Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02200 and BL01469
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_02200___ykkB.1.5803.seq
# -bsequence dna-align/BL01469___ykkB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02200___ykkB-BL01469___ykkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02200___ykkB-BL01469___ykkB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02200___ykkB
# 2: BL01469___ykkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 593
# Identity: 325/593 (54.8%)
# Similarity: 325/593 (54.8%)
# Gaps: 160/593 (27.0%)
# Score: 765.5
#
#
#=======================================
BSNT_02200___ 1 ATGAACGCTAAA-----ACGAAGCTTGTGACCGATCGAATTCGTTTGCGC 45
|||||.| |.| |.||| |||.||.||..||..|||||
BL01469___ykk 1 ATGAAAG--ACATGATCATGAA------GACAGACCGGCTTATTTTGC-- 40
BSNT_02200___ 46 TGTATGGAAGAT----CGGGATCAAGCC----ACTTTGTTTGGGCTGCT- 86
|.||.|| ||.|||.|.||| || |||||
BL01469___ykk 41 -----GAAAAATGAGGCGCGATGACGCCGAAAAC----------CTGCTC 75
BSNT_02200___ 87 ------TTTTAATGATCCTGAC------GTCATGACATATTATTC--CGG 122
|||| ||||| |..|||..|||||||.| ||
BL01469___ykk 76 GAAATCTTTT-------CTGACCCGATAGCAATGGAATATTATCCATCG- 117
BSNT_02200___ 123 TTTA-AAAGATAAGAGGCAAACCCGCGAGTGGGTCAATTGGAACCAACGA 171
| ||||| |.|.|||.|.|..|.|| ||| ||||.|.|.||.
BL01469___ykk 118 ---ACAAAGA----ATGAAAAACAGACATTG---CAA-TGGATCGACCGG 156
BSNT_02200___ 172 A------------ATGAAAAAGGGTACGG---CGTTAGTCTGTGGATCGC 206
| |||||||| .|||| || ||||||||.|.||
BL01469___ykk 157 ACGCTTGAAAACTATGAAAAA---CACGGAACCG---GTCTGTGGGTTGC 200
BSNT_02200___ 207 CGAAGATAAGCGGACAGGGGAGTTTTTGGGGCAATGCGGCACTGTTCCCC 256
||||.||||.|..||.||.||.|||||.||.||||||||||..||.||.|
BL01469___ykk 201 CGAACATAAACAAACGGGCGAATTTTTAGGCCAATGCGGCATCGTGCCAC 250
BSNT_02200___ 257 AGCAGATCGAA-AATCAAACCGTAATGGAAATTGGCTATATGTTTGCCCG 305
||.|..||||| .|||.|| ||.|||||||||.||||||.|||||...||
BL01469___ykk 251 AGGAAGTCGAAGGATCGAA-CGAAATGGAAATCGGCTATTTGTTTAAACG 299
BSNT_02200___ 306 CCGCCACTGGGGGAACGGCTATGCGCAA--GAAGCGGC-TCGGGCCTGTC 352
..||..||||...||||||||| |||| |||||.|| || .||.||..
BL01469___ykk 300 GAGCGTCTGGAAAAACGGCTAT--GCAACCGAAGCAGCATC-AGCATGCA 346
BSNT_02200___ 353 TGGACTATGGCTTTAACGAGCGGCAGTTCGGC-----AAAATGGCGGCTT 397
...|.|||||.||| |.|.||.|||..| |||||.|...|||
BL01469___ykk 347 AACAATATGGATTT-----GAGTCATTTCATCTGAAAAAAATCGTATCTT 391
BSNT_02200___ 398 TGATTGATCCGGGTAACAAA-----GCGTCCATACGGGTAGCGGAGAAAA 442
|...||||.|| |||| .||||||.|...|||||.||...||
BL01469___ykk 392 TACCTGATGCG-----CAAAATCTGCCGTCCAGAAAAGTAGCCGAACGAA 436
BSNT_02200___ 443 TCGGTATG-CATCACAGCGAAACGACCAGA---AAATGG----AATAAAC 484
||||.||| |.|.| ||||..||.|.| |||||| ||.||
BL01469___ykk 437 TCGGCATGACTTTA----GAAAAAACAATACATAAATGGGGAAAAGAA-- 480
BSNT_02200___ 485 CGATCGCGGTATATGAAAGAAAATCTTACAATTGA-------- 519
||.||.|||||| || |.||.
BL01469___ykk 481 --ATTGCCGTATAT---------TC-----AGTGTATCGCTAA 507
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