCA 235
.||.||..|.|||||.|||||.|||.|.|||.|||||||.||.|..||.|
BL01511___bmr 186 GTTTATCTTAGGCGGTGACGGGACGGTGCATGAATGCATTAACGGGATTA 235
BSNT_03573___ 236 GCGCTCTAGAAAGAAAACCCGCGGTCGGAATTTTGCCCGGAGGCACGTGC 285
||...||..|||..||.||.|...||||.||..|.||.||.||.||.|||
BL01511___bmr 236 GCCAGCTTCAAACCAAGCCAGATATCGGCATCCTCCCTGGCGGTACATGC 285
BSNT_03573___ 286 AATGACTTTTCAAGAGTGCTTGGCATCCCTCAAAATCTTGCAAAGGCCGC 335
||.||||||||.||.|.|||..||||.||.||.||..|.|..||.||.||
BL01511___bmr 286 AACGACTTTTCGAGGGCGCTCCGCATTCCCCAGAACATAGAGAAAGCGGC 335
BSNT_03573___ 336 GGAAGCACTTATGGCA--GGAAATAAAACCAG----CGTAGACGTATGTC 379
||||||.|| .|.|| ||||.| ||.| .||.||.|| |.|.
BL01511___bmr 336 GGAAGCGCT--CGCCAATGGAAGT----CCCGTCCCGGTCGATGT-TTTA 378
BSNT_03573___ 380 AGA-TGAATGACCGTTATTTTTTAAATTTCTGGGGGATCGGCTTAATTGC 428
|.| .||||||.|.|||||.|.|.||.||.|||||.|||||.||.||..|
BL01511___bmr 379 AAAGCGAATGATCATTATTGTCTCAACTTTTGGGGCATCGGATTGATCAC 428
BSNT_03573___ 429 AGAAACGTCGAATCAAATCAACGAAACGGAAAAAGCATTATTGGGAAAAA 478
.|||.|.||.|..||.|||||..|||||||||||||..|..|.||.|.||
BL01511___bmr 429 GGAAGCTTCCAGCCATATCAATCAAACGGAAAAAGCGCTGCTCGGGAGAA 478
BSNT_03573___ 479 TCAGCTATTTTACAAGTGCGTTGCGAACCGTCTC--ATC-----CGCTGC 521
||||.|||||||||||.||..||||.||..|||| ||| |.||.|
BL01511___bmr 479 TCAGTTATTTTACAAGCGCACTGCGGACAATCTCCAATCTTGAGCCCTTC 528
BSNT_03573___ 522 ATCGTTTCCGATGACATTAAAAATTGACGGAAAAGAAATTAAAGAAGAAG 571
||.||||...||.| .||.||||||.||||..||...||.||||
BL01511___bmr 529 -TCTTTTCGTCTGTC------GATCGACGGAGAAGAGTTTGCTGACGAAG 571
BSNT_03573___ 572 CCGTTATGCTGCTTGTGATGAATGGCCAATACATTGGAACGAATCGA-AT 620
|.||.|||.|..|.|||.||||.||||..|..||.|||||||| |.| ||
BL01511___bmr 572 CGGTCATGGTCGTCGTGCTGAACGGCCCCTTTATCGGAACGAA-CAAGAT 620
BSNT_03573___ 621 TCCTCTGC--CCGATGCCAGTATTGAAGACGGCTTACTTGATGTTCTCAT 668
.||.||.| |.|.|| ||.||..|.|||||...|...||..|||||.|
BL01511___bmr 621 CCCCCTTCCGCAGCTG--AGCATCAACGACGGAAAAGCGGACATTCTCGT 668
BSNT_03573___ 669 ATGCCGCAACACCAACCTCACCGCGCTGCGGGAGCT----------GATG 708
.|||||.||.||.||.||..|.||..||...||||| ||||
BL01511___bmr 669 CTGCCGGAATACGAATCTGGCTGCATTGAAAGAGCTTTTTGCAATGGATG 718
BSNT_03573___ 709 A----GCATGGAACAGGGCTCAATTGATCGTTTTACCGGAGAGCTGTCCT 754
| |.|||| |||...||||..||.|||||.||||
BL01511___bmr 719 ATCCCGAATGG--------------GATTCCTTTAAAGGCGAGCTATCCT 754
BSNT_03573___ 755 ATGTCCA--GGCCTCCCGTATCGAAATTGAAACAGACACTGCCAAAAAGG 802
||...|| |||...|||| ||| |||||||||.|.|..|.|||...|.|
BL01511___bmr 755 ATTATCAGGGGCAAACCGT-TCG-AATTGAAACCGCCCTTCCCATGGAAG 802
BSNT_03573___ 803 CGGATATGGATGGAGAAGTTTATACACATACACCCGCAGTCATTC-AGGT 851
|.||||..||.||.|||.|.|..|||.|.||.||.|| .|||.|| ||||
BL01511___bmr 803 CCGATACAGACGGCGAAATCTGCACAAAAACGCCGGC-TTCAATCGAGGT 851
BSNT_03573___ 852 CCTGCCGCA-----GCATATCGACATGCTTGTTCCC---GCAAATGGATA 893
.|| | |||..||..||||||....||| |.|||.|.|.|
BL01511___bmr 852 GCT-----AAACGGGCACCTCCGCATGCTCACCCCCTTAGAAAAAGAAAA 896
BSNT_03573___ 894 A------ 894
|
BL01511___bmr 897 AAGCTGA 903
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