Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03778 and BL01408
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_03778___yqfD.1.5803.seq
# -bsequence dna-align/BL01408___yqfD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03778___yqfD-BL01408___yqfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03778___yqfD-BL01408___yqfD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03778___yqfD
# 2: BL01408___yqfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1230
# Identity: 872/1230 (70.9%)
# Similarity: 872/1230 (70.9%)
# Gaps: 66/1230 ( 5.4%)
# Score: 2978.5
#
#
#=======================================
BSNT_03778___ 1 GTGAAAAATAAATGGCTGTCTTTTTTTTCGGGTAAGGTCCAGCTTGAATT 50
|||||.|||||||||||.|||||||||||.||.|||.||||||||.|..|
BL01408___yqf 1 GTGAAGAATAAATGGCTTTCTTTTTTTTCAGGAAAGATCCAGCTTAAGAT 50
BSNT_03778___ 51 GACGGGAAGAGGGATTGAGCGGCTCCTTAATGAATGCACAAGACAGGGG- 99
.|||||||.||||||.||.|||.|..|.||||||||||| ||||.|
BL01408___yqf 51 AACGGGAAAAGGGATCGAACGGTTATTAAATGAATGCAC----CAGGCGC 96
BSNT_03778___ 100 ---ATTCCGGTCTTTCATGTCAAAAAAAAGAAAGAAGCCGTATCGTTATA 146
||.|||.|.|||.||||.||.|||||||||||.|||||.|...|.||
BL01408___yqf 97 AACATCCCGATGTTTAATGTAAAGAAAAAGAAAGACGCCGTCTTTCTTTA 146
BSNT_03778___ 147 TATACAGCTTCAGGATGTACATGCCTTTCGGCGGGTGAGAAGTAAATTTA 196
|||.|.||||...||||||||||||||.|||..|||.|..||....||..
BL01408___yqf 147 TATTCCGCTTTCTGATGTACATGCCTTCCGGAAGGTCATCAGAGGCTTCG 196
BSNT_03778___ 197 AATGTAAAGCCCGATTTATCCATCGGAAGGGTTTTCCCTTCCTGTTGCTG 246
|.||.||...|.|.||.|||.|.||.||.||.|||||.|||||..|||.|
BL01408___yqf 197 ACTGCAAGTGCAGGTTCATCAAACGAAAAGGGTTTCCTTTCCTCGTGCAG 246
BSNT_03778___ 247 AAATCAAAGCTGAATATAGGGTTTACGATCGGTTTTGC--GATTTTTT-T 293
||.||.||.|.|||||..||.||.||..|.||..|||| .||||||| |
BL01408___yqf 247 AAGTCTAAACGGAATAGCGGCTTCACTTTTGGAGTTGCTGCATTTTTTAT 296
BSNT_03778___ 294 CATCCTTTTGTTTTTGCTGTCCAATATGGTGTGGAAAATTGATGTGACAG 343
|||| .||||..|..|||||||.|||.|.||||||||||||.|.||||
BL01408___yqf 297 CATC---ATGTTCCTATTGTCCAACATGCTTTGGAAAATTGATATTACAG 343
BSNT_03778___ 344 GCGCTAAGCCTGAAACAGAACATCAAATGAGGCAGCATCTTAATGAAATC 393
|.||.||.||.||.||||||||||||||.||.|||||..|..||.|||||
BL01408___yqf 344 GAGCCAATCCAGAGACAGAACATCAAATCAGACAGCAATTGGATCAAATC 393
BSNT_03778___ 394 GGCGTCAAAAAGGGCCGTCTGCAGTTTTTAATGATGTCGCCCGAAAAAAT 443
|||||||||||.|||||..|.|||||||.||||.||.|.||.||||||||
BL01408___yqf 394 GGCGTCAAAAAAGGCCGCTTTCAGTTTTCAATGCTGACCCCGGAAAAAAT 443
BSNT_03778___ 444 ACAGAAATCATTAACCAATGGAATAGACAATATCACTTGGGTCGGAGTTG 493
.|||.|..|..|.||.||..|..|.||.||.|||||||||||.||..|||
BL01408___yqf 444 TCAGCAGGCGCTCACAAAGCGGGTCGAAAACATCACTTGGGTGGGCATTG 493
BSNT_03778___ 494 ATCTGAAGGGGACGACCATTCACATGAAAGTTGTGGAGAAAAATGAGCCC 543
|..|.||.||.||..||.|||||||||||||.||.||.||.|||||.||.
BL01408___yqf 494 AGTTAAACGGTACCGCCCTTCACATGAAAGTCGTTGAAAAGAATGAACCT 543
BSNT_03778___ 544 GAAAAAGAAAAGTATGTTAGCCCGCGCAATATTGTCGCCAAAAAGAAAGC 593
||.||||||||.|||.|..|.|||.|..|.||.|||||||||||....||
BL01408___yqf 544 GACAAAGAAAAATATATCGGTCCGAGGCACATCGTCGCCAAAAAAGGGGC 593
BSNT_03778___ 594 AACCATTACGAGAATGTTTGTGCAAAAAGGACAGCCCATGGC-CGCCA-- 640
.|||||..|||.||||||.|||.|||||||..|||| || ||.||
BL01408___yqf 594 GACCATCTCGAAAATGTTCGTGGAAAAAGGCGAGCC----GCTCGTCACG 639
BSNT_03778___ 641 -TACACGATCATGTTGAAAAGGGGCAGCTGCTTGTTTCGGGACTGATCGG 689
|..||.|.||.||||||||.|||||..||||.|||||.||.||||||||
BL01408___yqf 640 GTGAACCAGCACGTTGAAAAAGGGCAAATGCTCGTTTCCGGGCTGATCGG 689
BSNT_03778___ 690 CAGCGAAGACCATCAGCAGGAAGTCGCCTCAAAAGCAGAAATTTACGGAG 739
.||||||||..|..||||..||||||...||||||...||||.||.||.|
BL01408___yqf 690 AAGCGAAGAGGAAAAGCAAAAAGTCGGAGCAAAAGGGAAAATCTATGGTG 739
BSNT_03778___ 740 AAACCTGGTATAGATCAGAAGTGACAGTCCCGCTTGAAACATTATTTAAC 789
||||||||||.|..|||..|||.||.||.||.|||||.||||.||||.||
BL01408___yqf 740 AAACCTGGTACAAGTCAACAGTAACGGTTCCTCTTGAGACATCATTTGAC 789
BSNT_03778___ 790 GTCTATACGGGCAAAGTAAGGACAAAGCACAAGCTTTCTTTTGGTTCTTT 839
||.|.||||||.|||||||||||||..||||||||.||..|.||.||.||
BL01408___yqf 790 GTTTTTACGGGTAAAGTAAGGACAAGTCACAAGCTATCCCTCGGATCATT 839
BSNT_03778___ 840 GGCAATCCCGATCTGGGGGATGACGTTTAAAAAAGAGGAATTGAAGCATC 889
..|..|.|||||||||||..|..|.|||||||||||.||.||...||..|
BL01408___yqf 840 TTCCGTGCCGATCTGGGGCTTTTCATTTAAAAAAGAAGACTTCTCGCGCC 889
BSNT_03778___ 890 CAAAAAC--AGAACAAGAAAAGCATTCGCTTCATTTTCTCGGA--TTTAA 935
|.||.|| |||.| |||||.||.|||||.||||||.| || |||||
BL01408___yqf 890 CGAAGACGGAGACC--GAAAAACACTCGCTGCATTTTAT--GAATTTTAA 935
BSNT_03778___ 936 GCTCCCTGTATCCTATGTCAAAGAGCAAACGAGAGAAAGTGAAGAGGCTT 985
|||.|||||..|.||||..||.|||||.|.|||.||.||.|||
BL01408___yqf 936 GCTTCCTGTCGCTTATGAAAAGGAGCATATGAGGGAGAGCGAA------- 978
BSNT_03778___ 986 TGC----GAAAA-----TATACGAAAGAAGAAGCAGTTCAAGAAGGCATT 1026
| .|||| ||..|||||.||||||||||||..|||||.||.
BL01408___yqf 979 --CAAATCAAAAGGGTGTACTCGAAAAAAGAAGCAGTTCTTGAAGGAATC 1026
BSNT_03778___ 1027 AAATTGGGTAAA--------CAGGATGTAGAGGATAAAATAGGCGAAAAC 1068
.||.||||.||| ||||| |.|||||.|||..|.||
BL01408___yqf 1027 GAAATGGGAAAAAGAGACATCAGGA--------AAAAAATCGGCAGAGAC 1068
BSNT_03778___ 1069 GGCGAGGTGAAAAGTGAAAAAGTTTTGCACCAGACTGTTGAGAATGGTAA 1118
||..|..|.|..||||||||||||||||||.|.||....|||||||||||
BL01408___yqf 1069 GGGAACATTATCAGTGAAAAAGTTTTGCACGAAACGAGCGAGAATGGTAA 1118
BSNT_03778___ 1119 AGTAAAGTTGATTATTCTCTACCAAGTTATAGAAGATATCGTTCAAACCA 1168
|||.||.|||||.||.||.|||||.|||||.|||.|.||.||||||||.|
BL01408___yqf 1119 AGTTAAATTGATCATCCTTTACCAGGTTATTGAAAACATTGTTCAAACAA 1168
BSNT_03778___ 1169 CACCTATTG-TCAGGGAGACTGAAGAATGA 1197
||||.|||| ||| |||||||.||||||||
BL01408___yqf 1169 CACCAATTGTTCA-GGAGACTAAAGAATGA 1197
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