Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01853 and BL01337
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01853___yisV.1.5803.seq
# -bsequence dna-align/BL01337___yisV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01853___yisV-BL01337___yisV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01853___yisV-BL01337___yisV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01853___yisV
# 2: BL01337___yisV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1515
# Identity: 442/1515 (29.2%)
# Similarity: 442/1515 (29.2%)
# Gaps: 945/1515 (62.4%)
# Score: 1234.0
#
#
#=======================================
BSNT_01853___ 1 TTGTCGCAATGGCAGCCAAGCCGAAAGTCGGATATTCCGCTGCATCGGCA 50
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 51 GATCGAACAATATATGAAAGACAAGATTCTTCACGGAGAGTGGGCTGTAG 100
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 101 GGACGAAAATCCCCTCACAGAGAACGCTGGCCGACATGTTTCAAGTCAAC 150
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 151 CGCAGCACAGTCACAGCAGCTATAGATGAACTCACGTCTCAAGGCTTGTT 200
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 201 AGAGGGAAGAAGAGGCGGCGGTACGAAGGTTGTAAACAGTACTTGGAGCG 250
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 251 TGCTGGCGGCTGAGCCACCGCTTGATTGGAGCGATTACGTCCGTTCGGGC 300
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 301 ATTCATCGCGCCAATTCTTCCATCATTCAAGCTATTAATCAGAACGAACC 350
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 351 AAGAGCGGATATCATCAGATTAGGAACTGGAGAACTATCACCGGATCTTG 400
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 401 TGCCTGCTGACACAATTGGACGGATGTTTCAGCAAATCAATCCGGGCGCC 450
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 451 CTGTCTTTAGGATATGAGCAGCCGAAAGGAAACCGTCAGCTGCGGGAGGC 500
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 501 AGTGGCCGACCATTTAAAAGGAAAGAAGATCCATGTGTCACCGTCTGCAA 550
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 551 TTTTAATTGTGTCCGGTGCACTTCAGGCACTTCAGCTCATCTCAATTGGA 600
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 601 CTTTTAAAACGAGATTCTGTCATTTTGACGGAGAAGCCGTCCTACCTTCA 650
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 651 ATCCTTGCATGTATTTCAATCAGCTGGGATGCGGCTTCGCGGCTTGCCGA 700
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 701 TGGATGATGAAGGGGTCAAAGCGGGGCTTGTTTCTTCTAATCGAAAACAA 750
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 751 TATGGAGGACAGCTGCTTTACACGATTCCGTCGTTTCATAATCCGACAGG 800
BL01337___yis 0 -------------------------------------------------- 0
BSNT_01853___ 801 CACAGTCATGTCAGAGCAGCGAA----GGAA---AGAGATCATCAGCCTG 843
||||| |||| |||| .|||.|.||
BL01337___yis 1 -------ATGTC-------CGAAGACCGGAAGCGCGAGCTGAT------- 29
BSNT_01853___ 844 TCAAAAAAAG--AGCAGCTG------CCCATCATTGAGGATGATGCGTAC 885
|| |||..|| |||||||| ||..|.|||||.|||||.||.||.
BL01337___yis 30 TC-AAATCAGCAAGCAGCTGTCGCTCCCGGTTATTGAAGATGACGCATAT 78
BSNT_01853___ 886 GGTGATTTATGGTTTGAAGAAAAACCTCCG----CAGCCGTTGAAAGCAA 931
||.|||||...|.||||.| ..||.||| | ||||.||||.||.|
BL01337___yis 79 GGCGATTTGCAGCTTGACG---GCCCGCCGTCGTC-GCCGCTGAAGGCCA 124
BSNT_01853___ 932 TGGATCATGAG--GGCAATATTCTGTATCTGGGCACGTTTTCAAAAACGG 979
|||| || ||| ||||..|||||.|||.|.|||||.||.||.|||||.|
BL01337___yis 125 TGGA-CA-GAGAAGGCAGCATTCTTTATGTCGGCACATTATCGAAAACCG 172
BSNT_01853___ 980 TTAGCCCCGGCCTGCGAATCGGCTGGCTTGCCGGTCCGGAGCCGGTTATT 1029
|.||.||||||||.||.|||||||||.|.||.|||||||||||.||.||.
BL01337___yis 173 TCAGTCCCGGCCTCCGCATCGGCTGGGTCGCAGGTCCGGAGCCCGTCATC 222
BSNT_01853___ 1030 GAAAGGTTGGCGGACATTAAAATGCAGACAGACTACGGATCAAGCGGCCT 1079
||.|||.||||.||.||||||||||||||.||||||||||||||.....|
BL01337___yis 223 GAGAGGCTGGCCGATATTAAAATGCAGACTGACTACGGATCAAGTTCATT 272
BSNT_01853___ 1080 GTCCCAGTGGGCGGCTGCCGAGTGGCTGTCACAG-GGGTATTATGAAGAG 1128
|||.||.|||||||||||..|||||||.||| || |||...|||||.||.
BL01337___yis 273 GTCGCAATGGGCGGCTGCAAAGTGGCTTTCA-AGCGGGCTCTATGATGAA 321
BSNT_01853___ 1129 CATCTGACTTGGGTACGCAGGAAGCTTAAAG------------AAAGGAG 1166
.||||.| ||.||| |||||| |||||.|
BL01337___yis 322 AATCTCA---------GCCGGA---TTAAAGTCGAACTGAGACAAAGGCG 359
BSNT_01853___ 1167 AGACGCCGCCGTTCATTTTCTCGAGCGGTA-TGCCGGGGACATTGCCACG 1215
.||.|..||..|.|..|.|||.|||...|| |||.|.||| ||.||| ||
BL01337___yis 360 GGATGAAGCGCTCCGGTGTCTTGAGACCTATTGCAGAGGA-ATCGCC-CG 407
BSNT_01853___ 1216 -TGGCGGATTCCCGCAGGCGGCTTTTATATTTGGGTGACATTTCACAAAA 1264
|||...|..|||.|||||||.|||||.||||||||.||||| .|.|||
BL01337___yis 408 CTGGGAAAAGCCCTCAGGCGGATTTTACATTTGGGTCACATT--CCTAAA 455
BSNT_01853___ 1265 ACCTGC---CTGTTAGCCGTTTCTT---TTATGGATTGCTGAAACGGCAG 1308
||| || |..|.|||..|||.|| ..|.|.|||.|.|||| .|.
BL01337___yis 456 ACC-GCTCTCGCTCAGCGCTTTGTTCGAACAAGCATTACAGAAA---AAC 501
BSNT_01853___ 1309 GTGCTTGTGAATCCCGG----CTATATTTATGACGGT---GAAGACCGAA 1351
.|.||..|.|||||||| ||.| |||.| |||| ||.||
BL01337___yis 502 ATCCTCATCAATCCCGGCACCCTCT-------ACGATAAGGAAG-CCAAA 543
BSNT_01853___ 1352 -ACAGCATCAGGCTGTCATATTCCTATGCATCTCTTG---GAGATTTGGA 1397
||||||||||..||||.|||||.||.||.||| ||| |||.||.|
BL01337___yis 544 TACAGCATCAGATTGTCCTATTCGTACGCCTCT-TTGACAGAGCTTCG-- 590
BSNT_01853___ 1398 AACT--GGCATT-AAAGCGGCA---GCTGAAACAGCACGCCG-------C 1434
|| |||||| ||| || ||.||| |.||||| |
BL01337___yis 591 --CTACGGCATTCAAA----CAATCGCAGAA----CTCGCCGGTAAGCTC 630
BSNT_01853___ 1435 CTGATGATGTCCTAG 1449
.|| |||
BL01337___yis 631 ATG-TGA-------- 636
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