Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01853 and BL01337

See Amino acid alignment / Visit BSNT_01853 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_01853___yisV.1.5803.seq
#    -bsequence dna-align/BL01337___yisV.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01853___yisV-BL01337___yisV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01853___yisV-BL01337___yisV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01853___yisV
# 2: BL01337___yisV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1515
# Identity:     442/1515 (29.2%)
# Similarity:   442/1515 (29.2%)
# Gaps:         945/1515 (62.4%)
# Score: 1234.0
# 
#
#=======================================

BSNT_01853___      1 TTGTCGCAATGGCAGCCAAGCCGAAAGTCGGATATTCCGCTGCATCGGCA     50
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___     51 GATCGAACAATATATGAAAGACAAGATTCTTCACGGAGAGTGGGCTGTAG    100
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    101 GGACGAAAATCCCCTCACAGAGAACGCTGGCCGACATGTTTCAAGTCAAC    150
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    151 CGCAGCACAGTCACAGCAGCTATAGATGAACTCACGTCTCAAGGCTTGTT    200
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    201 AGAGGGAAGAAGAGGCGGCGGTACGAAGGTTGTAAACAGTACTTGGAGCG    250
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    251 TGCTGGCGGCTGAGCCACCGCTTGATTGGAGCGATTACGTCCGTTCGGGC    300
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    301 ATTCATCGCGCCAATTCTTCCATCATTCAAGCTATTAATCAGAACGAACC    350
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    351 AAGAGCGGATATCATCAGATTAGGAACTGGAGAACTATCACCGGATCTTG    400
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    401 TGCCTGCTGACACAATTGGACGGATGTTTCAGCAAATCAATCCGGGCGCC    450
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    451 CTGTCTTTAGGATATGAGCAGCCGAAAGGAAACCGTCAGCTGCGGGAGGC    500
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    501 AGTGGCCGACCATTTAAAAGGAAAGAAGATCCATGTGTCACCGTCTGCAA    550
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    551 TTTTAATTGTGTCCGGTGCACTTCAGGCACTTCAGCTCATCTCAATTGGA    600
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    601 CTTTTAAAACGAGATTCTGTCATTTTGACGGAGAAGCCGTCCTACCTTCA    650
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    651 ATCCTTGCATGTATTTCAATCAGCTGGGATGCGGCTTCGCGGCTTGCCGA    700
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    701 TGGATGATGAAGGGGTCAAAGCGGGGCTTGTTTCTTCTAATCGAAAACAA    750
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    751 TATGGAGGACAGCTGCTTTACACGATTCCGTCGTTTCATAATCCGACAGG    800
                                                                       
BL01337___yis      0 --------------------------------------------------      0

BSNT_01853___    801 CACAGTCATGTCAGAGCAGCGAA----GGAA---AGAGATCATCAGCCTG    843
                            |||||       ||||    ||||   .|||.|.||       
BL01337___yis      1 -------ATGTC-------CGAAGACCGGAAGCGCGAGCTGAT-------     29

BSNT_01853___    844 TCAAAAAAAG--AGCAGCTG------CCCATCATTGAGGATGATGCGTAC    885
                     || |||..||  ||||||||      ||..|.|||||.|||||.||.||.
BL01337___yis     30 TC-AAATCAGCAAGCAGCTGTCGCTCCCGGTTATTGAAGATGACGCATAT     78

BSNT_01853___    886 GGTGATTTATGGTTTGAAGAAAAACCTCCG----CAGCCGTTGAAAGCAA    931
                     ||.|||||...|.||||.|   ..||.|||    | ||||.||||.||.|
BL01337___yis     79 GGCGATTTGCAGCTTGACG---GCCCGCCGTCGTC-GCCGCTGAAGGCCA    124

BSNT_01853___    932 TGGATCATGAG--GGCAATATTCTGTATCTGGGCACGTTTTCAAAAACGG    979
                     |||| || |||  ||||..|||||.|||.|.|||||.||.||.|||||.|
BL01337___yis    125 TGGA-CA-GAGAAGGCAGCATTCTTTATGTCGGCACATTATCGAAAACCG    172

BSNT_01853___    980 TTAGCCCCGGCCTGCGAATCGGCTGGCTTGCCGGTCCGGAGCCGGTTATT   1029
                     |.||.||||||||.||.|||||||||.|.||.|||||||||||.||.||.
BL01337___yis    173 TCAGTCCCGGCCTCCGCATCGGCTGGGTCGCAGGTCCGGAGCCCGTCATC    222

BSNT_01853___   1030 GAAAGGTTGGCGGACATTAAAATGCAGACAGACTACGGATCAAGCGGCCT   1079
                     ||.|||.||||.||.||||||||||||||.||||||||||||||.....|
BL01337___yis    223 GAGAGGCTGGCCGATATTAAAATGCAGACTGACTACGGATCAAGTTCATT    272

BSNT_01853___   1080 GTCCCAGTGGGCGGCTGCCGAGTGGCTGTCACAG-GGGTATTATGAAGAG   1128
                     |||.||.|||||||||||..|||||||.||| || |||...|||||.||.
BL01337___yis    273 GTCGCAATGGGCGGCTGCAAAGTGGCTTTCA-AGCGGGCTCTATGATGAA    321

BSNT_01853___   1129 CATCTGACTTGGGTACGCAGGAAGCTTAAAG------------AAAGGAG   1166
                     .||||.|         ||.|||   ||||||            |||||.|
BL01337___yis    322 AATCTCA---------GCCGGA---TTAAAGTCGAACTGAGACAAAGGCG    359

BSNT_01853___   1167 AGACGCCGCCGTTCATTTTCTCGAGCGGTA-TGCCGGGGACATTGCCACG   1215
                     .||.|..||..|.|..|.|||.|||...|| |||.|.||| ||.||| ||
BL01337___yis    360 GGATGAAGCGCTCCGGTGTCTTGAGACCTATTGCAGAGGA-ATCGCC-CG    407

BSNT_01853___   1216 -TGGCGGATTCCCGCAGGCGGCTTTTATATTTGGGTGACATTTCACAAAA   1264
                      |||...|..|||.|||||||.|||||.||||||||.|||||  .|.|||
BL01337___yis    408 CTGGGAAAAGCCCTCAGGCGGATTTTACATTTGGGTCACATT--CCTAAA    455

BSNT_01853___   1265 ACCTGC---CTGTTAGCCGTTTCTT---TTATGGATTGCTGAAACGGCAG   1308
                     ||| ||   |..|.|||..|||.||   ..|.|.|||.|.||||   .|.
BL01337___yis    456 ACC-GCTCTCGCTCAGCGCTTTGTTCGAACAAGCATTACAGAAA---AAC    501

BSNT_01853___   1309 GTGCTTGTGAATCCCGG----CTATATTTATGACGGT---GAAGACCGAA   1351
                     .|.||..|.||||||||    ||.|       |||.|   |||| ||.||
BL01337___yis    502 ATCCTCATCAATCCCGGCACCCTCT-------ACGATAAGGAAG-CCAAA    543

BSNT_01853___   1352 -ACAGCATCAGGCTGTCATATTCCTATGCATCTCTTG---GAGATTTGGA   1397
                      ||||||||||..||||.|||||.||.||.||| |||   |||.||.|  
BL01337___yis    544 TACAGCATCAGATTGTCCTATTCGTACGCCTCT-TTGACAGAGCTTCG--    590

BSNT_01853___   1398 AACT--GGCATT-AAAGCGGCA---GCTGAAACAGCACGCCG-------C   1434
                       ||  |||||| |||    ||   ||.|||    |.|||||       |
BL01337___yis    591 --CTACGGCATTCAAA----CAATCGCAGAA----CTCGCCGGTAAGCTC    630

BSNT_01853___   1435 CTGATGATGTCCTAG   1449
                     .|| |||        
BL01337___yis    631 ATG-TGA--------    636


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