Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03151 and BL01466
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:49
# Commandline: needle
# -asequence dna-align/BSNT_03151___yocS.1.5803.seq
# -bsequence dna-align/BL01466___yocS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03151___yocS-BL01466___yocS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03151___yocS-BL01466___yocS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03151___yocS
# 2: BL01466___yocS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity: 710/1003 (70.8%)
# Similarity: 710/1003 (70.8%)
# Gaps: 59/1003 ( 5.9%)
# Score: 2375.5
#
#
#=======================================
BSNT_03151___ 1 ATGGACA-TCATTAGA--AAAATAAGTCATTTTGCAGGACAAACCTTTGG 47
||| | |.|||.|| |||||.|||||.|||||||||.||||.||.|.
BL01466___yoc 1 ATG---AGTTATTTGATCAAAATCAGTCAATTTGCAGGAAAAACGTTCGC 47
BSNT_03151___ 48 CATATGGGTCATTGTTTTTGCAGTGCTGGGATTTTCTTTCCCATCTTTAT 97
|||.|||||.|||.|.|||||..|.||.||.|||.|.||.||.||....|
BL01466___yoc 48 CATTTGGGTGATTCTATTTGCGATTCTCGGCTTTGCCTTTCCGTCGCAGT 97
BSNT_03151___ 98 TTACGTGGATCAGT-TCTTATATTACGATTTTTCTTGGCATTATCATGTT 146
|.||.|||||| || .||||||||||||||.|.||||||.|.||.|||||
BL01466___yoc 98 TCACTTGGATC-GTCCCTTATATTACGATTCTGCTTGGCGTGATTATGTT 146
BSNT_03151___ 147 TGGGATGGGCCTTACACTGCAAGCCGATGATTTCAAAGAGCTGGTCAGAA 196
|||.|||||..|.|||.||..|||.||.|||||.|||||||||.|.|||.
BL01466___yoc 147 TGGCATGGGATTGACATTGTCAGCGGACGATTTTAAAGAGCTGCTGAGAC 196
BSNT_03151___ 197 AGCCTTGGCAAGTTATTATTGGAGTAATAGC----TCAGTATACGATCAT 242
..||...|||.||..|.||.||.|| || |||.||||||.|.||
BL01466___yoc 197 GTCCCCTGCATGTGCTGATCGGTGT----GCTGATTCAATATACGGTGAT 242
BSNT_03151___ 243 GCCGCTCGTTGCTTTCGGCCTCGCATTTGGGCTTCATCTTCCAGCTGAAA 292
||||.|..|.|||||.||.||.||.|.|||.||...|||.||..|.||||
BL01466___yoc 243 GCCGTTGCTCGCTTTTGGACTGGCCTATGGACTCGCTCTCCCCCCCGAAA 292
BSNT_03151___ 293 TCGCAGTTGGTGTTATTCTTGTCGGCTGCTGTCCCGGGGGAACTGCATCT 342
|.|||||.||.|||||..|.||.||.|||||.|||||||||||.|||||.
BL01466___yoc 293 TAGCAGTGGGGGTTATATTAGTGGGATGCTGCCCCGGGGGAACAGCATCA 342
BSNT_03151___ 343 AATGTTATGACATTCTTAGCAAAAGGAAATACTGCCCTTTCTGTTGCGGT 392
||.||.||||||||..|.|||||.||.||||..|||||.|||||.|||.|
BL01466___yoc 343 AACGTCATGACATTTCTGGCAAAGGGGAATATCGCCCTGTCTGTGGCGAT 392
BSNT_03151___ 393 TACGACAATTTCTAC-CTTATTGGCACCTGTTGTAACACCGTTGTTGATT 441
.||.||..||||.|| ||..|| ||.|||.||.||||.|||||..|.|||
BL01466___yoc 393 CACAACGCTTTCCACACTGCTT-GCCCCTTTTTTAACGCCGTTTCTCATT 441
BSNT_03151___ 442 ATGCTGTTTGCCAAAGAATGGCTTCCTGTCTCGCCGGGGTCTTTGTTTAT 491
.|..|.||.||.||.|||||||||||.||.||.|||||.|||.||||..|
BL01466___yoc 442 TTATTTTTCGCGAAGGAATGGCTTCCGGTATCTCCGGGCTCTCTGTTCGT 491
BSNT_03151___ 492 CTCAATCTTACAGGCGGTTTTATTTCCGATCATTGCAGGTCTGATTG-TC 540
.||.||.|||||||||||..|..|.|||||.||.||.||.|||||.| ||
BL01466___yoc 492 GTCGATTTTACAGGCGGTGCTGCTCCCGATTATCGCCGGGCTGATCGTTC 541
BSNT_03151___ 541 AAAATGTTTTTC---AGAAAACAAGTGGCAAAAGCCGTACATGCCCTTCC 587
|| |||||| |.||||||||||..||||||.|||||.|..||.||
BL01466___yoc 542 AA----TTTTTCTTTAAAAAACAAGTGAAAAAAGCTGTACAGGTGCTCCC 587
BSNT_03151___ 588 GCTTGTTTCTGTCATTGGCATCGTTGCGATTGTCTCAGCTGTCGTCAGCG 637
||||||.||.||..|.||||||||.||.||.|||||.||.||||||.|.|
BL01466___yoc 588 GCTTGTCTCCGTTCTCGGCATCGTCGCCATCGTCTCCGCAGTCGTCGGAG 637
BSNT_03151___ 638 GCAATCGGGAAAATCTGCTTCAATCGGGGTTGCTCATTTTTTCAGTTGTT 687
|||||||||||||..|..|||||||.|||.||||.||||||.|.||.|||
BL01466___yoc 638 GCAATCGGGAAAACATTATTCAATCAGGGCTGCTGATTTTTGCGGTAGTT 687
BSNT_03151___ 688 ATCCTGCATAATGGTATCGGTTATTTACTTGGGTTTCTTTGTGCAAA--G 735
.|.||.||||||||..||||...|||.||.||.|||.|||..||||| |
BL01466___yoc 688 GTTCTTCATAATGGCCTCGGACTTTTCCTCGGCTTTGTTTTGGCAAAGTG 737
BSNT_03151___ 736 CTTTTAAAAATGGATTACCCGTCTCAAAAAGCGATTGCAATCGAAGTCGG 785
|||| |||||||||||..||||.||||||||..|..|.||.||.|||||
BL01466___yoc 738 CTTT--AAAATGGATTATGCGTCGCAAAAAGCCGTGTCCATTGAGGTCGG 785
BSNT_03151___ 786 CATGCAAAACTCCGGGCTTGGGGCTGCACTTGCCACGGCTCATTTCTCAC 835
||||||.||.||.||.||.||.||.|||.|.||.|||||.||.|||||.|
BL01466___yoc 786 CATGCAGAATTCGGGTCTCGGCGCGGCATTGGCGACGGCGCACTTCTCCC 835
BSNT_03151___ 836 CGCTATCTGCCGTACCAAGCGCAATATTCAGTGTGTGGCATAACCTTTCA 885
||||.||.||.||.||.|||||..|.|||||.||.||||||||.||||||
BL01466___yoc 836 CGCTTTCAGCTGTTCCGAGCGCTGTGTTCAGCGTCTGGCATAATCTTTCA 885
BSNT_03151___ 886 GGTTCTAT-GCTTGCAACATATTGGTCCAAAAAAGTGAAAAAGATACAAG 934
||||| || ||||||.|||||.|||.|||||||| |.|||.|.|| ||
BL01466___yoc 886 GGTTC-ATGGCTTGCGACATACTGGGCCAAAAAA---ACAAATAAAC-AG 930
BSNT_03151___ 935 CTGGATCCGA-AAGCA------------GCAATCTATCA--------CTT 963
..|.|| || ||.|| ||||...||.| |||
BL01466___yoc 931 AAGAAT--GACAATCATTCTCCTGCCCCGCAAATGATAAATAAAAAGCTT 978
BSNT_03151___ 964 TAA 966
|.|
BL01466___yoc 979 TGA 981
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