Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01845 and BL01339
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01845___degA.1.5803.seq
# -bsequence dna-align/BL01339___degA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01845___degA-BL01339___degA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01845___degA-BL01339___degA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01845___degA
# 2: BL01339___degA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1088
# Identity: 724/1088 (66.5%)
# Similarity: 724/1088 (66.5%)
# Gaps: 118/1088 (10.8%)
# Score: 2254.0
#
#
#=======================================
BSNT_01845___ 1 ATGAAAACAACAATTTACGATGTGGCAAAGGCGGCGGGTGTCTCGATCAC 50
|||||||.|||.|||||.|||||.||..|.|||||.||.||.|||||..|
BL01339___deg 1 ATGAAAAAAACCATTTATGATGTAGCGGAAGCGGCCGGCGTTTCGATTTC 50
BSNT_01845___ 51 AACTGTGTCCCGTGTGATAAACAATACGGGGAGAATCAGCGATAAA---- 96
.||.||.|||||.|||||.||||||||.|||||.|||||| |
BL01339___deg 51 CACGGTTTCCCGGGTGATCAACAATACCGGGAGGATCAGC-----AGGTC 95
BSNT_01845___ 97 -ACACGGCAGAAG-GT-CATGAATGTCATGAATGAAATGGCATACACGCC 143
|||.|||| ||| || |||| ..||||||||.||..|.|..|||..|||
BL01339___deg 96 GACAAGGCA-AAGAGTGCATG-CCGTCATGAAAGAGCTCGATTACCAGCC 143
BSNT_01845___ 144 CAATGTTCACGCCGCGGCTTTAACGGGAAAACGAACGAATATGATTGCTC 193
.|||||||||||..|.||..|.||.|||||.||.|||||.||.||.|..|
BL01339___deg 144 GAATGTTCACGCTTCTGCGCTTACCGGAAAGCGCACGAACATTATCGGCC 193
BSNT_01845___ 194 TCGTGGCGCCTGATATTTCAAATCCGTTTTACGGCGAACTGGCCAAAAGC 243
|..||.||||.||||||.||||.|||||||.||||||.||.||||||||.
BL01339___deg 194 TGTTGACGCCCGATATTGCAAACCCGTTTTTCGGCGAGCTTGCCAAAAGT 243
BSNT_01845___ 244 ATTGAGGAAAGAGCGGATGAGCTCGGTTTTCA-AATGTTGATTTGCAGCA 292
.||||.||..|.||||..|||||||| .|||| .||..||||.|||||.|
BL01339___deg 244 GTTGAAGAGCGGGCGGGCGAGCTCGG-CTTCAGCATTATGATGTGCAGTA 292
BSNT_01845___ 293 CCGATTACGATCCGAAAAAAGAAACAAAGTATTTTTCTGTGCTGAAACAG 342
||||...||||||||||||.||.||||.||||||.||.||.||.||.||
BL01339___deg 293 CCGACCGCGATCCGAAAAAGGAGACAACGTATTTCTCGGTCCTCAAGCA- 341
BSNT_01845___ 343 AAAAAG-GTGGATGGCATTATTTTTGCAACAGGGATTGAAAGCCATGACA 391
|||||| ||.||.|||||.||||||||.|||||.||.||||..||.||.|
BL01339___deg 342 AAAAAGCGTCGACGGCATCATTTTTGCGACAGGCATCGAAAATCAGGAGA 391
BSNT_01845___ 392 GTATGTCTGCTTTGGAGGAAATCGCCAGTGAACACATTCCGATTGCCATG 441
..|||..|||..|.|||||.||.||||..||...|||.|||.|.|..|||
BL01339___deg 392 CGATGGATGCGCTCGAGGATATTGCCAAAGAGGGCATACCGCTCGTGATG 441
BSNT_01845___ 442 ATTTCTCAGGATAAGC-CGCTTCTTCCGATGGATATTGTTGTGATAGATG 490
|||||.|||||| .|| |.|||.|||||||||||.|.||.||.||.||||
BL01339___deg 442 ATTTCCCAGGAT-CGCGCCCTTGTTCCGATGGATGTCGTGGTCATCGATG 490
BSNT_01845___ 491 ACGTTCGTGGCGGATATGTGGCTGCCAAGCATCTTCTGTCACTCGGCCAC 540
|..||...|||||||||.|.||..|...||||.|..|.||.|||||.||.
BL01339___deg 491 ATTTTATGGGCGGATATTTAGCGACGCGGCATTTAATTTCGCTCGGTCAT 540
BSNT_01845___ 541 ACGAACATCGCCTGCATTATCGGAGACGGGTCAACGACAGGCGAAAAAAA 590
|.||..|||||||||||...|||.|||||.||.||.||.||.||||||.|
BL01339___deg 541 AAGACAATCGCCTGCATCGCCGGCGACGGATCGACAACCGGAGAAAAAGA 590
BSNT_01845___ 591 TAGAATCAAAGGCTTCCGTCAGGCGATGGAGGAAGCGGGCGT----GCCC 636
.||..|.|||||||||....|.||||||||.|||||.|||.| ||
BL01339___deg 591 CAGGCTGAAAGGCTTCAAAAAAGCGATGGATGAAGCAGGCATCAAAGC-- 638
BSNT_01845___ 637 ATTGATGAATCACTTATC-----ATCCAAACGCGG-TTTTACTTGGAAAG 680
.||||||.|.||.||| ||| ||| ||||.|.|||||.|
BL01339___deg 639 --GGATGAAACGCTCATCGCCGGATC------CGGTTTTTCCCTGGAATG 680
BSNT_01845___ 681 CGGCAAGGAAGAAGCGG-----GAAAATTGCTCGACAGGAACGCTCCGAC 725
||||| ||.|||||| .|.|.|| ||.|.||.||...||||||
BL01339___deg 681 CGGCA---AAAAAGCGGCCGCTCAGATTT--TCAAAAGCAATATTCCGAC 725
BSNT_01845___ 726 TGCTATTTTTGCCTTCAACGACGTATTGGCTTGTGCCGCCATACAAGTTG 775
.||..||||||||.|.||.||.||..|.||.||.|..|.|||.||...||
BL01339___deg 726 CGCCGTTTTTGCCATGAATGATGTGCTCGCGTGCGGAGTCATTCAGACTG 775
BSNT_01845___ 776 C--GAGAATAAGAGG----CATAAAAGTGC---CGGATGATCTT-TCTAT 815
| |.|||| |.|| ||| ||.| ||||| || ||..|
BL01339___deg 776 CAAGGGAAT--GGGGGCTCCAT----GTTCCAACGGAT----TTATCGGT 815
BSNT_01845___ 816 CATTGGTTTTGATAATACGATACTCGCAGAAATGGCGGCTCCGCCCCTGA 865
|||.||.||||||||||||.|..|.||.||||||.|.|.||||||.||.|
BL01339___deg 816 CATCGGCTTTGATAATACGTTTTTAGCCGAAATGACCGATCCGCCGCTTA 865
BSNT_01845___ 866 CAACCGTAGCCCAGCCGATAAAAGAGATGGG--GCGGAGCGTCATCGAAC 913
|.||.||..|.||||||||..||||.||||| ||.|.|||.| |||.|
BL01339___deg 866 CGACAGTGTCTCAGCCGATTGAAGAAATGGGCCGCCGCGCGGC--CGAGC 913
BSNT_01845___ 914 TGCTGGCAGAAGCAAT-AGAGG---GAAAA---CGAAAGGCGAAACAAAA 956
||||.||.||||.||| ||.|| ||||| |||||.|| ||
BL01339___deg 914 TGCTTGCCGAAGAAATCAGCGGCAAGAAAAGCTCGAAAAGC-------AA 956
BSNT_01845___ 957 AATAGTGCTTCCGCCTGAGCTTGTAGTCAGACATTCTACATCACCGC--- 1003
|||..|.||..|||||||.|||||.||||||||.||.||..|.||.|
BL01339___deg 957 AATCATTCTCACGCCTGAACTTGTCGTCAGACAGTCGACGGCCCCTCCAT 1006
BSNT_01845___ 1004 -TCAA-------CACATGA------------------- 1014
|.|| ||||||.
BL01339___deg 1007 TTAAAAAAGAAGCACATGCCGAAAAGAGCGGGTTTTGA 1044
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