Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01844 and BL01341
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01844___yisR.1.5803.seq
# -bsequence dna-align/BL01341___yisR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01844___yisR-BL01341___yisR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01844___yisR-BL01341___yisR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01844___yisR
# 2: BL01341___yisR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity: 577/929 (62.1%)
# Similarity: 577/929 (62.1%)
# Gaps: 130/929 (14.0%)
# Score: 1637.5
#
#
#=======================================
BSNT_01844___ 1 ATGCCTCGCATCCTGTTTACAGTCCCGCCTTTTCCGGTATTTATCGCAGC 50
|||...|..|||.|.||||||.|.|||||..|.||.||.||.||..|.|.
BL01341___yis 1 ATGGAACATATCATCTTTACAATTCCGCCGCTCCCTGTGTTGATTACCGG 50
BSNT_01844___ 51 TGGGGAAGGGGTTTTTAAAAAAGGAGAAACCCATGTGAAACGTGTATTCT 100
.||.||||||.|.||.||||.|||.||||..|||||||..||||.||..|
BL01341___yis 51 CGGAGAAGGGCTGTTCAAAAGAGGGGAAAAGCATGTGAGGCGTGAATATT 100
BSNT_01844___ 101 CCGTGTTTGATCTGATATATGTCAAACA--GGGAACGTTATATATAACGG 148
|||||||||||||..|||||||.|.||| |||||| |||.|.|.||
BL01341___yis 101 CCGTGTTTGATCTCTTATATGTGATACAGGGGGAAC--TATTTTTGAC-- 146
BSNT_01844___ 149 AAAATGAAACATCGTTTTCTGTTGAAGGCGGCGAG--------------- 183
|||.|.|||||||
BL01341___yis 147 ----------------------TGAGGACGGCGAGCCCCATCAGATCCGG 174
BSNT_01844___ 184 ---------TACATCTTGCTTTCTCCCGGTCTTGAACACTACGGGACGA- 223
||||||.|.|||..|||.||.||.||.||.||.|| |.|
BL01341___yis 175 GAAGGGGAATACATCATCCTTATTCCGGGGCTCGAGCATTATGG--CCAC 222
BSNT_01844___ 224 -AGGGCAGTGATGAAGCAACCTCCTACTATTGGCTTCACTTCGATGAACA 272
..|||.||.|.||.|..|||..|||.|.||||||.|||||..|.||.|
BL01341___yis 223 CGCGGCTGTCAAGACGATACCCGCTATTTTTGGCTGCACTTTCAGGAGC- 271
BSNT_01844___ 273 TCG--ATATGAATTTACG--GCAAAGGGAGG-CAGCAACTGGTCTGAGCT 317
|| .||||..||..|| || ||||||| .|| ||||||.||||.||
BL01341___yis 272 -CGTCCTATGGCTTCGCGCAGC--AGGGAGGTGAG-AACTGGACTGAACT 317
BSNT_01844___ 318 TCAGC--AGGAAAAAGGGAGCTTCGAAGAGCCGGC-------CCGCTACG 358
..||| ||| ||.||||..||.|||..||||.| |...||..
BL01341___yis 318 CAAGCTGAGG--AAGGGGACATTTGAAACGCCGACATTGTATCATTTAAA 365
BSNT_01844___ 359 GATTGGCCTTGCCGAGAAAAGGCAAGGTGCAGCGCCC-----GCAGTTTA 403
|||| ||||||||.||.||| |.||.|| || |||||
BL01341___yis 366 GATT-------CCGAGAAAGGGAAAG----ATCGACCAAAAAGC-GTTTA 403
BSNT_01844___ 404 TGGCGCAGCAGTTTGAAAAGC---TGATCGATTACTCTGCGGAAAACTCT 450
|.|..||||||||| |.|| ||||.||..|.||.||..||||.||.
BL01341___yis 404 TCGAACAGCAGTTT---AGGCGTTTGATTGACGATTCCGCCCAAAATTCC 450
BSNT_01844___ 451 GATTTGCCGCTCAGAAAGCAAATTTTATTTGCGGAGCTGATGCTGCATCT 500
||..|||||||..|.|.|||..|.||.||.|..||||||.||.|.|| ||
BL01341___yis 451 GACCTGCCGCTTCGCAGGCAGCTCTTGTTCGAAGAGCTGCTGATTCA-CT 499
BSNT_01844___ 501 T-CAAAAAGAAGCGTTCCAAATACCGTCTGCGAAAGAGCGGGTAGCCTGG 549
| ||.||.||.||||||||.||.||.||.||||..|||||.|||||.|..
BL01341___yis 500 TGCAGAAGGAGGCGTTCCATATTCCTTCGGCGAGTGAGCGTGTAGCATCC 549
BSNT_01844___ 550 GAGGCGGCCCGGTAC----TTACA-GGA---GCACTATAAGGAAAAGACG 591
||.|| || ||||| .|| .||.||||||||.|||...
BL01341___yis 550 GAAGC--------ACAGCATTACATCGACCGCCATTATAAGGAGAAGCTC 591
BSNT_01844___ 592 ACAATCAAGGATCTGTC-GCTCGCCCTTCACTACCATCAGGATTATGTGA 640
|..||..||.|.||.|| ||| ||||||||.||.||.|||||.||..|.|
BL01341___yis 592 AGCATGGAGCAGCTCTCGGCT-GCCCTTCATTATCACCAGGACTACATTA 640
BSNT_01844___ 641 GCCGCTGTATGCAGCAGGTGCTCGGCGTAACTCCGGCACAATACACGAAC 690
.||||||.|||||..|||||.|.|||.|.||.||||..|||||..|.||.
BL01341___yis 641 CCCGCTGCATGCAAAAGGTGTTTGGCATCACACCGGGCCAATATGCCAAT 690
BSNT_01844___ 691 CGGGTGAGAATGACGGAAGCGAAGCGTCTTTTATCCTCTACAAATGATAA 740
..||.||.|.|....|||||||||||.||..|.||.||||||||.||.||
BL01341___yis 691 AAGGCGAAAGTTTTTGAAGCGAAGCGGCTCCTCTCTTCTACAAACGACAA 740
BSNT_01844___ 741 AATGGGCGTT-----ATTGCGGAAACGGTCGGAATGGAAGATCCGACATA 785
|||| | |||||.|||...||||||||.||.||||||||.||
BL01341___yis 741 AATG-----TCATCGATTGCCGAACAAGTCGGAATCGATGATCCGACCTA 785
BSNT_01844___ 786 CTTTTCAAAACTCTTTAAGCAGATAGAAGGCATTTCACCAATTGAATACC 835
.||.|||||.||.|||||.||.||||||||.|||||.||..||||||||.
BL01341___yis 786 TTTCTCAAAGCTGTTTAAACAAATAGAAGGGATTTCGCCCGTTGAATACA 835
BSNT_01844___ 836 GGAAAATTGTCAGCCGGAAAGTTCAATAA 864
|.||.||..|.|..||.||..||.|.|.|
BL01341___yis 836 GAAAGATGATGAAGCGAAATATTGAGTGA 864
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