Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03093 and BL01340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_03093___yokL.1.5803.seq
# -bsequence dna-align/BL01340.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03093___yokL-BL01340.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03093___yokL-BL01340.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03093___yokL
# 2: BL01340
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 726
# Identity: 278/726 (38.3%)
# Similarity: 278/726 (38.3%)
# Gaps: 360/726 (49.6%)
# Score: 404.5
#
#
#=======================================
BSNT_03093___ 1 ATGGCAGTTAGTTATTGGACAGGGGAGAATCTTATACTGCGAGCAATTCA 50
BL01340 0 -------------------------------------------------- 0
BSNT_03093___ 51 ACCTGAAGATATCGTTATATTTG--ATTCGTTA--GATGA-----TGAAA 91
||| ||.|.|.| |.||| |||||
BL01340 1 --------------------TTGGCATCCATCAATGGTGAAAAAGTGAAA 30
BSNT_03093___ 92 TTCTGCGAA--AT----ATGGACTCGCTACATTTTCCT---CG--TTCAG 130
| ||||.| || ||||| |..||| || ||
BL01340 31 T--TGCGTACGATCACAATGGA----------TGACCTGCCCGGATT--- 65
BSNT_03093___ 131 CTAATAACATGAGAGAATG------GGTA-GAAGAAC----AATTAGAAA 169
||| ||||||| ||.| .||.||| || |.||||
BL01340 66 --------ATG-GAGAATGATTTACGGAACTAAAAACCCTGAA-TGGAAA 105
BSNT_03093___ 170 AA----GATG------AATT----------------CCGTTTTATTGCAG 193
|| |||| |.|| ||||||.|.| |.
BL01340 106 AAATGGGATGCCCCTTATTTTCCGCTTCAGCCCGAACCGTTTCAAT--AC 153
BSNT_03093___ 194 TTGATAGTGATAATAATATAGT---AGGTATAATTGAAA-----CC---- 231
||.||.| ||..|.|.|| .|.|.|||..|||| ||
BL01340 154 TTTATCG-----ATTCTTTTGTGCCGGCTTTAAAAGAAAAACCGCCGCGC 198
BSNT_03093___ 232 --TTTGACTGTGATA---------GGAAA----AATGGTACC--TTCGGT 264
|||| |.|||| |||.| ||.||.||| ||| |
BL01340 199 TATTTG---GCGATAGAGATCGGCGGAGAGCTGAAAGGAACCGTTTC--T 243
BSNT_03093___ 265 TATTATT--------------------TGGCT-GTATTCG----AGCCAT 289
||.|||| ||||| |.||.|| .|.|||
BL01340 244 TACTATTGGGAATCCCGGCCGACACGCTGGCTGGAATGCGGGATCGGCAT 293
BSNT_03093___ 290 ATA--------------------GGGGAAAAGGATTT------GCCAAAG 313
.|| |||||.|.|| | |||..||
BL01340 294 CTATGATCCGCGGTTTTGGAACGGGGGATACGG---TACGGAAGCCGTAG 340
BSNT_03093___ 314 AAATGATCTTGATGGTTCTTCGCTTTTTCTTTTTGGAACTTGCTTATCAA 363
|| |.||||.||..| ||.||.|||| ||
BL01340 341 AA-------TTATGGATCGGC----TTCCTGTTTG-------------AA 366
BSNT_03093___ 364 AAAGT------------------AAATACAAC-TGTTTATTCTTTTAATA 394
||.|| ||..||.|| ||.|.|..| |
BL01340 367 AACGTCGATGTGCCGAGAATCGGAATGACGACGTGGTCAGGC-------A 409
BSNT_03093___ 395 ATCCATCCATACGATTACAT-----GAAAAATTAGG-TTTCATGAAAGAG 438
| ||..|..|.|||.|..| ||||||...|| ||| ||||.
BL01340 410 A--CAGGCGGATGATGAGGTGCGCCGAAAAAGCCGGATTT-----AAGAT 452
BSNT_03093___ 439 GGA------------CAACTAAGAAAGATCATTTTCACTAAAGGTGCTTA 476
||| || |||..|||| |||.|.|| ||.|..||
BL01340 453 GGAAGGCCGGATTCGCA---AAGTCAGAT-ATTATGAC----GGAGTCTA 494
BSNT_03093___ 477 TTATGATGGTTTTTGCTTTGGAA---TGACAAGAGAAG--------AATT 515
|||.|||....|..|.|..|||| || |..|||.|| .|||
BL01340 495 TTACGATTCAATCAGATACGGAATCCTG-CGGGAGGAGTGGGAGCTGATT 543
BSNT_03093___ 516 TG-------AACTGAATCATGGATAA 534
|| |.||||
BL01340 544 TGCCGCGGAAGCTGA----------- 558
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