Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03225 and BL01423

See Amino acid alignment / Visit BSNT_03225 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_03225___cgeE.1.5803.seq
#    -bsequence dna-align/BL01423___cgeE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03225___cgeE-BL01423___cgeE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03225___cgeE-BL01423___cgeE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03225___cgeE
# 2: BL01423___cgeE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     507/882 (57.5%)
# Similarity:   507/882 (57.5%)
# Gaps:         213/882 (24.1%)
# Score: 1134.5
# 
#
#=======================================

BSNT_03225___      1 ATGACAGGACATTATTCAAAAACGGAACATCAATATATATTGTTAACGT-     49
                     .||||| ..|||  ||||||.||.|||.|.|..|||.||.||.|.||.| 
BL01423___cge      1 GTGACA-TCCAT--TTCAAACACAGAAGACCGTTATTTAATGCTGACATG     47

BSNT_03225___     50 -----------CTGAATCGGCATCGTTTGATCATTACAGCGTATACAGAG     88
                                .|||||| .||     |.|||||      .||||||.||
BL01423___cge     48 CAGCAAAAAAATTGAATC-CCA-----TTATCAT------ATATACACAG     85

BSNT_03225___     89 ATCCGCAGCTTCCGCAAATTTTT---TCTCATAACTTTGTTCAGCTCCAT    135
                     ||..|.||.|.|||||.||.|||   ||||||   |||.|.|||||.||.
BL01423___cge     86 ATGAGGAGATCCCGCAGATGTTTTCCTCTCAT---TTTCTGCAGCTGCAG    132

BSNT_03225___    136 GATACG--TTTCCATTG---GAGCGGTTACTTAACTTTTTACCCT--CCG    178
                     |  |||  |||||..||   ||||.||      |||     ||||  .||
BL01423___cge    133 G--ACGATTTTCCGCTGACAGAGCTGT------ACT-----CCCTGCTCG    169

BSNT_03225___    179 T------ACC--AAAGCTGCTTGATGCG-AATTATCTCCAT---------    210
                     |      |||  |||   ..||.|..|| ||||||.|.|||         
BL01423___cge    170 TTCGGACACCCGAAA---TTTTAAAACGAAATTATGTTCATGTGAAAAGC    216

BSNT_03225___    211 --TTAAAAGCG---TC-GCCGCAGCATGTTTTTCCGCTCGGTTTGAAGCA    254
                       |||.|||||   || |||         ||||.||      .||||..|
BL01423___cge    217 TCTTATAAGCGGGATCTGCC---------TTTTACG------ATGAAAAA    251

BSNT_03225___    255 GTCGC---TTGTAAAAAGC--GGTTTTGTCGTCGAGGATGAGCTACTATA    299
                     |||||   |||     |.|  ||.|.|.|..|.||.||.||..|..|.||
BL01423___cge    252 GTCGCTCTTTG-----ATCTTGGCTATATTCTTGATGAAGAATTGTTTTA    296

BSNT_03225___    300 TGACATGAAGCTTAGTGACTGGAAGGGGCAGATGGGACATCC-----TTT    344
                     |..|||.|.||||...||.|||||.||  ||||      |||     |.|
BL01423___cge    297 TTCCATCAGGCTTGCAGATTGGAAAGG--AGAT------TCCCCTGGTGT    338

BSNT_03225___    345 AACCGCA---TGGGGGACGGCAAAAA---GTCTTTGCGACGGATCTTC--    386
                     |...|||   |||||||||| |.|||   .||.||  |||||  ||.|  
BL01423___cge    339 ACGGGCAGAGTGGGGGACGG-AGAAATCGCTCATT--GACGG--CTGCCG    383

BSNT_03225___    387 TATTATGAAAATTTACGATTCCATT---TAT--ATTGGAGAAGCAATCGC    431
                     .||.|||.|...|||.|| |.||||   |||  ||    |||||..|.||
BL01423___cge    384 CATGATGCAGGCTTATGA-TACATTGTCTATCAAT----GAAGCGTTTGC    428

BSNT_03225___    432 TGAACAAAAA-----TTAAAAAGAAAATATCCTTTCTATGAAGCAGGTAT    476
                      |||..||||     |    ..|.||.||||||||.|||||.|.|||   
BL01423___cge    429 -GAAGGAAAAGCTGCT----GCGCAAGTATCCTTTTTATGAGGAAGG---    470

BSNT_03225___    477 AATCATTC--TTGT-TGTTTGTTACAGCG--ACCAGGCACAGAAAGTTCC    521
                     .|||||||  .||| |||.||.||| .||  |..||||   |||    ||
BL01423___cge    471 CATCATTCAGCTGTGTGTCTGCTAC-TCGGAAGAAGGC---GAA----CC    512

BSNT_03225___    522 CATTGGGTGCGGCGAGCTGTTTATCGATC-ATCAAGA-GAAAACG--GCT    567
                     .|||||.||.|..||||  ||||||  || ||||.|| |||||||  |||
BL01423___cge    513 GATTGGATGTGCTGAGC--TTTATC--TCGATCACGACGAAAACGTTGCT    558

BSNT_03225___    568 AAAATCGAAGAAGTGGCAATTTTAGATCAGTTTCAAAGGAAGGGCTACGG    617
                     ||||||||||||||.||.|||||.||.|..|..||..||||.|||||.||
BL01423___cge    559 AAAATCGAAGAAGTCGCCATTTTGGAGCCATACCAGCGGAAAGGCTATGG    608

BSNT_03225___    618 CAGTAT-----CTTAGTGAAAGAAATGCTGTCCATCGCCAAATCACT-AG    661
                         ||     |||| |.||..|.|||||..||..||||||| ||.| .|
BL01423___cge    609 ----ATCGGGCCTTA-TCAAGCAGATGCTCACCGCCGCCAAA-CAATCGG    652

BSNT_03225___    662 GAATGGAAGCAGCCTA-CTTAGTGGCT---GCAAGCACTGACGGTGCAAC    707
                     |.||||||.|...||| ||| ||..||   |.||||..|.| ||||.|| 
BL01423___cge    653 GCATGGAATCGTGCTATCTT-GTAACTTCGGGAAGCGATCA-GGTGAAA-    699

BSNT_03225___    708 TCA-GTTTTACGAAAAGCTGACGTTTAA--------AAAATATGAGCGGG    748
                       | ||||||.|||||||||...|||.|        ||||..|.| ||  
BL01423___cge    700 --ACGTTTTATGAAAAGCTGGGCTTTCAGCAGAAGGAAAAGCTCA-CG--    744

BSNT_03225___    749 TGCATACTGTATTTCATTATTTCCTTACATGA    780
                          ||..|||||.|.|||||..|...||.|
BL01423___cge    745 -----ACAATATTTAAATATTTGTTCGTATAA    771


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