Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01857 and BL01388
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01857___yisY.1.5803.seq
# -bsequence dna-align/BL01388___yisY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01857___yisY-BL01388___yisY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01857___yisY-BL01388___yisY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01857___yisY
# 2: BL01388___yisY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 927
# Identity: 488/927 (52.6%)
# Similarity: 488/927 (52.6%)
# Gaps: 264/927 (28.5%)
# Score: 1127.0
#
#
#=======================================
BSNT_01857___ 1 ATGGGGCATTACAT-----CAAAACCGAGGAGCATGTGACACTGTTTGTA 45
|||||..|||..|| ||.||||.|| .||.|..||||..||.
BL01388___yis 1 ATGGGATATTTTATCGAGGCAGAACCAAG-----CGTTAATCTGTACGTT 45
BSNT_01857___ 46 GAGGATATCGGACAT-------GGAAGGCCGATCATCTTTTTGCACGGGT 88
||.||.|||...|.| |.||.||| ||..|.|||||||||||.|
BL01388___yis 46 GAAGACATCAATCCTCAAAGCGGCAAAGCC-ATTGTATTTTTGCACGGCT 94
BSNT_01857___ 89 GGCCGTTGAATCAT----AAGATGTTTGAATATCAAATGAATGAGCTTCC 134
||||.||.|..||| | |||||||||||||.|..|.||.|||.|
BL01388___yis 95 GGCCATTAAGCCATCTCCA----GTTTGAATATCAATTTGACGATCTTTC 140
BSNT_01857___ 135 GAAAAGGGGATTTCGTTTTATCGGCGTTGATTTGCGGGGATATGGGCAAT 184
|..||.|||||..||.|.|||||||.||||.|.|||.||||..||||..|
BL01388___yis 141 GCGAAAGGGATACCGCTGTATCGGCATTGACTGGCGTGGATTCGGGCGTT 190
BSNT_01857___ 185 CTGA----CCGCCCTTGGGA-AGGCTACGATTATGACACG-ATGGCCGAT 228
|.|| ||| |.|| .|||||..||||..|| || .||||.|||
BL01388___yis 191 CGGATAAGCCG-----GCGACGGGCTATAATTACAAC-CGTTTGGCTGAT 234
BSNT_01857___ 229 GATGTGAAAGCAGTCATTTATACGCT--------GCAGCTTGAGAATGCG 270
|||.|....||.|||.||.|..|||| .||.|||.| ||
BL01388___yis 235 GATATCCGCGCTGTCGTTGAGGCGCTTCAATTAAACAACTTCA-----CG 279
BSNT_01857___ 271 ATTCTCGCCGGTTTTTCAATGGGCGGCGCCATTGCAATTCGTTATATGGC 320
||.||||||..|||||..|||||||||||.|||.|.||.||||||.|
BL01388___yis 280 ---CTTGCCGGTCATTCAACCGGCGGCGCCATAGCACTCCGCTATATGTC 326
BSNT_01857___ 321 AAGGCATGAAGGAGCCGATAT---------------TGATAAGCTGATTT 355
||||||| |.| ||||||.|||
BL01388___yis 327 --------------CCGATATAGGGGCGCTGGGGTCTCA-AAGCTGGTTT 361
BSNT_01857___ 356 TACTGTCTGCAGCGGCCCCCGCG---TTTACAAAACGCCCGGGTTATCCG 402
|..|...|||.|||||.||.|.| |||||
BL01388___yis 362 TGATCGATGCGGCGGCGCCTGTGGGATTTAC------------------- 392
BSNT_01857___ 403 TACGGGATGAGGAA---GCAGGATATTGACGATATGATTGAATTG-TTCA 448
|||.||| |||| |.| ||||| ||||
BL01388___yis 393 -------TGAAGAAACGGCAG--------CCA--------AATTGCTTCA 419
BSNT_01857___ 449 --AAACG------GATCGGCCCAAAACACTGGCTGAT--------TTAGG 482
||.|| |||||.||||| |.|||| |.|..
BL01388___yis 420 GCAAGCGTCTAACGATCGTCCCAA-------GATGATGCGCGAAGTGACC 462
BSNT_01857___ 483 GAAACAGTTTTT-----------TGAGAAAAAAGTGTCTCCAGAGCTTAG 521
||.|| |||||| |.|.|.||..|| |||| ||
BL01388___yis 463 GACAC-GTTTTTCTTTCAATATATTACACAACCGT-TCTC--------AG 502
BSNT_01857___ 522 GCAGTGGTTTCTCAATCTG-------ATGCTGGAGGCTTCCTCCTACGGG 564
.|.|| .|||.||||| || |.||.|.||||| ||
BL01388___yis 503 ACTGT-TTTTTTCAAT-TGGGATTGCAGGCGGCAGGCT----------GG 540
BSNT_01857___ 565 ACGATCCACTCGGGCATCGCA---TTAAGAGACGAAGATC---------- 601
.|||...|..|||.|||||.| .|.|||||.||..|.|
BL01388___yis 541 TCGACAAAAGCGGTCATCGAAATGCTGAGAGATGAGAAACTGTATGATGA 590
BSNT_01857___ 602 TCAGGAAGGAACTTGCTGCAATCAAGGTGCCGACGCTGATCCTGCACGGG 651
||.|||| .||.|.||||| ||.|| |..|.|||.|.|||||.
BL01388___yis 591 TCCGGAA-AAAGTCGCTGC--TCCAG-------CCTTAATCATTCACGGT 630
BSNT_01857___ 652 AGAAAGGATAA---AATTGCGCCGTTTG----ATTTTGCGAAAGAGTTGA 694
|...|.||.|| .||| ||||||| | ||.||.|||.|.|
BL01388___yis 631 ATTCAAGACAAGGTGATT---CCGTTTGCACAA----GCAAAGGAGCTCA 673
BSNT_01857___ 695 AGCGCGGCATCAAACAGTCGGAATTGGTTCCGTTTGCAA-ACAGCGGGCA 743
..|||...||||.|.|.||..|..|.||||||||| ||| |||||||.||
BL01388___yis 674 GCCGCAAAATCAGAAATTCATATCTTGTTCCGTTT-CAATACAGCGGACA 722
BSNT_01857___ 744 CGGAGCATTTTATGAGGAA---AAAGAGAAGATCAACAGTTTGATT---G 787
|||..||||.|..|||||| ||| |.|.|||| |..|||| .
BL01388___yis 723 CGGTCCATTCTGGGAGGAACGCAAA---ATGTTCAA---TCGGATTTTAA 766
BSNT_01857___ 788 CGCAGTTCTCCAACTCATAA------- 807
||||.|| ||.
BL01388___yis 767 CGCAATT----------TATCGGTTGA 783
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