Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03000 and BL01470

See Amino acid alignment / Visit BSNT_03000 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_03000___ynfE.1.5803.seq
#    -bsequence dna-align/BL01470___ynfE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03000___ynfE-BL01470___ynfE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03000___ynfE-BL01470___ynfE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03000___ynfE
# 2: BL01470___ynfE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 271
# Identity:     188/271 (69.4%)
# Similarity:   188/271 (69.4%)
# Gaps:          20/271 ( 7.4%)
# Score: 612.0
# 
#
#=======================================

BSNT_03000___      1 GTGGATGAAATACTGAAACAGTATATGGTGC-TGTACAAAAAA----ATG     45
                     .||.||||||.|.||.|.||.||.|||.||| ||| |||..||    |||
BL01470___ynf      1 ATGAATGAAACATTGCAGCAATACATGATGCTTGT-CAAGGAACACTATG     49

BSNT_03000___     46 AGTAATATGATAAATGGTCCGGACTATCCAGGTAAGGAAAAAGACATCCA     95
                         |.|.|||.|||||.|||||.||..||||.|||||..|||||||..|
BL01470___ynf     50 ----ACACGATCAATGGACCGGATTACACAGGCAAGGAGGAAGACATTGA     95

BSNT_03000___     96 GCATCAAAAAGATCAGATCGAAGTTTACG-AAAAACAGTTGCAGCAAGGA    144
                     ..|...|||.||.||.|||||..|||||| .||||| |.|.||||||||.
BL01470___ynf     96 AAAGAGAAAGGAACAAATCGAGCTTTACGCCAAAAC-GCTTCAGCAAGGC    144

BSNT_03000___    145 TTTTCTACAGATTATGACTATGATGTGTTTGCTGATTCTGTTATCAAATG    194
                     |||||.||||||.||||||||||||..||.||.|||.|.||.||.|||||
BL01470___ynf    145 TTTTCAACAGATGATGACTATGATGAATTCGCAGATGCCGTGATTAAATG    194

BSNT_03000___    195 CGCATATGGCGATATGACGCTGGAGGATTTAGAAGCCGTTTATTATGGAT    244
                     ||||||.||.|||.|||||.||||.||.||||||.|.||||||...|.||
BL01470___ynf    195 CGCATACGGAGATCTGACGGTGGAAGAATTAGAAACGGTTTATCGGGAAT    244

BSNT_03000___    245 TGACAACGCCATTTTTTTGA-    264
                     |.||..|.||||       | 
BL01470___ynf    245 TAACGTCTCCAT-------AA    258


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