Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03558 and BL01386
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_03558.1.5803.seq
# -bsequence dna-align/BL01386___yqjD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03558-BL01386___yqjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03558-BL01386___yqjD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03558
# 2: BL01386___yqjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1605
# Identity: 790/1605 (49.2%)
# Similarity: 790/1605 (49.2%)
# Gaps: 555/1605 (34.6%)
# Score: 2327.0
#
#
#=======================================
BSNT_03558 0 -------------------------------------------------- 0
BL01386___yqj 1 ATGAATATGTTTGAAAGAGTCGACGATTTAAACAACAGCCGCCAAAAAGC 50
BSNT_03558 0 -------------------------------------------------- 0
BL01386___yqj 51 TTCGCTCGGAGGCGGCCAGGAACGGATCGACAGGCAGAAGCAAAAAGGCA 100
BSNT_03558 0 -------------------------------------------------- 0
BL01386___yqj 101 AGCTCACCGCCAGAGAACGAATTGATCTTCTGCTTGATGAGGGGACGTTC 150
BSNT_03558 0 -------------------------------------------------- 0
BL01386___yqj 151 ACTGAACTGAATGCCTTTGCCAGAAGCCGGCAGTCCGGCGGCCCGTTAGG 200
BSNT_03558 0 -------------------------------------------------- 0
BL01386___yqj 201 CGACGGGGTTGTCACGGGATTCGGAAAGATCGACGGGCGGCCCGTTTATC 250
BSNT_03558 0 -------------------------------------------------- 0
BL01386___yqj 251 TATTTTCCCAGGATTTTACCGTCACCGGCGGAGCGCTCGGAGAAATGCAC 300
BSNT_03558 0 -------------------------------------------------- 0
BL01386___yqj 301 GCCAAAAAAATAGCGGCCGTCATGGATCTTGCCCTCAAAAATAAGGCGCC 350
BSNT_03558 1 ----------------------------------------------GTGG 4
|||.
BL01386___yqj 351 GTTCATCGGTCTGAACGACTCAGGTGGTGCGAGAATTCAAGAGGGTGTGC 400
BSNT_03558 5 TATCATTAGATGGATACGGTCACATATTTTACCGAAACGTCTTATATTCC 54
||||||||||||||||||||||.||.|||||||||||.|||.|.|..||.
BL01386___yqj 401 TATCATTAGATGGATACGGTCATATTTTTTACCGAAATGTCCTTTGCTCA 450
BSNT_03558 55 GGAGTCATTCCGCAAATATCGGTTATTTTAGGGCCGTGCGCTGGAGGCGC 104
||..|||||||||||||.||.||.|||.|.||.||.||.||.||.|||||
BL01386___yqj 451 GGCATCATTCCGCAAATCTCTGTCATTCTCGGCCCTTGTGCGGGCGGCGC 500
BSNT_03558 105 TGTATATTCTCCGGCACTCACAGATTTTATATTTATG-GCTGAACAGACC 153
.||.|||||.||.||..|.||.||.||..|.||.||| || |||.|.|||
BL01386___yqj 501 GGTTTATTCCCCCGCTTTGACCGACTTCGTTTTCATGAGC-GAAAAAACC 549
BSNT_03558 154 GGCCGGATGTTTATTACCGGCCCGAAGGTGATTGAAAAAGTGACAGGGGA 203
||.|.|||||||||||||||.|||||.||.||..|||..|.||||||.|
BL01386___yqj 550 GGACAGATGTTTATTACCGGTCCGAAAGTCATCAAAACGGCGACAGGCG- 598
BSNT_03558 204 ACAGGTT----GATGCGGAGAGCTTAGGCGGAGCGGGGATACATAATGCC 249
|||.| |.|.|||.|| .||.||.||.||....|||||||||.|.
BL01386___yqj 599 --AGGCTGTCAGCTCCGGTGA-ATTGGGGGGCGCCTATATACATAATTCA 645
BSNT_03558 250 GTCAGCGGAAACGCGCACTTTTCCGGACATACGGAGAAGGAGGTTCTGAC 299
.|||||||.||.||.||.||||||||..||.|.||..|||..||.|| .|
BL01386___yqj 646 ATCAGCGGGAATGCCCATTTTTCCGGGGATTCCGATGAGGCCGTCCT-CC 694
BSNT_03558 300 A-GGGGTGAGAAAACTGCTGTCTTATTTGCCGCTGAATGGC-CGGACAAC 347
| |.||||.|.||.||..||||.||..|.|..|.|||| | ||.|.||.
BL01386___yqj 695 ATGAGGTGCGCAAGCTCTTGTCCTACATCCTCCAGAAT--CACGAAGAAA 742
BSNT_03558 348 AG-----AGCCGAAGCCAGA-----GAAAGAGGCGTCCAGACCGTTA--- 384
|| .|||.|.||.||| |||||| ||..|| |.||
BL01386___yqj 743 AGCCTCCCGCCAAGGCGAGAAAGGCGAAAGA----TCATGA--GATAAGG 786
BSNT_03558 385 ------TTAA--ACCGTCTTGTCCCTGCTGATACGACAAAG--------- 417
|||| ||..||.|| |||| |||
BL01386___yqj 787 CCTGCTTTAATGACGATCCTG--CCTG-----------AAGACGGTCAGC 823
BSNT_03558 418 --CCTTATGATGTTCGGA-AGGTGATCAGGGAGCTGGCCGACCCGCAG-A 463
||.|||||.| ||..| ||.|.|||..|||..|.||.|| |.||.| |
BL01386___yqj 824 GTCCGTATGACG-TCAAACAGATCATCGCGGAAATCGCAGA-CGGCGGAA 871
BSNT_03558 464 CTTTTTTTGAGCTTCA--GCCATTTTTTGCGAAGAACATTGTCATTGGGT 511
|.||||||||..|.|| |||| ||||||.||.|||...||.||.||.|
BL01386___yqj 872 CATTTTTTGAAGTGCAGTGCCA--TTTTGCCAAAAACGCGGTGATCGGTT 919
BSNT_03558 512 TTGCAAGGCT---GGGTGAAAAAGCAATCGGC-ATCGTGGCGAGCCAGCC 557
||||||||.| |||.||||..| |||| .|||||||.|.||||||
BL01386___yqj 920 TTGCAAGGATAGCGGGGGAAACGG----CGGCGGTCGTGGCCAACCAGCC 965
BSNT_03558 558 GAAGCATCTGGCGGGAAGCCTGACGATTGACGCTGCTGATAAAGCAGCAA 607
||||.||.|.||.||||||||.|..||.||.||.|||||.|||...||..
BL01386___yqj 966 GAAGTATTTAGCCGGAAGCCTCAGCATGGATGCGGCTGACAAAATCGCCC 1015
BSNT_03558 608 GGTTCATCCGTTTTTGTGACGCATTTGATATCCCGTTGTTGACTGTCGAA 657
||||.|||||||||||.||..|.|||.|.||||||.|.||||||.|.|..
BL01386___yqj 1016 GGTTTATCCGTTTTTGCGATTCCTTTCAGATCCCGATTTTGACTTTGGTT 1065
BSNT_03558 658 GA-TGTCCCGGGGTTTCTGCCGGGTATTCAGC-AAGAGCACAACGGAATC 705
|| |||||| ||.|||||.|||||.||.| || ||||||||..|||..|.
BL01386___yqj 1066 GATTGTCCC-GGTTTTCTTCCGGGAATAC-GCGAAGAGCACGGCGGGGTG 1113
BSNT_03558 706 ATCAGGCATGGAGCAAAATTATTGTTT--GCTTATGCTGAAGCGACTGTC 753
||||||||.||.||.||| ||..||| ||.|||||.|||||.||||||
BL01386___yqj 1114 ATCAGGCACGGCGCCAAA--ATCCTTTACGCGTATGCGGAAGCCACTGTC 1161
BSNT_03558 754 CCAAAAGTCACACTCATCATTAGAAAAGCGTACGGCGGCGCCTATGTGGC 803
...||.||.||..||||..|.||||||||.||||||||.||.|||||.||
BL01386___yqj 1162 AGCAAGGTGACGGTCATTTTAAGAAAAGCATACGGCGGAGCATATGTCGC 1211
BSNT_03558 804 CATGAACAGCAAAGCGATCGGAGCGGA--CCTTGTGTTTGCATGGCCGAA 851
..|.||||||||.|||.|.|||||||| || ||||||||.||||||||
BL01386___yqj 1212 TTTAAACAGCAAGGCGCTTGGAGCGGATGCC--GTGTTTGCGTGGCCGAA 1259
BSNT_03558 852 TGCTGAAATCGCAGTGATGGGTC----CAGAAGGTGCGGCATCGATTTTG 897
|||.|||||.||||||||||| | |.||||.|||.| .|| |..||
BL01386___yqj 1260 TGCAGAAATTGCAGTGATGGG-CGCCTCGGAAGCTGCAG--ACG-TGCTG 1305
BSNT_03558 898 TATGAAAAGGAAATCAAAGCTTCAGCTGACCCGCAAAAGACGAAACGC-- 945
|.||..|||||||||.||...||||..|||||| ||...|||
BL01386___yqj 1306 TTTGCGAAGGAAATCGAACGGTCAGACGACCCG-------CGGGCCGCCC 1348
BSNT_03558 946 -----GAAAAAA-CAGCTGAA-TACAAAAAG----CAAAACGCCGGCCCA 984
||||||| | |.||| |.||...|| ||| ||||.
BL01386___yqj 1349 GGGAGGAAAAAATC--CGGAAGTGCATGCAGGCTTCAA-------GCCCT 1389
BSNT_03558 985 TACAAAGCGGCCGCT------TGTGGAATGGTCGATGACATCATTTTGCC 1028
|..| ||||| |..||.|||||.||.||.|||||....||
BL01386___yqj 1390 TTTA------CCGCTGCAAGATACGGCATGGTTGACGATATCATCGATCC 1433
BSNT_03558 1029 GGAAGAATCAAGGGGA--AAACTGATTCAAGCTTTTCATATGCTTGCACA 1076
|.|||| .|.|.||| ||.|||||.|||.|.|||.|.|||||
BL01386___yqj 1434 GAAAGA--GACGCGGAAGAAGCTGATCCAAACGTTTGACATGCT------ 1475
BSNT_03558 1077 TAAGA-CAGAAGAGA-----GACCGAAAAAAAAGCACGGTAACATACCGC 1120
.|||| ||.||.||| |.|.|.|.||||||||.||.||.|||||||
BL01386___yqj 1476 GAAGAGCAAAAAAGAAATCCGGCTGGACAAAAAGCATGGAAATATACCGC 1525
BSNT_03558 1121 TTTAA 1125
|||||
BL01386___yqj 1526 TTTAA 1530
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