Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01124 and BL01492
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_01124___yerA.1.5803.seq
# -bsequence dna-align/BL01492___yerA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01124___yerA-BL01492___yerA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01124___yerA-BL01492___yerA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01124___yerA
# 2: BL01492___yerA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1778
# Identity: 1344/1778 (75.6%)
# Similarity: 1344/1778 (75.6%)
# Gaps: 73/1778 ( 4.1%)
# Score: 4964.0
#
#
#=======================================
BSNT_01124___ 1 ATGTCCGAACGCACCTTTAACTGGAAAAACAAAGACATCAGGGCACAGGT 50
|||||||||||||||||.|..|||||||||||..|||||||..|.||.||
BL01492___yer 1 ATGTCCGAACGCACCTTAATTTGGAAAAACAAGCACATCAGATCGCAAGT 50
BSNT_01124___ 51 TGATGTTGTAGACTCAAAGCTGCTTCCAACGCTCCTTTTACGGAATGC-T 99
||||||||||...||||.|||||..|||||||||||||||||.||||| |
BL01492___yer 51 TGATGTTGTAAGTTCAAGGCTGCAGCCAACGCTCCTTTTACGAAATGCAT 100
BSNT_01124___ 100 CTCGTCTTAAATCCATATGTAAAACAATGGCTGAAAAAAAACATTTGGAT 149
|| ||..|.||.||.||||||||.||||||.|...|..||||.|.|||||
BL01492___yer 101 CT-GTACTGAACCCGTATGTAAAGCAATGGATTCCAGCAAACGTATGGAT 149
BSNT_01124___ 150 TTATCAGGACCGCATTGTTTATGTGGGTCATGAACTTCCGAATAGAGCCG 199
|.||||.|||.|.||.||||||||.||.|.|| |||| ||||
BL01492___yer 150 TCATCATGACAGAATCGTTTATGTCGGCCGTG-ACTT---------GCCG 189
BSNT_01124___ 200 AAGA--------AATTCATACGATTGATTGTGAAGGAAAATACATTGTGC 241
|||| ||..| |||.||.|||||||||||||||||||||||.|
BL01492___yer 190 AAGACGGCTGTTAAAAC-TACAATAGATTGTGAAGGAAAATACATTGTAC 238
BSNT_01124___ 242 CAGGTTATATTGAACCGCACGCACATCCTTTTCAAATATATAATCCCCAA 291
|.||.||||||||.|||||.|.|||||||||||||||.||||||||||||
BL01492___yer 239 CCGGGTATATTGAGCCGCATGTACATCCTTTTCAAATTTATAATCCCCAA 288
BSNT_01124___ 292 ACACTGGCGGAATATGTGTCTCAATACGGAACAACGACATTTGTGAATGA 341
||..||||.|||||||||||.||.|..|||||.||.|||||.||.|||||
BL01492___yer 289 ACTTTGGCCGAATATGTGTCACAGTTTGGAACGACCACATTCGTAAATGA 338
BSNT_01124___ 342 TAACTTATTTTTGCTTTTGCAAAGCGGAAAAAAGAAAGCGCTTACGATTT 391
.|||||.|||.|||||||.||..|||||||||||||||||.||.|.||..
BL01492___yer 339 CAACTTGTTTCTGCTTTTACATTGCGGAAAAAAGAAAGCGTTTTCTATAC 388
BSNT_01124___ 392 TGAATGAACTCAAAAAGCAGCCTGTCCAGTATTTTTGGTGGTCACGCTAT 441
||.|.|||||.|||||.|||||||||||.||.|.||||||||||.|.|||
BL01492___yer 389 TGGAGGAACTGAAAAAACAGCCTGTCCACTACTATTGGTGGTCAAGGTAT 438
BSNT_01124___ 442 GACCTCCAGACCGAGGTTCTGAACGAGGACCACGTCCT-----TCCATTT 486
|||.|.||||||||.||..||||.||.||.||..||.| ||.|||
BL01492___yer 439 GACTTGCAGACCGAAGTGTTGAATGAAGATCAAATCTTATCGATCGATT- 487
BSNT_01124___ 487 GACGTCAGAAAACAGTGGATTGAACATCCGGATGTGATTCAAGGCGGAGA 536
.|.|||||||.|||...|||||.||||||||.||.||.||.|||||
BL01492___yer 488 ----ACCGAAAACATTGGGGAGAACACCCGGATGTCATCCAGGGAGGAGA 533
BSNT_01124___ 537 AATGACCGGATGGCCTCGCCTGGTAGATGGTGATGATTTAATGCTCCACT 586
||||||.||.|||||.|||||..|.||.||.||||||.|.||.||.||.|
BL01492___yer 534 AATGACAGGCTGGCCGCGCCTTTTGGACGGCGATGATCTGATCCTTCATT 583
BSNT_01124___ 587 GCATGCA-AGCTAC--AAAGAAACAGCGAAAACGCATTGAAGGGCATTTT 633
||||||| .|| || |||||| .|.||||.||.||.||.||.||||||
BL01492___yer 584 GCATGCAGTGC-ACGAAAAGAA--GGAGAAAGCGGATCGAGGGCCATTTT 630
BSNT_01124___ 634 CCCGGCGCATCTGATAAAACGCTTACAAAAATGAAGCTGTTCGGTGCGGA 683
||.||.|||||.||.||||||||.||.||.||||||||.|||||.||.||
BL01492___yer 631 CCGGGGGCATCGGAAAAAACGCTGACGAAGATGAAGCTTTTCGGCGCTGA 680
BSNT_01124___ 684 TTGTGATCATGAAGCGATGACAGGTGATGAAGTGATGAGAAGGCTGGAAC 733
....|||||||||||.|||||.||..|.||||||.|||...||||.||||
BL01492___yer 681 CGCCGATCATGAAGCCATGACTGGAAAGGAAGTGCTGAAGCGGCTTGAAC 730
BSNT_01124___ 734 TGGGCTATTATGTTTCCCTTCGGAACTCTTCCATTCGCCCCGATGTAAGA 783
|.||.||..|.||...|.|..||.|.||||||||.|||||.|||.|..||
BL01492___yer 731 TTGGTTACCACGTCGGCTTGAGGCAGTCTTCCATCCGCCCTGATTTGCGA 780
BSNT_01124___ 784 AAAATCTTGCAAGAGCTGCATG-AGAAGGGCTTCCGCTATTATGACCACT 832
|||||.||||..||||||||.| |||| |||||.|.|.||||||||||..
BL01492___yer 781 AAAATTTTGCGCGAGCTGCACGAAGAA-GGCTTTCACCATTATGACCATA 829
BSNT_01124___ 833 TCTTTTACACGACAGATGGCGCAACCCCGAATTTCTATAAAGGCGGCATG 882
|.|||||.||.||.||.||||||||.|||||.||.|||||||..||||||
BL01492___yer 830 TGTTTTATACAACGGACGGCGCAACGCCGAACTTTTATAAAGAAGGCATG 879
BSNT_01124___ 883 ACAAACGAGCTGATTCGCATTGCGTTAGAAGAAGGCGTAC--CTGCAATC 930
||||||.||||||||...||.||..|.|||||.|||||.| ||| |||
BL01492___yer 880 ACAAACAAGCTGATTGAAATCGCCATCGAAGAGGGCGTGCCGCTG--ATC 927
BSNT_01124___ 931 GACGCCTACAATATGGCATCATTTAATATCGCAAAGTATTACCAAATGGA 980
||||||||.||||||||.||.|||||||||||.|||||||||||.|||||
BL01492___yer 928 GACGCCTATAATATGGCTTCGTTTAATATCGCGAAGTATTACCATATGGA 977
BSNT_01124___ 981 TG--ATTATTTAGGAGTTGTCGGACCGGGCAGACTGGCATCGCTCAACAT 1028
.| ||..|| ||.||.||.|.||||||||||...||..||||||||||
BL01492___yer 978 GGACATCCTT--GGGGTGGTTGCACCGGGCAGATACGCGACGCTCAACAT 1025
BSNT_01124___ 1029 ACTGGA-AGCTCCGTTAAATCCGAATCCCGTGACTGTTCTGTCAAAAGGG 1077
..||.| |||.|.|.|.|| ||||||||.|.|||.|||.||.|||||||
BL01492___yer 1026 TTTGAATAGCCCTGATGAA-CCGAATCCGGAGACGGTTTTGGCAAAAGG- 1073
BSNT_01124___ 1078 ACCATTCTGCGTGA-------AGACGGCTGTGATTTGAAGGCGTTTACAA 1120
||.|| ||| ||.||||....||.||||.||||||.||.
BL01492___yer 1074 -----TCGGC-TGATCAAATCAGGCGGCATAAATATGAATGCGTTTTCAG 1117
BSNT_01124___ 1121 AGACGGACTGGCACAAAGGCGGTCTTGTCTCGCTTGAA-CTTTCATATGA 1169
...||||.|||||.|||||.|||||||||.|.| |||| |||||||||||
BL01492___yer 1118 TTCCGGATTGGCAAAAAGGGGGTCTTGTCCCTC-TGAACCTTTCATATGA 1166
BSNT_01124___ 1170 TATGACGATGGATGACTTGCAGTTTTCTATGCCGATGGGCGTGAAAATGC 1219
|.|.|||||||||||.|||||||||||.||||||.|.|||.||||||||.
BL01492___yer 1167 TCTAACGATGGATGATTTGCAGTTTTCCATGCCGCTCGGCTTGAAAATGA 1216
BSNT_01124___ 1220 GGAATGCGGTTATTATGGAGCCCTATATGATTGAGATTGACAATTCGATG 1269
|||||.|.||.|||||||||||.||||.|||||||||||||||.||..||
BL01492___yer 1217 GGAATTCCGTCATTATGGAGCCTTATACGATTGAGATTGACAACTCTGTG 1266
BSNT_01124___ 1270 GAACAGCTCTCGTTTGACCATGATGAAAGTTATTTGACGATGCTCGACAG 1319
.|.|||||.||.|||||.|||||||||||.|||.|..||.||.||||||.
BL01492___yer 1267 AACCAGCTTTCTTTTGATCATGATGAAAGCTATCTCTCGCTGTTCGACAA 1316
BSNT_01124___ 1320 ACACGGGAAATGGCGCGTCAATACGATGATAAAAGGGTTTGCCTCAAGCG 1369
|.||||.||.|||||.||||||||||||.|.|||||.|||||..|..||.
BL01492___yer 1317 ATACGGAAAGTGGCGTGTCAATACGATGCTGAAAGGCTTTGCAACCCGCA 1366
BSNT_01124___ 1370 TGCAGGGATTTGTAAGCTCCTTTACGACGACGGGCGACATTGTCGCGATT 1419
|.||.||.||.||.|||||||.|.||||.|||||.||||||.|||||||.
BL01492___yer 1367 TCCAAGGTTTCGTCAGCTCCTATTCGACAACGGGAGACATTATCGCGATC 1416
BSNT_01124___ 1420 GGAAAAAATAAAGCGGATATGCTGCTCGCTTTCGCCCGCATGAAAGAAAT 1469
||.|||||.||.|..||.|||||..|.||.|||...||.|||||||||||
BL01492___yer 1417 GGCAAAAACAAGGAAGACATGCTTTTGGCCTTCAAACGGATGAAAGAAAT 1466
BSNT_01124___ 1470 CGGAGGAGGAATTGTTTTAGCGGAGAACAGAAACATTCTGCATGAAATCC 1519
|||||||||.||.||.||||||||.|||.||||.||||||||.|||||.|
BL01492___yer 1467 CGGAGGAGGTATCGTATTAGCGGAAAACGGAAAAATTCTGCACGAAATTC 1516
BSNT_01124___ 1520 CGCTTGCGCTGTGCGGCTGCGCCTC--TTCGGAAGCGTATGAAGACGTGC 1567
|.|||....|..|||||.||||.|| || ||..||||||||.|.||||
BL01492___yer 1517 CTCTTCATTTAAGCGGCGGCGCATCAATT--GAGACGTATGAAAAGGTGC 1564
BSNT_01124___ 1568 TTGAGAAGGAACAAAAGC--TGAGAGATCTTTTGACTGAAAGAGGCTATG 1615
||||.|.||| |||||| |.|.|||.|||.||..|||||||||||||.
BL01492___yer 1565 TTGAAAGGGA--AAAAGCGTTAAAAGAGCTTCTGTTTGAAAGAGGCTATA 1612
BSNT_01124___ 1616 AGTTTTGCGATCCTATCTATACGCTGCTCTTTTTGCAAAGTACGCACCTT 1665
.|||...|||.||.|||||.||.|||||||||||||||||.||.||.||.
BL01492___yer 1613 CGTTCGACGACCCGATCTACACCCTGCTCTTTTTGCAAAGCACCCATCTG 1662
BSNT_01124___ 1666 CCGTATATACGCATTACGCCAAGAGGAATCTTCGACGTCATGAAAAAAAC 1715
||.|||||..|..|.|||||.|.|||.|||||.||.||.|||||||||||
BL01492___yer 1663 CCTTATATCAGGGTGACGCCGAAAGGGATCTTTGATGTGATGAAAAAAAC 1712
BSNT_01124___ 1716 TGTACTCTTTCCATCGATAATGCGTTAA 1743
||||||||||||||||||||||||||||
BL01492___yer 1713 TGTACTCTTTCCATCGATAATGCGTTAA 1740
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