Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03093 and BL01340

See Amino acid alignment / Visit BSNT_03093 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:46
# Commandline: needle
#    -asequence dna-align/BSNT_03093___yokL.1.5803.seq
#    -bsequence dna-align/BL01340.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03093___yokL-BL01340.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03093___yokL-BL01340.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03093___yokL
# 2: BL01340
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 726
# Identity:     278/726 (38.3%)
# Similarity:   278/726 (38.3%)
# Gaps:         360/726 (49.6%)
# Score: 404.5
# 
#
#=======================================

BSNT_03093___      1 ATGGCAGTTAGTTATTGGACAGGGGAGAATCTTATACTGCGAGCAATTCA     50
                                                                       
BL01340            0 --------------------------------------------------      0

BSNT_03093___     51 ACCTGAAGATATCGTTATATTTG--ATTCGTTA--GATGA-----TGAAA     91
                                         |||  ||.|.|.|  |.|||     |||||
BL01340            1 --------------------TTGGCATCCATCAATGGTGAAAAAGTGAAA     30

BSNT_03093___     92 TTCTGCGAA--AT----ATGGACTCGCTACATTTTCCT---CG--TTCAG    130
                     |  ||||.|  ||    |||||          |..|||   ||  ||   
BL01340           31 T--TGCGTACGATCACAATGGA----------TGACCTGCCCGGATT---     65

BSNT_03093___    131 CTAATAACATGAGAGAATG------GGTA-GAAGAAC----AATTAGAAA    169
                             ||| |||||||      ||.| .||.|||    || |.||||
BL01340           66 --------ATG-GAGAATGATTTACGGAACTAAAAACCCTGAA-TGGAAA    105

BSNT_03093___    170 AA----GATG------AATT----------------CCGTTTTATTGCAG    193
                     ||    ||||      |.||                ||||||.|.|  |.
BL01340          106 AAATGGGATGCCCCTTATTTTCCGCTTCAGCCCGAACCGTTTCAAT--AC    153

BSNT_03093___    194 TTGATAGTGATAATAATATAGT---AGGTATAATTGAAA-----CC----    231
                     ||.||.|     ||..|.|.||   .|.|.|||..||||     ||    
BL01340          154 TTTATCG-----ATTCTTTTGTGCCGGCTTTAAAAGAAAAACCGCCGCGC    198

BSNT_03093___    232 --TTTGACTGTGATA---------GGAAA----AATGGTACC--TTCGGT    264
                       ||||   |.||||         |||.|    ||.||.|||  |||  |
BL01340          199 TATTTG---GCGATAGAGATCGGCGGAGAGCTGAAAGGAACCGTTTC--T    243

BSNT_03093___    265 TATTATT--------------------TGGCT-GTATTCG----AGCCAT    289
                     ||.||||                    ||||| |.||.||    .|.|||
BL01340          244 TACTATTGGGAATCCCGGCCGACACGCTGGCTGGAATGCGGGATCGGCAT    293

BSNT_03093___    290 ATA--------------------GGGGAAAAGGATTT------GCCAAAG    313
                     .||                    |||||.|.||   |      |||..||
BL01340          294 CTATGATCCGCGGTTTTGGAACGGGGGATACGG---TACGGAAGCCGTAG    340

BSNT_03093___    314 AAATGATCTTGATGGTTCTTCGCTTTTTCTTTTTGGAACTTGCTTATCAA    363
                     ||       |.||||.||..|    ||.||.||||             ||
BL01340          341 AA-------TTATGGATCGGC----TTCCTGTTTG-------------AA    366

BSNT_03093___    364 AAAGT------------------AAATACAAC-TGTTTATTCTTTTAATA    394
                     ||.||                  ||..||.|| ||.|.|..|       |
BL01340          367 AACGTCGATGTGCCGAGAATCGGAATGACGACGTGGTCAGGC-------A    409

BSNT_03093___    395 ATCCATCCATACGATTACAT-----GAAAAATTAGG-TTTCATGAAAGAG    438
                     |  ||..|..|.|||.|..|     ||||||...|| |||     ||||.
BL01340          410 A--CAGGCGGATGATGAGGTGCGCCGAAAAAGCCGGATTT-----AAGAT    452

BSNT_03093___    439 GGA------------CAACTAAGAAAGATCATTTTCACTAAAGGTGCTTA    476
                     |||            ||   |||..|||| |||.|.||    ||.|..||
BL01340          453 GGAAGGCCGGATTCGCA---AAGTCAGAT-ATTATGAC----GGAGTCTA    494

BSNT_03093___    477 TTATGATGGTTTTTGCTTTGGAA---TGACAAGAGAAG--------AATT    515
                     |||.|||....|..|.|..||||   || |..|||.||        .|||
BL01340          495 TTACGATTCAATCAGATACGGAATCCTG-CGGGAGGAGTGGGAGCTGATT    543

BSNT_03093___    516 TG-------AACTGAATCATGGATAA    534
                     ||       |.||||           
BL01340          544 TGCCGCGGAAGCTGA-----------    558


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