Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03263 and BL01367
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_03263___ypgR.1.5803.seq
# -bsequence dna-align/BL01367___ypgR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03263___ypgR-BL01367___ypgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03263___ypgR-BL01367___ypgR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03263___ypgR
# 2: BL01367___ypgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1177
# Identity: 864/1177 (73.4%)
# Similarity: 864/1177 (73.4%)
# Gaps: 83/1177 ( 7.1%)
# Score: 3094.5
#
#
#=======================================
BSNT_03263___ 1 ATGAAGATAAAATCAATTGAACCTACACCAAGCCCGAATACAATGAAAGT 50
|||||.||.|||||.||.|||||.|||||.||.||||||||||||||.||
BL01367___ypg 1 ATGAAAATTAAATCGATAGAACCGACACCGAGTCCGAATACAATGAAGGT 50
BSNT_03263___ 51 CATCTTAACGGAAGAGCTTCCGGCGGGCAAAAGCAATAACTATAAACCTG 100
.||.||.||.||.||.||.||||..||.|||||||||||.||||||...|
BL01367___ypg 51 GATTTTGACCGAGGAACTGCCGGGTGGAAAAAGCAATAATTATAAAAAGG 100
BSNT_03263___ 101 AGCAAGCAGAAGGCGCACCGCCTGTTATAGAGGAAATTCTTAAA-ATAGA 149
|.||.||.|||||||||||.||.||.||..|||||.|| ||||| |||||
BL01367___ypg 101 ATCATGCGGAAGGCGCACCTCCCGTCATCCAGGAAGTT-TTAAACATAGA 149
BSNT_03263___ 150 TGGAGTTAAAGGGGTATATCACGTCGCAGATTTTCTTGCTGTTGAACGGA 199
.|||||.|||||.||.|||||.||.||.||||||.|.|||||.||.||.|
BL01367___ypg 150 CGGAGTAAAAGGCGTCTATCATGTGGCCGATTTTATCGCTGTCGAGCGCA 199
BSNT_03263___ 200 ATGCAAGATACGACTGGAAAGACATATTACCGCAAGTCCGCACTGCATTT 249
||||.||||..||.|||||||||||..|.||..|.||.|||.|||||||.
BL01367___ypg 200 ATGCGAGATTTGATTGGAAAGACATCCTTCCTAAGGTGCGCGCTGCATTC 249
BSNT_03263___ 250 GGGATGGA--AAGTGCTGA--AAGCGGA----------GAAGAAAATCGT 285
||.||||| || ||.|| |.||||| |||||||
BL01367___ypg 250 GGAATGGATGAA--GCCGAAGAGGCGGAGGGCCGTTCCGAAGAAA----- 292
BSNT_03263___ 286 TCTGATCAAGAATCTTTTGGAGAGGTAAAAGTTTTTGTGCAGATGTTCAG 335
|||||||.||.||.|||||.||||||||.|||||.||||||||
BL01367___ypg 293 -------AAGAATCGTTCGGCGAGGTTAAAGTTTTCGTGCAAATGTTCAG 335
BSNT_03263___ 336 CGGCATTCCTATGCAAGTTAAATTAACCGATGGAGAGCGGGAAGAACGCT 385
|||.||.||.|||||.||.|||||.|||||.||.|||||.||.||.||||
BL01367___ypg 336 CGGAATACCGATGCAGGTGAAATTGACCGACGGCGAGCGCGAGGAGCGCT 385
BSNT_03263___ 386 TCGGCTTACCTGAACGCTTTCAGCAGGCGATCTTAAAACTTAGATCTGAA 435
|||||.|.||.|||||.||.|||.|.||||||||.||.||||.|.|.|..
BL01367___ypg 386 TCGGCCTTCCAGAACGTTTCCAGGAAGCGATCTTGAAGCTTAAAACCGCG 435
BSNT_03263___ 436 GCTTCCAATGTTGTGTTTGAGCGGGCTTGGAAAGAACAAGGTGTCAGATT 485
.|||||||.||.|||.|.||.|||.||||||||||.|||||.||||||||
BL01367___ypg 436 TCTTCCAACGTCGTGCTCGAACGGTCTTGGAAAGAGCAAGGCGTCAGATT 485
BSNT_03263___ 486 CGGTGACTTTGATGAAATCGGCCATGACGTGACAGAAGAGCTTCAGGCGG 535
|||.||.|||...||||||||||..||.||.||.||||||||..||||||
BL01367___ypg 486 CGGCGATTTTTCAGAAATCGGCCGCGAAGTAACGGAAGAGCTGGAGGCGG 535
BSNT_03263___ 536 CATACAGTGATGAACGGCTGAAACG---ACTGACTGAAGCAGCCGC-TCA 581
|.|||..|||.||.||.||| || .|||||.|||.||||.|| |||
BL01367___ypg 536 CTTACGATGAAGAGCGCCTG---CGGAAGCTGACGGAATCAGCTGCATCA 582
BSNT_03263___ 582 AG-GAAAGGGC-GAAGCAAAACAAA---CTGTACAGCGCAAAG-CGTATA 625
|| || .|| ||.||.||||..| ||||.||||| |||| |.||..
BL01367___ypg 583 AGCGA---TGCTGAGGCTAAACGTACGGCTGTGCAGCG-AAAGTCTTACC 628
BSNT_03263___ 626 AAGTAACGCTTGACATGCTGGATGATGAGGACTGGAAAAAGCGTTATGCA 675
..|||||||||||.|||.|||||||.||.||.|||.||||.||.|||||.
BL01367___ypg 629 GGGTAACGCTTGAAATGATGGATGAGGAAGATTGGCAAAAACGCTATGCG 678
BSNT_03263___ 676 CA-CTTGGAACAGATGGATCCGAAAGAAGAGGATATCCCGGTTTTACAGA 724
|| ||| |||||.||||||||.|..|||||||||||.||.||..|..|.|
BL01367___ypg 679 CATCTT-GAACAAATGGATCCTACTGAAGAGGATATTCCAGTACTCGAAA 727
BSNT_03263___ 725 AGGCATTGGATGATCCAAAGGTGTCCATCAGAAGACAGGCTGTTGTGTAC 774
|.||..|..||||.||.||....||.||||||||.|..|||||.||.||.
BL01367___ypg 728 AAGCGCTCAATGACCCGAAAACATCGATCAGAAGGCTTGCTGTCGTTTAT 777
BSNT_03263___ 775 TTAGGGATGATTGAAACACCTGATGTTCTTCCTCTATTGTATAAAGCACT 824
||.||.|||||.|||||.||||..||.|||||.||.||.||||||||.||
BL01367___ypg 778 TTGGGCATGATCGAAACGCCTGCGGTGCTTCCCCTTTTATATAAAGCGCT 827
BSNT_03263___ 825 TGAGGACAAAGCTGTATCA--GTCAGAAGAACGGCCGGAGACTGCCTGTC 872
.||.||||||.| .|||| |||||||||||||||||.||.||.|||||
BL01367___ypg 828 CGAAGACAAAAC--CATCACGGTCAGAAGAACGGCCGGCGATTGTCTGTC 875
BSNT_03263___ 873 TGATATCGGCGATCCTCAAGCCATTCCCGCTATGATCAAGTCG-TTAAGC 921
.||.||||||.|.||..||||.|||||.||.||||||||..|| |.|||
BL01367___ypg 876 AGACATCGGCAACCCGGAAGCGATTCCGGCGATGATCAAAGCGCTGAAG- 924
BSNT_03263___ 922 GACTCC-AGCAAGCTTGTTCGCTGGCGTGCGGCCATGTTCCTGTACGAAG 970
|| ||| |||||||||||.||||||.|.||.||||||||.||||||||||
BL01367___ypg 925 GA-TCCGAGCAAGCTTGTGCGCTGGAGAGCCGCCATGTTTCTGTACGAAG 973
BSNT_03263___ 971 TCGGCGATGAAAGTGCAATTGAAGCTTTGCGCGCT---------GCCGAA 1011
|||||||||||||.|| |||| |.|||| ||.|||
BL01367___ypg 974 TCGGCGATGAAAGCGC-------GCTT--CCCGCTTTAAAAGAAGCTGAA 1014
BSNT_03263___ 1012 GATGACCCCGAATTTGAGGTCAGCCTTCAAGTCAAAATGGCGCTTGAACG 1061
.|.||.||.||||||||.|||||||||||..|||||||||||.|.|||||
BL01367___ypg 1015 AACGATCCGGAATTTGAAGTCAGCCTTCAGATCAAAATGGCGATCGAACG 1064
BSNT_03263___ 1062 TATTGAGCATGGAGAAGAAGCAAAAGGTTCTGTTTGGAAACAAATGACGG 1111
.||.||..|.||.||||||||||||||.||.||.|||||.||||||||||
BL01367___ypg 1065 GATCGAATACGGTGAAGAAGCAAAAGGCTCCGTATGGAAGCAAATGACGG 1114
BSNT_03263___ 1112 AAAGCAGAAAAAAAGGC----GAATAA 1134
|||||.|.|||||||.| ||
BL01367___ypg 1115 AAAGCCGCAAAAAAGACAGCTGA---- 1137
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