Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05887 and BL01413
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:58
# Commandline: needle
# -asequence dna-align/BSNT_05887___menA.1.5803.seq
# -bsequence dna-align/BL01413___menA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05887___menA-BL01413___menA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05887___menA-BL01413___menA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05887___menA
# 2: BL01413___menA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity: 603/1007 (59.9%)
# Similarity: 603/1007 (59.9%)
# Gaps: 196/1007 (19.5%)
# Score: 1768.0
#
#
#=======================================
BSNT_05887___ 0 -------------------------------------------------- 0
BL01413___men 1 ATGCAGCATCAATCACTTTCAGGGAGTGTTTCTGAAATAAAGCCGGAAAA 50
BSNT_05887___ 1 ATGGGGCAGATCCTTTGGCAGTTAACCCGTCCTCATACGTTAACCGCATC 50
||||.||..|| ..|||..||||||..|.||.|||||..|.||.||..|
BL01413___men 51 ATGGCGCGTAT--GGTGGATGTTAACAAGACCCCATACACTGACAGCCGC 98
BSNT_05887___ 51 GTTTGTGCCTGTGCTGCTCGGAACCGTTTTGGCGATGT---TT---TATG 94
.|||||.|||||...||||||.||||| ||||| || |..|
BL01413___men 99 CTTTGTCCCTGTAACGCTCGGGACCGT------GATGTCCCTTGAATCGG 142
BSNT_05887___ 95 TGAAGGTTG--ATCTGCTGCTGTTTTTGGCTATGCTGTTTTCTTGCC--- 139
.|||..||| ||||| |||||||||.||||||||| |||
BL01413___men 143 GGAAAATTGACATCTG--GCTGTTTTTAGCTATGCTG-------GCCGCA 183
BSNT_05887___ 140 ----TATGGATCCAGATCGCGACGAACTTATTTAATGAATATTATGATTT 185
|||.|||.||.||||..|||||||||||.|||||.||||.||||||
BL01413___men 184 TCAATATTGATTCAAATCGGAACGAACTTATTCAATGAGTATTTTGATTT 233
BSNT_05887___ 186 TAAACGCGGATTAGATACAGCAGAATCAGTCGGAATCGGAGGGGCAATTG 235
|..|.|.|||.|.||||..|.|.|.||.|||||.||||||||.||.||.|
BL01413___men 234 TGTAAGAGGACTTGATAATGAAAACTCGGTCGGCATCGGAGGCGCTATCG 283
BSNT_05887___ 236 TACGCCACGGAATGAAGCCTAAAACGATTTTGCAATTAGCTCTGGCATCA 285
|.|||.|.||||||||.||.||.|||.|| |||...|||| ||
BL01413___men 284 TCCGCTATGGAATGAAACCGAAGACGGTT------TTATACCTGG---CA 324
BSNT_05887___ 286 TACGG---GATT------GCCATTTTGCTCGGTGTCTATATTTGTGC--G 324
||||| |.|| |||.||||.|||||.||.||.||.||.|| .
BL01413___men 325 TACGGACTGTTTGGAGCAGCCGTTTTACTCGGCGTGTACATCTGCGCTTC 374
BSNT_05887___ 325 AGCAGCAGCTGGTGGCTTGCGCTGATCGGCCTTGTCGGCATGGCGATCGG 374
..|| |||||||||||||||||||||||..|.||..|||||||..||||
BL01413___men 375 TTCA--AGCTGGTGGCTTGCGCTGATCGGATTGGTTTGCATGGCCGTCGG 422
BSNT_05887___ 375 CTACCTGTATACAGGCGGGCCGCTGCCGATTGCGTACACGCCGTTCGGTG 424
|||.||.|||||.|||||||||.|.|||||..|.||.||||||||.||||
BL01413___men 423 CTATCTTTATACGGGCGGGCCGTTTCCGATCTCCTATACGCCGTTTGGTG 472
BSNT_05887___ 425 -AATTATTCTCAGGCATTTGCATGGGTTCGGTGTTTGTGCTGATTTCGTT 473
||||| |.||||||.|||..|||||...|||..|..|.||||||||.|.
BL01413___men 473 AAATTA-TGTCAGGCGTTTTTATGGGAATGGTCATCATCCTGATTTCATA 521
BSNT_05887___ 474 TTTCATTCAGACAGATATGATCAACACGCAAAG-CATTTTGATTTCCATC 522
.|..|||||.||.|....|.| .||..|.||.| |.||.||||.|||.|.
BL01413___men 522 CTATATTCAAACCGGCGGGCT-GACTTGGAACGTCTTTCTGATCTCCCTT 570
BSNT_05887___ 523 CCGATTGCGATTCTTGTCGGCGCGATTAATTTGTCAAACAACATTCGCGA 572
||||||.|||||.|.|||||.|..||.|||.|.||.|||||.||.|||||
BL01413___men 571 CCGATTACGATTTTAGTCGGAGGCATCAATCTTTCCAACAATATCCGCGA 620
BSNT_05887___ 573 TATTGAAGAGGACAAAAAAGGCGGCCGCAAAACATTGGCGATTTTGATGG 622
|.|.|..|..||.|||.||..|||..|.||.||..|..||||||| |
BL01413___men 621 TTTGGTCGGAGATAAAGAAAACGGAAGGAAGACGCTTCCGATTTT----G 666
BSNT_05887___ 623 GGCATAAG------------GGAGCTGTTACTCTGTTAGCTGCGTCGTTT 660
|.|..||| |.||.|.||| |||||.|| .|||
BL01413___men 667 GCCGGAAGAAAAAACGCCGTGCAGATTTTA-------AGCTGGGT-TTTT 708
BSNT_05887___ 661 GCCGTCGCTTATATCTGGGTTG---------TCGGCTTGGTTA----TTA 697
||.||..|.|||||.|.|.|.| |||||||.|..| ||.
BL01413___men 709 GCTGTTTCCTATATATTGATCGGTATATACATCGGCTTTGAGATCGTTTC 758
BSNT_05887___ 698 CCGGTGCCGCAAGCCCATGGCTGTTTGTCGTCTTTTTGAGCGTGCCTAAG 747
.|.|||..|| ||.| ||||..||||.|||.|||||||.
BL01413___men 759 TCTGTGGAGC-------TGCC------TCGTTCTTTTAAGCCTGCCTAAA 795
BSNT_05887___ 748 CCGGTT---------CAGGCAGTGAAGGGCTTCGTCCAAAAAGAAATGCC 788
|||.|| |||| |||..|.||| ||||||||.|||
BL01413___men 796 CCGATTAAAGCCATCCAGG-AGTTCAAGGC--------AAAAGAAAAGCC 836
BSNT_05887___ 789 GATGAATA--TGATTGTCGCAATGAAATCAACAGCCCAAACAAATACATT 836
| |.|.| ||||.|||||.||||||||.||.||.||.||.||.||.||
BL01413___men 837 G--GCAGAACTGATGGTCGCCATGAAATCGACTGCGCAGACGAACACCTT 884
BSNT_05887___ 837 TTTCGGATTCCTGCTTTCGATCG----GATTATTGATCAGCTA----TTT 878
||||||..|.|||||..|.|||| |.|||| |||| || |||
BL01413___men 885 TTTCGGCCTTCTGCTCGCCATCGCCCTGCTTAT---TCAG-TACGTTTTT 930
BSNT_05887___ 879 CCGATAA 885
|||
BL01413___men 931 ----TAA 933
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