Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01807 and BL01320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_01807___yhjR.1.5803.seq
# -bsequence dna-align/BL01320___yhrR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01807___yhjR-BL01320___yhrR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01807___yhjR-BL01320___yhrR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01807___yhjR
# 2: BL01320___yhrR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 513
# Identity: 279/513 (54.4%)
# Similarity: 279/513 (54.4%)
# Gaps: 147/513 (28.7%)
# Score: 665.0
#
#
#=======================================
BSNT_01807___ 1 ---TTGCAT-TACAGC--TACTATC---CCTATCCGGTGCCA-------- 33
|.|.|| |.|||| ||..||| ||||||| .||||
BL01320___yhr 1 ATGTGGTATGTTCAGCCGTATCATCCCGCCTATCC--CGCCAGGCAAAAC 48
BSNT_01807___ 34 TACAGG------GAAGATCCTGTTTTGATTCGAAATTTGCAGAAGGCCAT 77
.||||| .|||||| |.||| ||.||..|
BL01320___yhr 49 AACAGGCTGATCAAAGATC----------TAGAA--------AAAGCGGT 80
BSNT_01807___ 78 CAACGGAGAATTCAGTGCCAT--TCAATGCTACCGCAAGCTCGCCGAACT 125
.||||||||...||||||..| || |||||||..||..||||..||..
BL01320___yhr 81 AAACGGAGAGCACAGTGCGGTCGTC--TGCTACCAAAAAATCGCACAAAA 128
BSNT_01807___ 126 CGCCCACAG-CGATGAGGTCAGAAAACAG---ATTGAAGAAATCAGGCGT 171
.|||| |.| .|.||||| .||||||| |||..|||||||||.|..
BL01320___yhr 129 GGCCC-CGGATGCTGAGG---CAAAACAGCAAATTTTAGAAATCAGACAG 174
BSNT_01807___ 172 GACGAGATTCGCCACCTCCGTGAAT--TTTCC--ACACTGTATGGTTCAA 217
|||||.||.||||| |.|.||| .|||| .||.|.|||...||..
BL01320___yhr 175 GACGAAATCCGCCA----CTTTAATGCGTTCCTGGCATTTTATACGTCTC 220
BSNT_01807___ 218 TTACCGGC--AAA----CACAT---CATGCCGAAACAAACGGAAGAATGC 258
||.||||| ||| .|||| ||| .|||||....||.
BL01320___yhr 221 TTGCCGGCCGAAAGCCTGACATTTCCAT---------TACGGAGCCTTGT 261
BSNT_01807___ 259 CCGGACAATTTCACAAGAGGATTGGA---CG-------CCGCTTTTAAAG 298
|||| ||.||.|||||| || ||||.||.||||
BL01320___yhr 262 CCGG----------AACAGTATTGGAACGCGCTGGAGTCCGCATTAAAAG 301
BSNT_01807___ 299 ATGAACAAGAAACCGTCGACTTTTACTTGCGTGCGGCCGAGGA-AACGTC 347
|.||.||.|||||.||.||.|||||.|| ||| |.|| |
BL01320___yhr 302 ACGAGCAGGAAACGGTTGATTTTTATTT------------GGACATCG-C 338
BSNT_01807___ 348 AAACT---TAAAAG-----------CGAAAGGCGTCTTTACGCGCGCAGC 383
|.||| |.|||| ||..|.||| ||.|.|||.||.||
BL01320___yhr 339 AGACTATGTCAAAGACCGGGCGATACGGGATGCG--TTCAAGCGGGCGGC 386
BSNT_01807___ 384 ACGTGATGAACAAAATCACGCTGTCTGGTTCCTATACTATCT-------G 426
|..|||.||||||||.||.||.||||||||..|||||| ||| |
BL01320___yhr 387 AGCTGACGAACAAAACCATGCAGTCTGGTTTTTATACT-TCTTGTCAAAG 435
BSNT_01807___ 427 ATG-GAACGTTAG 438
|.| ||
BL01320___yhr 436 AGGTGA------- 441
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