Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01126 and BL01493
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_01126___yerB.1.5803.seq
# -bsequence dna-align/BL01493___yerB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01126___yerB-BL01493___yerB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01126___yerB-BL01493___yerB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01126___yerB
# 2: BL01493___yerB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1058
# Identity: 694/1058 (65.6%)
# Similarity: 694/1058 (65.6%)
# Gaps: 130/1058 (12.3%)
# Score: 2112.0
#
#
#=======================================
BSNT_01126___ 1 ATGAAAAAATGG---------ATG--ACAGT--TTGCGCGCTGTGTTTCG 37
|||| ||| |.||| | |||.|||||.|
BL01493___yer 1 --------ATGGTGAATCGATATGTAAGAGTACT-----GCTTTGTTTTG 37
BSNT_01126___ 38 ---TGTTTTTTCTGCTTGTATCCTGCCAGCAGAAGGATGCTGTCCCGGAT 84
.|.||||.|||||||.|||.||||||..|.|||| .|.| |.|||.
BL01493___yer 38 CTTCGCTTTTACTGCTTGCATCGTGCCAGTCGCAGGA-ACAG--CAGGAA 84
BSNT_01126___ 85 AATGCAAAGAAGCTGAAAGCTCCTTTAACGGGGCTAAAGACTGAAC--AG 132
||.|.||||||..|..| |||..|.||.|||.|.|||.| |.|| ||
BL01493___yer 85 AAGGAAAAGAACATTCA---TCCGCTGACAGGGTTGAAGGC-GGACGGAG 130
BSNT_01126___ 133 AAAGTGACTGAACGCCGCCCTGTTGCTGTTGTGGTGAACAATCACCCGAA 182
|.|.| |.|.| ||.|||| .||||.|||||||||||||||||..|.||
BL01493___yer 131 ATATT--CGGCA-GCGGCCC-ATTGCCGTTGTGGTGAACAATCATTCAAA 176
BSNT_01126___ 183 GGCGAGGCCGCAGTCGGGTCTGTCTAAAGCCGACATTGTCATAGAAGCGC 232
.||.||||||||||||||..|....||.||.|||||||||||.|||||.|
BL01493___yer 177 AGCAAGGCCGCAGTCGGGATTAAGCAAGGCTGACATTGTCATTGAAGCTC 226
BSNT_01126___ 233 T-AGCCGAAGGGCAAATCACAAGATTTCTGGCCATTTTCCAAAGCCAGAT 281
| || .|||||.|..||||||.||||..||||.||.|..||||||.|.||
BL01493___yer 227 TCAG-TGAAGGACCGATCACACGATTGTTGGCGATCTATCAAAGCGATAT 275
BSNT_01126___ 282 GCCTGAAACTGTCGGACCTGTGCGGAGCGCGCGGGAATATTTC------G 325
|||||||.|.||.||.||.||.||.|||||.|||||.|||||| .
BL01493___yer 276 GCCTGAAGCGGTTGGCCCAGTCCGCAGCGCCCGGGAGTATTTCATTGATT 325
BSNT_01126___ 326 TCACTCTCAGCAATGGCTTTGACAGCATATTTGTCCATCACGGCTGGAGT 375
|..||||| ||.|||||||||||..||||.|||||||||||||||
BL01493___yer 326 TGGCTCTC------GGTTTTGACAGCATCCTTGTGCATCACGGCTGGAGT 369
BSNT_01126___ 376 CCCGGCGCCAAAGAGCAGCTG--GAATCCGGAGCTGCCGATTATATGAAC 423
||.||.||.|||||.|..||| ||| |||.|..||||||.||||.||.
BL01493___yer 370 CCGGGGGCAAAAGACCGCCTGTTGAA--CGGCGACGCCGATCATATCAAT 417
BSNT_01126___ 424 GGATTGGATTTTGACGGAAGCTTATTTTGGAGAGCTGATTTCAGCAAACC 473
|||.|||||...|||||.|.|.|.|||||||||||.|||||..|..||.|
BL01493___yer 418 GGAATGGATCACGACGGGACCCTGTTTTGGAGAGCCGATTTTCGGGAAGC 467
BSNT_01126___ 474 GCCCCACAATTCCTATACGTCTTATGATTACATAAAAAAGGCGGCGGA-- 521
|||.||.|||||.||.||.||.||..|..||.||||..|.||.||.||
BL01493___yer 468 GCCGCATAATTCGTACACATCATACAAAAACGTAAAGCAAGCAGCAGATG 517
BSNT_01126___ 522 ACAAAAGGGTTATAAGCTGAAGCA--GGAA-----ACAAATCCGCTGCTG 564
|||||.| |||.|| || |.|| |||.|.||||| |..
BL01493___yer 518 ACAAAGG----ATATGC-----CATCGAAACCCGCACAGAACCGCT-CAC 557
BSNT_01126___ 565 TTTCAAACATCAGATGCAAAATCTGCAAATGAATCTTACAATG------- 607
|||.||| ||||...||| ||.||.|||...|||
BL01493___yer 558 TTTTAAA--------GCAAGCCCTG---ATAAACCTTCGGATGCGCTTTA 596
BSNT_01126___ 608 -----TTCGGGTAGATTATGGAACAAAAAACGTTACAAATCTTGTCGAAT 652
|.|||.|||||||||||||||||..|||||||||.|.||||||||
BL01493___yer 597 TTCTATACGGTTAGATTATGGAACAAAATCCGTTACAAACCGTGTCGAAT 646
BSNT_01126___ 653 ACAACTATGATAAAAAAGCTGAATCTTATACAAGAAGCTCTGATGGTGTC 702
|....|||||||||||.|.||||...|||...||||..||.||.||.||.
BL01493___yer 647 ATGGTTATGATAAAAAGGTTGAAGGCTATGTGAGAAAGTCAGACGGCGTT 696
BSNT_01126___ 703 ATAACGACAGACCGGGAAACCGGAAAGCCGGTTGCAATACAAAATATTTT 752
.|.||.|||||||..|||||.|.|.|.|||||||...|.|||||.|||.|
BL01493___yer 697 TTGACAACAGACCTTGAAACAGAAGAACCGGTTGTTCTTCAAAACATTCT 746
BSNT_01126___ 753 CATTGTTGAAGCCAGCCATCATATTATTGATCAAGAT------GGAAGGC 796
.||.|..||||||...||||||||.| ||||| ||.||..
BL01493___yer 747 AATAGCGGAAGCCGAACATCATATGA------AAGATGCGTACGGGAGAA 790
BSNT_01126___ 797 GGGACATCGA-CTTGGAATCAGGAGGAAAAGGTCTGTTGTTTCAGGACGG 845
||||.||.|| |||.| .|||||.||||||||.||..|..|.||..||||
BL01493___yer 791 GGGATATTGACCTTCG-TTCAGGCGGAAAAGGACTCCTTCTGCAAAACGG 839
BSNT_01126___ 846 AAACGT-CATTGAAACAGACTGGAAACAAGTGAATGGCAGAATTGTGCCG 894
..|.|| |||.|.|.||| ||||||..|.|..||.|||.|.||..|.|||
BL01493___yer 840 GGAAGTCCATCGGATCAG-CTGGAAGAACGAAAACGGCCGGATCATACCG 888
BSNT_01126___ 895 ATAAAAGACGGCAA----GTGGCTTCCGTTTGTGCCAGGAAAGACTTGGA 940
|.....|||||||| | |||||||.|||||.|||||.||.||||
BL01493___yer 889 ACGGCGGACGGCAAAACCG----TTCCGTTCGTGCCGGGAAAAACGTGGA 934
BSNT_01126___ 941 TCAATATCGTACCTGATCTTGATGC--GGCTTCCATTAGTAAAGGAGAAG 988
||||||||||.||.||||| ..|| ||.|||.|||||.||||||||||
BL01493___yer 935 TCAATATCGTTCCCGATCT--CAGCAAGGTTTCTATTAGCAAAGGAGAAG 982
BSNT_01126___ 989 GTGTGTAA 996
||||||||
BL01493___yer 983 GTGTGTAA 990
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