Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03217 and BL01429

See Amino acid alignment / Visit BSNT_03217 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_03217___yodP.1.5803.seq
#    -bsequence dna-align/BL01429___yodP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03217___yodP-BL01429___yodP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03217___yodP-BL01429___yodP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03217___yodP
# 2: BL01429___yodP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity:     524/953 (55.0%)
# Similarity:   524/953 (55.0%)
# Gaps:         244/953 (25.6%)
# Score: 1127.0
# 
#
#=======================================

BSNT_03217___      1 ATGCTCAAGTCAATAAAGAGTAGCGGTGTCA-CAGCAGTTTTGGACC--A     47
                     |||.|.||      |||..|.|||..||.|| |.|||...|||.|.|  |
BL01429___yod      1 ATGGTGAA------AAAATGGAGCAATGACAGCTGCACGCTTGAAGCGGA     44

BSNT_03217___     48 TGACG----GTTTTAATAAACGAATCAGAGTGGTCCGTTATGACGGAGCC     93
                     ||.||    | ||.|..|||.|.||||||.|.|||..||||||   ||.|
BL01429___yod     45 TGTCGACTTG-TTCAGCAAAAGGATCAGAATTGTCAATTATGA---AGGC     90

BSNT_03217___     94 ATTGAGAAGGTTC-----TGCCGGATATCGTGGCAGCGGCAAAAGAAGAG    138
                     |.||.|  .||||     |.||.||.||..||..||..||||||.||.|.
BL01429___yod     91 AATGTG--TGTTCATTTTTTCCCGACATACTGAAAGAAGCAAAAAAACAT    138

BSNT_03217___    139 AATGCAGAAAAAATCATCGTCTATGCGAAGCAGCA-------TGA---TG    178
                     .||..||..|||||.|||.|.|       .||.||       |||   .|
BL01429___yod    139 GATATAGGGAAAATTATCATTT-------TCACCAAAACGACTGACAGAG    181

BSNT_03217___    179 AGCCAATGCTTG-CCAAACAATTATTTGCGCCGGAGGGCTATCTAAAGGG    227
                     |..||.|||||| .|..||    .||||..|||||.||..|..|..|.||
BL01429___yod    182 ACGCATTGCTTGAGCGGAC----GTTTGAACCGGAAGGGAAAATCGACGG    227

BSNT_03217___    228 CTATTATCTCGGCCATTCGGCT--TGTGTCATGGTACGTTATCTGTCAGA    275
                     .||.|.|..|||.|||...|||  .||||  |.|||...|||.|...|||
BL01429___yod    228 ATACTTTAACGGGCATGATGCTGACGTGT--TCGTAAAATATGTAAAAGA    275

BSNT_03217___    276 A---AGCCGAAGACAAACAGAT-----TCTTATACAGAGGAACAGGAGAT    317
                     |   ||.||||   ||||.|.|     .|||||.|||          |||
BL01429___yod    276 AGACAGGCGAA---AAACCGCTGACTGGCTTATGCAG----------GAT    312

BSNT_03217___    318 CA-----TCGAAGCCATATATC-GCACAGCGCCCCGTCTTCGCAACGA--    359
                     ||     |.|.||...|.| || |||||   ||||| |.||||  |||  
BL01429___yod    313 CAAATGCTGGCAGAGCTGT-TCAGCACA---CCCCG-CATCGC--CGAGA    355

BSNT_03217___    360 --CAGTAAACCCGTT--TTTACGATGAGAAAAGCAGAAACAAACGACATG    405
                       ||  ||||.| ||  ||||..||.||    ||.|        |.|.|.
BL01429___yod    356 TCCA--AAACGC-TTCCTTTAAAATCAG----GCGG--------GCCGTC    390

BSNT_03217___    406 TACCAGCTATCGATG---CTGTATAAAAAAGTATTTCGCACGTACC----    448
                     |     ||.|.||||   ||||           |.|||| || |||    
BL01429___yod    391 T-----CTGTTGATGCGCCTGT-----------TCTCGC-CG-ACCTCTA    422

BSNT_03217___    449 CAAC--------CCCAGTATTTGACCCCGC------------TT----AT    474
                     ||||        .||.||||   |.|||||            ||    ||
BL01429___yod    423 CAACAGCGTCTTTCCTGTAT---ATCCCGCACCTGTTTCAGATTCGGCAT    469

BSNT_03217___    475 AT-TGAA--AAGACGATGAATGCAAATACGG-TGTATTA-TATCATG-TT    518
                     || |.||  ||| |||||   |.|||...|| ||| ||| ||.|..| ||
BL01429___yod    470 ATCTCAAGGAAG-CGATG---GGAAAGGGGGCTGT-TTACTACCTCGCTT    514

BSNT_03217___    519 TGATCATGACCGCCTGA-----TCAGCG---CAGCAAGCGCAGAAATCAA    560
                     |     ||||.||  ||     |||..|   |||||.|||||||..|.||
BL01429___yod    515 T-----TGACGGC--GAAAAAGTCATTGCATCAGCAGGCGCAGACGTTAA    557

BSNT_03217___    561 TCCAGAGCTT--GGGCATGCAGAAATAACCGATTGCGCTGTGCTGCCGGA    608
                     |||  .||||  |||.||||.|||||||||||.|||||.||.||||||||
BL01429___yod    558 TCC--CGCTTTGGGGAATGCGGAAATAACCGACTGCGCCGTCCTGCCGGA    605

BSNT_03217___    609 ATATCGCGGCCATTCGTTAACAAGCTTTTTAATCGAGGCGTTAGAAA---    655
                     |||..|.|||..|||.||.||.||....||.||.|..|.|.|.||||   
BL01429___yod    606 ATACAGGGGCTTTTCATTGACGAGGCGGTTGATTGCCGAGCTTGAAACCG    655

BSNT_03217___    656 -----AAGAAAT--GGCTGGAAAGGATATCTTTCATGTGTTTTCTC--TC    696
                          |||.|||  |||          ||||||  ||.|||||.||  ||
BL01429___yod    656 ACTTGAAGCAATCGGGC----------ATCTTT--TGCGTTTTTTCAATC    693

BSNT_03217___    697 GCCCGTGCTTCGTCTTTTGGGATGAATG-CTGTGTTGTACCATTCAGGTT    745
                     ||..|.||..|.|||||.||.|||||.| |.||.|| ||.|||     ||
BL01429___yod    694 GCAAGAGCGGCTTCTTTCGGAATGAACGCCAGTCTT-TATCAT-----TT    737

BSNT_03217___    746 ATCA-----ATATGGCGGAAGGCTGATCAATAATTGC----TTTATAGCC    786
                     ||||     |||..|.||..||||..|.||.||.|||    |||||||  
BL01429___yod    738 ATCATACTCATACAGGGGCCGGCTTTTGAACAACTGCCTCATTTATAG--    785

BSNT_03217___    787 GAAGGCCTTGAAAACATGAATATTTGGTGCAAGCAACTGTAA--------    828
                       |.||.||||.||.|||||.||.||||||||  ||.|.|||        
BL01429___yod    786 --AAGCATTGAGAATATGAACATCTGGTGCAA--AAATTTAAGCCGGTCT    831

BSNT_03217___    828 ---    828
                        
BL01429___yod    832 TAA    834


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