Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03236 and BL01421

See Amino acid alignment / Visit BSNT_03236 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_03236___msrA.1.5803.seq
#    -bsequence dna-align/BL01421___msrA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03236___msrA-BL01421___msrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03236___msrA-BL01421___msrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03236___msrA
# 2: BL01421___msrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 566
# Identity:     404/566 (71.4%)
# Similarity:   404/566 (71.4%)
# Gaps:          52/566 ( 9.2%)
# Score: 1421.0
# 
#
#=======================================

BSNT_03236___      1 ATGTCTGAAAAAAAAGAAATCGCCACATTTGCAGGAGGCTGTTTTTGGTG     50
                     |||.||||||||...|||.|||||||||||||.||||||||.||||||||
BL01421___msr      1 ATGGCTGAAAAACGCGAACTCGCCACATTTGCCGGAGGCTGCTTTTGGTG     50

BSNT_03236___     51 TATGGTTAAACCTTTTGACGAACAGCCGGGAATTGAAAAAGTGGTGTCCG    100
                     ||||||.||.||||||||||||||||||||.|||..||||||.|..||||
BL01421___msr     51 TATGGTCAAGCCTTTTGACGAACAGCCGGGCATTCTAAAAGTCGAATCCG    100

BSNT_03236___    101 GGTATACAGGCGGCCATACTGAAAACCCTACGTATGAAGAGGTGTGCAGT    150
                     |.|||||.|||||||||||.|||||.||.||.|||||||||||||||||.
BL01421___msr    101 GCTATACCGGCGGCCATACGGAAAATCCGACCTATGAAGAGGTGTGCAGC    150

BSNT_03236___    151 GAAACGACGGGACATCGTGAAGCCGTTCAAATCACGTTTAATCCTGATGT    200
                     .|.||.|||||||||.|.|||||.||.||||||||.|||.||||.|||||
BL01421___msr    151 AATACAACGGGACATAGGGAAGCGGTGCAAATCACATTTGATCCCGATGT    200

BSNT_03236___    201 ATTCCCTTATGAAAAACTGCTTGAATTATTTTGGCAGCAAATCGATCC--    248
                     .||.||.||.|||||||||||.|||.|.|..|||||||||||||||||  
BL01421___msr    201 CTTTCCATACGAAAAACTGCTGGAACTCTACTGGCAGCAAATCGATCCCA    250

BSNT_03236___    249 --GACAGATGCCGGGGGGCAATTTGCTGATCGCGGCAG-TTCCTATCGCG    295
                       |||||    |||.||.|||||..|.||.||||| || .||.||.||..
BL01421___msr    251 CTGACAG----CGGAGGACAATTCACAGACCGCGG-AGAGTCTTACCGGA    295

BSNT_03236___    296 CAGCCATTTTTTATCATAATGATAAACA----AAAGGAGCTTGCGGAAGC    341
                     ||||.||||||||.||||||||.||.||    |||    ||.||.||||.
BL01421___msr    296 CAGCGATTTTTTACCATAATGACAAGCAGCGGAAA----CTCGCTGAAGA    341

BSNT_03236___    342 TTCCAAGCAACGTCTGGCTGAAAGCGGCATCTTTAAAGATCCGATTGTAA    391
                     .||.|||.||...||.|..|||||||||||||||||||||||.||.|..|
BL01421___msr    342 ATCGAAGAAAAAGCTCGGAGAAAGCGGCATCTTTAAAGATCCAATCGCGA    391

BSNT_03236___    392 CGGACATTTTAAAAGCTGAACCTTTCTATGAAGCGGAAGGCTACCATCAG    441
                     |.||||||.|..|.||.|..||.||.|||...||.||.|..||.||.|||
BL01421___msr    392 CCGACATTCTGGAGGCCGGGCCATTTTATCCGGCTGAGGAGTATCACCAG    441

BSNT_03236___    442 CATTTTTATAAAAAGAATCCAG---------CACATTATCAGCGCTACCG    482
                     .|.|.|.||||||||.|.||.|         ||||.||||.|    |.||
BL01421___msr    442 GACTATCATAAAAAGCACCCTGAACGCTACACACAGTATCGG----ATCG    487

BSNT_03236___    483 GACAGGTTCCGGACGTGCGGGGTTTAT-CAGTGAGCATTGGGGGGCTA--    529
                     || ||    ||||.|.|..||.|||.| || ..|||||| ||||||.|  
BL01421___msr    488 GA-AG----CGGAAGGGAAGGATTTTTACA-ACAGCATT-GGGGGCGAAA    530

BSNT_03236___    530 -----------AATAA    534
                                |||||
BL01421___msr    531 GCATGACGAACAATAA    546


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