Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02055 and BL01362
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_02055___yjfA.1.5803.seq
# -bsequence dna-align/BL01362.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02055___yjfA-BL01362.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02055___yjfA-BL01362.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02055___yjfA
# 2: BL01362
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 497
# Identity: 235/497 (47.3%)
# Similarity: 235/497 (47.3%)
# Gaps: 181/497 (36.4%)
# Score: 614.5
#
#
#=======================================
BSNT_02055___ 1 TTGAAAAGACTGTTTATGAAGGCTTCATTGGTGTTATTCGCAGT-AGTAT 49
||.|.|||| || ||
BL01362 1 -----------------------------------ATGCTCAGTCAG-AT 14
BSNT_02055___ 50 TTGTTTTTGCCGTCAAAGGTGCACCCGCCAAGGCGGAAACCCATGCCTAC 99
| ||| ||.
BL01362 15 T----------------------------AAG---------------TAT 21
BSNT_02055___ 100 GATG-GAAAAAGCCCTTATTACAATG--ATTGTGCGTCCACCGGCTCTAC 146
||.| || ||.||| ||.|| ||||.||.||.|.|||| ||
BL01362 22 GAAGAGA-------CTCATT-CACTGCAATTGCGCTTCAAGCGGC---AC 60
BSNT_02055___ 147 AAAAAAATCCTCAAACTTAG--TGA---ATGCCAGCAATCAAGTCA--TC 189
||.|||..|..||..|..|| ||| ||||.|..|||.|| || ||
BL01362 61 AACAAAGGCGACAGCCAGAGGCTGATAGATGCAAATAATAAA--CAATTC 108
BSNT_02055___ 190 GGAGTAGTCGAGCTTAAATTCAGCAGTACATGTAAAACGGCTTGGGCAAA 239
|||.|.||.|.|.|.|||||||||||....||.|||||.||.|||||.||
BL01362 109 GGAATCGTGGTGTTAAAATTCAGCAGCGTCTGCAAAACAGCATGGGCTAA 158
BSNT_02055___ 240 AATCACGATGAATAATACATTGACGTCTGGCTTTGAAGCAAATGCGGAGA 289
|||.|||.||.|.||..||.||.|.|..|||||.||.|||||||| |.|
BL01362 159 AATGACGCTGGACAAAGCAGTGTCCTTAGGCTTGGAGGCAAATGC--ATA 206
BSNT_02055___ 290 TT--ACCCGAAACACGGACGGAAAGAGATATAATTGTGATTCTGCA---- 333
|| |...|||||||.|||||||| |.||.||.| |||||
BL01362 207 TTTGAAAAGAAACACAGACGGAAA-----AGAACTGAG---CTGCAGCCC 248
BSNT_02055___ 334 ----GGCGGCAATGGAAAAGCGGTGGCCGGCCAAAAGTCTTGCTATACAC 379
||.||.||.|||||||.|.|..|.||.||.|..||.||.|||||||
BL01362 249 GGCTGGAGGAAAAGGAAAAGTGCTCCCGGGGCAGACATCCTGTTATACAC 298
BSNT_02055___ 380 CGATGGTATATGATTTAGATCCAAGGACTTCTTA--CGCTTTCGGCAAGT 427
||||||| ||||||.|||||..|..||||.|| ||.|.|.|
BL01362 299 CGATGGT---TGATTTCGATCCGCGTTCTTCATATGCGATGTAG------ 339
BSNT_02055___ 428 ATTCAGGACCAAACTTAAATGTTTGGGCCACCACAGGCTCTTATTAA 474
BL01362 339 ----------------------------------------------- 339
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