Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03172 and BL01444
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_03172___yojE.1.5803.seq
# -bsequence dna-align/BL01444___yojE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03172___yojE-BL01444___yojE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03172___yojE-BL01444___yojE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03172___yojE
# 2: BL01444___yojE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 974
# Identity: 649/974 (66.6%)
# Similarity: 649/974 (66.6%)
# Gaps: 118/974 (12.1%)
# Score: 1991.0
#
#
#=======================================
BSNT_03172___ 1 ATGCAAT-ATTCA---GAAACAAAAAAAGGCGTTATTTACACAGCCGTTT 46
||| ||| ||||| .|||| .|||||..|.|||||||||||..|||
BL01444___yoj 1 ATG-AATCATTCATCTCAAAC---GAAAGGAATCATTTACACAGCGCTTT 46
BSNT_03172___ 47 CCTTTATCATGTGGGGCCTGTTTCCGCTCTATTGGAAGCTTCTCGAACAG 96
|.|.|.|..|||||||.||..||||..|.||||||||..|.|||||.|||
BL01444___yoj 47 CTTATTTGCTGTGGGGGCTCCTTCCTTTATATTGGAAAGTGCTCGATCAG 96
BSNT_03172___ 97 -CTGCCG-GCTCTTGATATTTTGGCTCATCGTATTATATGGTCTTTTGTT 144
|.|||| |||| ||||||.||||.||.||.|||||.|||||.||||||
BL01444___yoj 97 ACGGCCGCGCTC--GATATTCTGGCGCACCGGATTATCTGGTCATTTGTT 144
BSNT_03172___ 145 TTTATGTGTATCGTACTTTTTTTCTTGCGGCAATGGAAAATAGGATGGCA 194
||||||||....||.|||.|..|.||||||||.|||||||..||| |.||
BL01444___yoj 145 TTTATGTGCGGGGTGCTTCTCGTTTTGCGGCAGTGGAAAAACGGA-GTCA 193
BSNT_03172___ 195 GGAGC--TGCGCTCTCT-----GAAAAAGAACGGA--GGGATCCTCTCTT 235
.||| |.|||||.|| ||||..|||.||| ..|.|||.|||.|
BL01444___yoj 194 -AAGCATTTCGCTCGCTTTCGGGAAACCGAAAGGAATTTGTTCCGCTCAT 242
BSNT_03172___ 236 TATTTCTTG-CTTCTATCCTGATTTCGATCAACTGGTTTGTATACATATG 284
| ||| |.||..|.||||||||||||||.||||.|||.||||||||
BL01444___yoj 243 T-----TTGTCGTCCGTTCTGATTTCGATCAATTGGTATGTCTACATATG 287
BSNT_03172___ 285 GGCTGTAAACCATGGCTTTTTGCTTGAGGCTAGTCTTGGCTATTACATTA 334
|||.||.|.|.|.||||.|.|.|||||.||.||.||.|||||.|||||.|
BL01444___yoj 288 GGCCGTCAGCAACGGCTATATTCTTGAAGCGAGCCTGGGCTACTACATCA 337
BSNT_03172___ 335 ATCCGCTTGTATCAGTGCTCCTTGGGATTTTATTTTTAAAGGAAAAACTG 384
|||||||.|||||..|..|.||.||.|||.|.||||||||||||||.||.
BL01444___yoj 338 ATCCGCTCGTATCGATCGTTCTCGGAATTGTCTTTTTAAAGGAAAAGCTA 387
BSNT_03172___ 385 AATCGCCTGCAATTAGTGGCCGT--TTCGATTGCGGCAGCCGGTGTCATC 432
|..||..||||...||.|||.|| ||| |.||.||...|||.||..|.
BL01444___yoj 388 ACGCGGATGCAGGGAGCGGCAGTTCTTC--TCGCTGCCCTCGGCGTGCTT 435
BSNT_03172___ 433 ATCTCGGCGTTCCAATACGGCTCCATTCCTTATGTTGCGCTTCTCCTCGC 482
||.||.||.||.||.|||||.|||.|.||.||..|.||.||..|.|||||
BL01444___yoj 436 ATTTCAGCTTTTCAGTACGGGTCCGTGCCGTACATCGCCCTGATGCTCGC 485
BSNT_03172___ 483 ATTCAGCTTTGGGCTGTACGGGTTAAGC-AAAAAAAGAACAAGCCTGCCG 531
|||||||||.|||||.|||||..| .|| |||||..|.|||...||..|.
BL01444___yoj 486 ATTCAGCTTCGGGCTCTACGGACT-GGCGAAAAAGCGCACATCGCTCTCA 534
BSNT_03172___ 532 AGCGCCATCGGTTTAACGCTGGAAACATTCATGATTATGCCGATTGCATT 581
||.|||||.||..|.||..|||||||..|.|||||....|||.||||
BL01444___yoj 535 AGTGCCATAGGACTTACTTTGGAAACGATGATGATCGCTCCGGTTGC--- 581
BSNT_03172___ 582 AGGG---TATTTGCTGTTCAGCGGACATGTTCAGCCAGCGGGTGCAGAAA 628
||.| ||..|||||||| ||||||||.|.|| ||||.
BL01444___yoj 582 AGCGATCTACCTGCTGTTC----------TTCAGCCATCCGG---AGAAG 618
BSNT_03172___ 629 GC---GG-------AGGGA----CG------TGGCTGCTTCTCTTTTTGG 658
|| || ||||| || ||| ||||.||.|||.|||
BL01444___yoj 619 GCTCAGGCAGCCTCAGGGAGCATCGGCATGATGG-TGCTGCTGTTTCTGG 667
BSNT_03172___ 659 CCGGTGTGTTTACGGCTTTGCCGCT-CTTATTGTTTGCGGAAGGAGC--- 704
|.||.|||.|.||.||..|.||||| ||| ||.|||||||||||.||
BL01444___yoj 668 CGGGGGTGCTGACCGCGATTCCGCTGCTT-TTATTTGCGGAAGGTGCAAA 716
BSNT_03172___ 705 GAAACGGCTGCCACTGTATCAAGTCGGTATCTTACAATATATTGCGCCGA 754
|||| |||||.||.|||||||||||.||.||.||||||||.||.||||
BL01444___yoj 717 GAAA---CTGCCGCTCTATCAAGTCGGCATTTTGCAATATATCGCTCCGA 763
BSNT_03172___ 755 CCATTACCCTTCTGATCGGGCTGTTT--GTTTACCATGAGCCATTTTCA- 801
|||||| |.||.||.|..||| |||| ||.||||||||.|| .||||
BL01444___yoj 764 CCATTA-CATTATGTTTAGGC-GTTTTCGTCTACCATGAACC--GTTCAA 809
BSNT_03172___ 802 -AGCTCGAAGGCTTTTACATTCAGCTGTATATGGGCTGCGCTGATCTTGT 850
|||...||||..|||||.||...|||.||||||||.||||||||.||||
BL01444___yoj 810 CAGCAGCAAGGTCTTTACGTTTTCCTGCATATGGGCGGCGCTGATATTGT 859
BSNT_03172___ 851 TTACGTTTTCACAAGTGAAGTGGAA---ACGGGCG---------TCAAAA 888
||||..||||.|||.|..|.||||| ||.||.| |.||||
BL01444___yoj 860 TTACACTTTCGCAATTTCAATGGAAGAGACCGGAGAAGGTATTTTTAAAA 909
BSNT_03172___ 889 AG--------CCATTGA------- 897
|| ||.||.|
BL01444___yoj 910 AGAAAAAAATCCTTTCATCCGTAA 933
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